Wall clock time and date at job start Tue Mar 31 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.78174 * 2 1 4 4 C 1.54321 * 110.71610 * 123.23776 * 2 1 3 5 5 N 1.47021 * 107.27304 * 140.55976 * 4 2 1 6 6 C 1.34776 * 125.64937 * 181.09390 * 5 4 2 7 7 O 1.21548 * 119.99437 * 174.49354 * 6 5 4 8 8 C 1.47866 * 120.00088 * 354.49489 * 6 5 4 9 9 C 1.39456 * 121.11584 * 6.79041 * 8 6 5 10 10 C 1.38619 * 119.37657 * 179.69231 * 9 8 6 11 11 N 1.31591 * 121.63334 * 0.61561 * 10 9 8 12 12 C 1.32212 * 121.86612 * 359.67884 * 11 10 9 13 13 C 1.40864 * 121.11539 * 187.06215 * 8 6 5 14 14 N 1.34389 * 135.14896 * 0.02562 * 13 8 6 15 15 N 1.28694 * 109.15826 * 179.97438 * 14 13 8 16 16 N 1.28783 * 111.75188 * 359.97438 * 15 14 13 17 17 C 1.46502 * 125.86545 * 180.02562 * 16 15 14 18 18 C 1.47422 * 108.70095 * 1.05523 * 5 4 2 19 19 C 1.54911 * 104.83397 * 335.87593 * 18 5 4 20 20 H 1.09009 * 111.00377 * 278.89638 * 19 18 5 21 21 N 1.46499 * 111.00563 * 155.08522 * 19 18 5 22 22 C 1.36939 * 120.00261 * 86.45304 * 21 19 18 23 23 H 1.08002 * 119.99856 * 0.02562 * 22 21 19 24 24 C 1.38806 * 119.99924 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00039 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99785 * 180.27601 * 24 22 21 27 27 H 1.48503 * 109.47058 * 269.72421 * 26 24 22 28 28 H 1.48496 * 109.47321 * 29.72617 * 26 24 22 29 29 H 1.48503 * 109.47092 * 149.72483 * 26 24 22 30 30 H 1.08993 * 109.47343 * 183.23763 * 1 2 3 31 31 H 1.09001 * 109.47094 * 303.24400 * 1 2 3 32 32 H 1.09009 * 109.46640 * 63.24117 * 1 2 3 33 33 H 1.08997 * 109.88486 * 21.13739 * 4 2 1 34 34 H 1.09003 * 110.01032 * 260.04549 * 4 2 1 35 35 H 1.08000 * 120.31016 * 359.97438 * 9 8 6 36 36 H 1.07992 * 119.18504 * 180.29439 * 10 9 8 37 37 H 1.09004 * 109.46799 * 270.00144 * 17 16 15 38 38 H 1.08997 * 109.47168 * 30.00141 * 17 16 15 39 39 H 1.09004 * 109.46812 * 150.00465 * 17 16 15 40 40 H 1.09003 * 110.37066 * 217.03788 * 18 5 4 41 41 H 1.09000 * 110.46302 * 94.75733 * 18 5 4 42 42 H 0.96995 * 119.99848 * 266.45019 * 21 19 18 43 43 H 0.97005 * 119.99880 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7392 6 6 3.9914 -2.3846 1.4897 7 8 4.8763 -3.0387 0.9734 8 6 3.7343 -2.5037 2.9409 9 6 2.6397 -1.8744 3.5330 10 6 2.4294 -2.0155 4.8958 11 7 3.2448 -2.7204 5.6507 12 6 4.3026 -3.3357 5.1502 13 6 4.5901 -3.2520 3.7728 14 7 5.7091 -3.9726 3.5867 15 7 6.0907 -4.4591 4.7154 16 7 5.3013 -4.1173 5.6738 17 6 5.4449 -4.4980 7.0812 18 6 3.4633 -1.2498 -0.6873 19 6 2.0790 -0.7955 -1.2137 20 1 1.4454 -1.6536 -1.4381 21 7 2.2216 0.0695 -2.3875 22 6 2.3176 -0.4823 -3.6371 23 1 2.2878 -1.5552 -3.7573 24 6 2.4522 0.3373 -4.7492 25 7 2.4870 1.6449 -4.6027 26 14 2.5754 -0.4151 -6.4545 27 1 4.0018 -0.6659 -6.7830 28 1 1.8275 -1.6976 -6.4849 29 1 1.9949 0.5202 -7.4513 30 1 -0.3634 -1.0259 0.0580 31 1 -0.3633 0.5634 0.8595 32 1 -0.3633 0.4627 -0.9177 33 1 1.3129 -1.4757 1.5776 34 1 2.3735 -0.1043 1.9997 35 1 1.9597 -1.2863 2.9345 36 1 1.5780 -1.5307 5.3502 37 1 4.9119 -5.4317 7.2611 38 1 6.5009 -4.6315 7.3156 39 1 5.0285 -3.7141 7.7139 40 1 3.7960 -2.1427 -1.2167 41 1 4.1936 -0.4486 -0.8001 42 1 2.2480 1.0331 -2.2795 43 1 2.5806 2.2176 -5.3800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001055014244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:59 Heat of formation + Delta-G solvation = 144.451344 kcal Electronic energy + Delta-G solvation = -27845.553678 eV Core-core repulsion = 23929.998195 eV Total energy + Delta-G solvation = -3915.555484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.60624 -40.41597 -38.93021 -37.63037 -35.28222 -34.39024 -32.89677 -32.20782 -31.15341 -30.69103 -28.34813 -27.80081 -26.79656 -25.49595 -24.11329 -23.85582 -22.50859 -21.41933 -20.12141 -19.61530 -19.21206 -17.79589 -17.41506 -17.26431 -16.98509 -16.18932 -15.65715 -15.23436 -14.87377 -14.70509 -14.22709 -14.00981 -13.77412 -13.61957 -13.44144 -13.30883 -13.05468 -12.85068 -12.83100 -12.70457 -12.48192 -12.00341 -11.75486 -11.64013 -11.31133 -11.12202 -11.04555 -10.76376 -10.66333 -10.34681 -10.24222 -9.95193 -9.76257 -9.58354 -9.50064 -9.21701 -9.03218 -8.44949 -7.10485 -5.86099 -3.16805 -0.17919 0.60249 1.60474 1.97743 2.73467 2.90532 3.32773 3.41289 3.46190 3.47489 3.47926 3.93360 4.03032 4.19043 4.29320 4.49323 4.58145 4.60327 4.68794 4.87118 4.91065 4.96309 5.08505 5.23105 5.28980 5.35899 5.42930 5.49007 5.61048 5.73179 5.79924 5.84746 5.93473 6.05938 6.08983 6.19535 6.32278 6.40905 6.51175 6.55323 6.84379 7.17603 7.59355 7.64821 7.98502 8.20570 8.31480 9.43868 9.95809 10.30657 11.35733 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002660 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.674490 B =10524.208620 C =11496.046377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.089 0.911 4 C 0.092 3.908 5 N -0.603 5.603 6 C 0.559 3.441 7 O -0.505 6.505 8 C -0.001 4.001 9 C -0.178 4.178 10 C 0.158 3.842 11 N -0.461 5.461 12 C 0.208 3.792 13 C 0.002 3.998 14 N -0.214 5.214 15 N -0.008 5.008 16 N -0.312 5.312 17 C 0.092 3.908 18 C 0.081 3.919 19 C 0.177 3.823 20 H 0.067 0.933 21 N -0.709 5.709 22 C -0.248 4.248 23 H 0.073 0.927 24 C -0.007 4.007 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.288 1.288 28 H -0.281 1.281 29 H -0.291 1.291 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.188 0.812 36 H 0.181 0.819 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.387 0.613 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -5.900 25.877 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.107 0.893 4 C -0.031 4.031 5 N -0.337 5.337 6 C 0.346 3.654 7 O -0.379 6.379 8 C -0.018 4.018 9 C -0.201 4.201 10 C -0.015 4.015 11 N -0.175 5.175 12 C -0.034 4.034 13 C -0.127 4.127 14 N -0.088 5.088 15 N 0.010 4.990 16 N -0.114 5.114 17 C -0.049 4.049 18 C -0.044 4.044 19 C 0.065 3.935 20 H 0.084 0.916 21 N -0.349 5.349 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.739 3.261 27 H -0.215 1.215 28 H -0.206 1.206 29 H -0.217 1.217 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.204 0.796 36 H 0.198 0.802 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.465 -7.353 26.034 27.092 hybrid contribution -0.491 0.534 -1.165 1.372 sum -1.956 -6.819 24.869 25.861 Atomic orbital electron populations 1.21699 0.93652 1.01666 1.02375 1.22530 0.96570 1.00011 0.94283 0.89314 1.22641 0.87802 0.94693 0.97951 1.48390 1.29271 1.43301 1.12775 1.17569 0.82506 0.80504 0.84818 1.90876 1.31295 1.43193 1.72564 1.19689 0.93292 0.94817 0.93969 1.23798 0.98407 1.00469 0.97410 1.22884 0.96027 0.92528 0.90016 1.66251 1.02123 1.08650 1.40485 1.19770 0.93992 0.99477 0.90169 1.20128 0.97141 1.02598 0.92846 1.75573 1.09925 1.09814 1.13454 1.78278 1.14160 1.15630 0.90935 1.47026 1.17553 1.36301 1.10500 1.22271 1.05568 1.03110 0.73915 1.23549 1.02079 1.01328 0.77421 1.21390 0.91852 0.93664 0.86629 0.91558 1.42272 1.86812 1.05093 1.00696 1.19239 1.43089 0.91966 0.83561 0.90931 1.24753 1.02242 0.95349 0.98056 1.69653 1.56550 1.02053 1.29447 0.86184 0.77789 0.77991 0.84180 1.21547 1.20629 1.21728 0.92753 0.93010 0.91119 0.90446 0.90709 0.79610 0.80167 0.89126 0.87800 0.87979 0.90615 0.91015 0.77822 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.16 37.16 0.34 -1.21 16 2 C -0.11 -1.51 3.17 -88.79 -0.28 -1.79 16 3 H 0.09 1.21 8.00 -51.93 -0.42 0.80 16 4 C 0.09 1.00 4.48 -3.07 -0.01 0.99 16 5 N -0.60 -9.21 3.33 -171.91 -0.57 -9.78 16 6 C 0.56 9.52 7.82 -12.32 -0.10 9.42 16 7 O -0.50 -10.76 16.53 5.32 0.09 -10.68 16 8 C 0.00 -0.02 5.92 -104.51 -0.62 -0.64 16 9 C -0.18 -1.63 8.70 -38.99 -0.34 -1.97 16 10 C 0.16 1.21 11.14 -17.51 -0.20 1.01 16 11 N -0.46 -4.74 10.35 -12.39 -0.13 -4.86 16 12 C 0.21 2.61 8.08 -156.21 -1.26 1.34 16 13 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 14 N -0.21 -3.67 11.94 32.23 0.38 -3.29 16 15 N -0.01 -0.12 13.07 60.35 0.79 0.67 16 16 N -0.31 -3.49 3.79 -67.22 -0.26 -3.75 16 17 C 0.09 0.49 11.41 59.85 0.68 1.17 16 18 C 0.08 1.48 6.63 -2.53 -0.02 1.46 16 19 C 0.18 3.18 3.13 -65.78 -0.21 2.97 16 20 H 0.07 1.23 8.04 -51.92 -0.42 0.81 16 21 N -0.71 -16.30 5.28 -51.35 -0.27 -16.57 16 22 C -0.25 -6.53 9.98 -15.06 -0.15 -6.68 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -26.90 13.06 55.49 0.72 -26.18 16 26 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.08 0.66 6.39 -51.93 -0.33 0.33 16 34 H 0.08 0.63 6.75 -51.93 -0.35 0.28 16 35 H 0.19 1.24 2.93 -52.86 -0.16 1.09 16 36 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 1.53 7.99 -51.93 -0.41 1.12 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.39 9.41 7.71 -40.82 -0.31 9.09 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -35.82 359.24 -7.02 -42.84 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.32 Total: 4.05 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -2.84 Total: 5.23 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: 0.67 Total: -63.76 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.82 -7.02 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.292 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds