Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.63919 * 2 1 4 4 C 1.54319 * 110.72390 * 236.86008 * 2 1 3 5 5 N 1.47022 * 107.27408 * 219.43964 * 4 2 1 6 6 C 1.34769 * 125.65039 * 178.97053 * 5 4 2 7 7 O 1.21549 * 120.00136 * 354.20170 * 6 5 4 8 8 C 1.47883 * 120.00204 * 174.20111 * 6 5 4 9 9 C 1.39456 * 121.10651 * 334.22877 * 8 6 5 10 10 C 1.38621 * 119.36679 * 179.72882 * 9 8 6 11 11 N 1.31588 * 121.63884 * 0.56333 * 10 9 8 12 12 C 1.32205 * 121.86617 * 359.70892 * 11 10 9 13 13 C 1.40860 * 121.11739 * 154.50798 * 8 6 5 14 14 N 1.34395 * 135.14759 * 0.02562 * 13 8 6 15 15 N 1.28690 * 109.15433 * 180.02562 * 14 13 8 16 16 N 1.28783 * 111.75403 * 359.97438 * 15 14 13 17 17 C 1.46505 * 125.86556 * 179.97438 * 16 15 14 18 18 C 1.47422 * 108.69945 * 358.94393 * 5 4 2 19 19 C 1.55120 * 104.94714 * 23.99646 * 18 5 4 20 20 H 1.09007 * 110.93187 * 81.21859 * 19 18 5 21 21 N 1.46501 * 111.16557 * 205.13351 * 19 18 5 22 22 C 1.36939 * 120.00082 * 267.17351 * 21 19 18 23 23 H 1.08006 * 119.99762 * 359.97438 * 22 21 19 24 24 C 1.38806 * 120.00069 * 180.02562 * 22 21 19 25 25 N 1.31628 * 120.00038 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00281 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46909 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47034 * 119.99909 * 26 24 22 29 29 H 1.48507 * 109.47150 * 240.00197 * 26 24 22 30 30 H 1.09006 * 109.46820 * 179.29410 * 1 2 3 31 31 H 1.09002 * 109.47588 * 59.30433 * 1 2 3 32 32 H 1.08998 * 109.47805 * 299.30061 * 1 2 3 33 33 H 1.09001 * 109.88361 * 338.85605 * 4 2 1 34 34 H 1.08995 * 109.88531 * 99.86748 * 4 2 1 35 35 H 1.07994 * 120.32016 * 359.97191 * 9 8 6 36 36 H 1.08002 * 119.18183 * 180.28109 * 10 9 8 37 37 H 1.09001 * 109.47052 * 90.02960 * 17 16 15 38 38 H 1.09007 * 109.47018 * 210.02923 * 17 16 15 39 39 H 1.09001 * 109.47334 * 330.02509 * 17 16 15 40 40 H 1.08999 * 110.36838 * 142.96754 * 18 5 4 41 41 H 1.09005 * 110.36293 * 265.17481 * 18 5 4 42 42 H 0.97001 * 119.99863 * 87.17133 * 21 19 18 43 43 H 0.96994 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2446 -1.5493 -0.7416 6 6 3.9924 -2.3809 -1.4937 7 8 3.6586 -2.6340 -2.6348 8 6 5.2190 -2.9854 -0.9308 9 6 5.9202 -2.3635 0.1018 10 6 7.0627 -2.9649 0.6063 11 7 7.5109 -4.1058 0.1277 12 6 6.8942 -4.7414 -0.8539 13 6 5.7214 -4.2056 -1.4236 14 7 5.3472 -5.0737 -2.3788 15 7 6.1844 -6.0505 -2.4131 16 7 7.1180 -5.9099 -1.5373 17 6 8.2281 -6.8384 -1.3094 18 6 3.4633 -1.2508 0.6854 19 6 2.0790 -0.7933 1.2151 20 1 1.4452 -1.6511 1.4403 21 7 2.2214 0.0738 2.3874 22 6 2.1867 -0.4651 3.6458 23 1 2.0540 -1.5292 3.7741 24 6 2.3211 0.3565 4.7565 25 7 2.4824 1.6535 4.6001 26 14 2.2731 -0.3783 6.4732 27 1 2.0825 -1.8480 6.3774 28 1 3.5514 -0.0890 7.1714 29 1 1.1467 0.2178 7.2356 30 1 -0.3633 -1.0277 -0.0127 31 1 -0.3634 0.5246 -0.8837 32 1 -0.3634 0.5029 0.8961 33 1 1.3131 -1.4732 -1.5800 34 1 2.3715 -0.0991 -1.9989 35 1 5.5743 -1.4242 0.5073 36 1 7.6009 -2.4830 1.4091 37 1 9.0717 -6.5579 -1.9401 38 1 8.5276 -6.7966 -0.2621 39 1 7.9109 -7.8516 -1.5563 40 1 3.7961 -2.1445 1.2133 41 1 4.1946 -0.4504 0.7977 42 1 2.3403 1.0295 2.2721 43 1 2.5760 2.2276 5.3763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055014243.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = 104.414778 kcal Electronic energy + Delta-G solvation = -28087.834192 eV Core-core repulsion = 24170.542592 eV Total energy + Delta-G solvation = -3917.291599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.53189 -41.49270 -39.92977 -38.92882 -36.15663 -35.88047 -34.41898 -33.15184 -32.37688 -31.94785 -29.22451 -28.95962 -27.91522 -26.45747 -25.71121 -24.81899 -23.70853 -22.66744 -21.31787 -20.61770 -20.09896 -19.10606 -18.67649 -18.28419 -18.13252 -17.40025 -17.02141 -16.33195 -16.26383 -15.83002 -15.40429 -15.29427 -14.76193 -14.73862 -14.45614 -14.27884 -14.15902 -14.10058 -13.99516 -13.68538 -13.47040 -13.25343 -12.99740 -12.86710 -12.84149 -12.65649 -12.25367 -12.12201 -12.07701 -11.96485 -11.67688 -11.50691 -11.37628 -10.93688 -10.65838 -10.35431 -10.14358 -9.74494 -8.98309 -7.89451 -5.18396 -1.10015 -0.23610 0.85531 0.94082 1.53078 1.55722 1.57965 1.63676 1.73551 2.43801 2.50705 2.60855 3.04960 3.09699 3.28050 3.41565 3.59734 3.63073 3.80797 3.91420 4.02388 4.12186 4.19751 4.24539 4.31903 4.37974 4.50028 4.55033 4.57161 4.58654 4.68637 4.73605 4.86258 4.90772 5.04613 5.10643 5.12982 5.19302 5.32979 5.36989 5.48567 5.61528 6.29964 6.32736 6.35902 6.90496 6.99735 7.40727 8.10337 8.36010 9.32963 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.003499 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.198066 B = 7999.485271 C = 9679.692473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 H 0.088 0.912 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.565 3.435 7 O -0.557 6.557 8 C -0.036 4.036 9 C -0.123 4.123 10 C 0.173 3.827 11 N -0.454 5.454 12 C 0.198 3.802 13 C -0.024 4.024 14 N -0.271 5.271 15 N -0.018 5.018 16 N -0.297 5.297 17 C 0.078 3.922 18 C 0.074 3.926 19 C 0.171 3.829 20 H 0.061 0.939 21 N -0.714 5.714 22 C -0.238 4.238 23 H 0.076 0.924 24 C -0.062 4.062 25 N -0.962 5.962 26 Si 0.961 3.039 27 H -0.269 1.269 28 H -0.293 1.293 29 H -0.301 1.301 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.185 0.815 36 H 0.230 0.770 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.380 0.620 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.229 -10.321 -8.643 17.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.123 4.123 3 H 0.107 0.893 4 C -0.004 4.004 5 N -0.332 5.332 6 C 0.354 3.646 7 O -0.436 6.436 8 C -0.052 4.052 9 C -0.146 4.146 10 C 0.000 4.000 11 N -0.168 5.168 12 C -0.044 4.044 13 C -0.154 4.154 14 N -0.145 5.145 15 N 0.001 4.999 16 N -0.100 5.100 17 C -0.060 4.060 18 C -0.051 4.051 19 C 0.060 3.940 20 H 0.079 0.921 21 N -0.353 5.353 22 C -0.370 4.370 23 H 0.094 0.906 24 C -0.255 4.255 25 N -0.612 5.612 26 Si 0.792 3.208 27 H -0.194 1.194 28 H -0.220 1.220 29 H -0.228 1.228 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.202 0.798 36 H 0.246 0.754 37 H 0.130 0.870 38 H 0.136 0.864 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.213 0.787 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.305 -12.076 -10.004 19.332 hybrid contribution -0.383 0.991 1.293 1.673 sum 10.922 -11.086 -8.711 17.835 Atomic orbital electron populations 1.21626 0.92973 1.02031 1.02170 1.22443 0.97310 0.99495 0.93003 0.89345 1.22085 0.86916 0.94299 0.97101 1.48338 1.29713 1.43067 1.12126 1.17855 0.83138 0.78700 0.84929 1.90799 1.71844 1.61474 1.19472 1.19523 0.96177 0.92407 0.97051 1.23220 0.95692 1.02442 0.93227 1.23702 0.91945 0.87605 0.96782 1.66459 1.31758 1.09863 1.08718 1.19957 0.94946 0.91583 0.97924 1.20378 0.97898 0.98229 0.98921 1.75408 1.20234 1.00361 1.18467 1.78099 0.95167 1.18215 1.08425 1.47461 1.22312 1.16389 1.23790 1.22806 0.84573 0.92340 1.06287 1.23657 1.01810 1.01200 0.78404 1.21514 0.92676 0.93358 0.86414 0.92140 1.42333 1.86275 1.06246 1.00447 1.19575 1.40364 0.92821 0.84199 0.90588 1.25369 1.03440 0.95774 1.00907 1.69786 1.58130 1.03689 1.29571 0.85259 0.76509 0.77955 0.81096 1.19353 1.22008 1.22833 0.92594 0.90876 0.93076 0.91287 0.90519 0.79848 0.75390 0.87045 0.86376 0.85763 0.90343 0.89428 0.78721 0.94038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.14 71.98 0.66 -2.72 16 2 C -0.10 -2.86 3.19 -9.61 -0.03 -2.89 16 3 H 0.09 2.47 8.00 -2.38 -0.02 2.45 16 4 C 0.12 3.25 6.47 86.73 0.56 3.81 16 5 N -0.60 -17.89 3.33 -814.75 -2.71 -20.60 16 6 C 0.57 19.25 7.66 86.80 0.67 19.91 16 7 O -0.56 -23.02 16.95 -3.87 -0.07 -23.08 16 8 C -0.04 -1.06 5.68 -19.79 -0.11 -1.18 16 9 C -0.12 -2.64 8.19 22.65 0.19 -2.45 16 10 C 0.17 2.99 11.14 84.82 0.94 3.94 16 11 N -0.45 -9.82 10.35 -193.09 -2.00 -11.82 16 12 C 0.20 5.21 8.08 134.18 1.08 6.29 16 13 C -0.02 -0.78 6.97 40.06 0.28 -0.50 16 14 N -0.27 -9.74 12.19 -51.94 -0.63 -10.37 16 15 N -0.02 -0.52 13.07 37.02 0.48 -0.03 16 16 N -0.30 -6.80 3.79 -366.58 -1.39 -8.20 16 17 C 0.08 0.78 11.41 127.77 1.46 2.24 16 18 C 0.07 2.13 4.74 86.93 0.41 2.55 16 19 C 0.17 5.71 3.17 46.46 0.15 5.86 16 20 H 0.06 2.15 8.00 -2.38 -0.02 2.13 16 21 N -0.71 -30.26 5.25 -316.03 -1.66 -31.92 16 22 C -0.24 -11.51 9.96 84.03 0.84 -10.67 16 23 H 0.08 3.58 7.83 -2.91 -0.02 3.55 16 24 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 25 N -0.96 -53.17 13.06 21.65 0.28 -52.89 16 26 Si 0.96 42.20 29.55 68.60 2.03 44.23 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 29 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 30 H 0.05 1.41 8.12 -2.38 -0.02 1.39 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.93 7.80 -2.39 -0.02 1.91 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.18 3.41 4.86 -2.91 -0.01 3.39 16 36 H 0.23 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 2.21 6.91 -2.39 -0.02 2.19 16 41 H 0.09 2.36 6.86 -2.38 -0.02 2.34 16 42 H 0.38 17.39 7.76 -92.71 -0.72 16.67 16 43 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -73.02 361.53 2.24 -70.79 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.34 Total: 22.41 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: 7.56 Total: 21.48 kcal Atomic # 7 Polarization: -128.19 SS G_CDS: -7.63 Total: -135.82 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.07 Total: -23.08 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -73.02 2.24 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014243.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.200 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds