Wall clock time and date at job start Tue Mar 31 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.78174 * 2 1 4 4 C 1.54321 * 110.71610 * 123.23776 * 2 1 3 5 5 N 1.47021 * 107.27304 * 140.55976 * 4 2 1 6 6 C 1.34776 * 125.64937 * 181.09390 * 5 4 2 7 7 O 1.21548 * 119.99437 * 174.49354 * 6 5 4 8 8 C 1.47866 * 120.00088 * 354.49489 * 6 5 4 9 9 C 1.39456 * 121.11584 * 6.79041 * 8 6 5 10 10 C 1.38619 * 119.37657 * 179.69231 * 9 8 6 11 11 N 1.31591 * 121.63334 * 0.61561 * 10 9 8 12 12 C 1.32212 * 121.86612 * 359.67884 * 11 10 9 13 13 C 1.40864 * 121.11539 * 187.06215 * 8 6 5 14 14 N 1.34389 * 135.14896 * 0.02562 * 13 8 6 15 15 N 1.28694 * 109.15826 * 179.97438 * 14 13 8 16 16 N 1.28783 * 111.75188 * 359.97438 * 15 14 13 17 17 C 1.46502 * 125.86545 * 180.02562 * 16 15 14 18 18 C 1.47422 * 108.70095 * 1.05523 * 5 4 2 19 19 C 1.54911 * 104.83397 * 335.87593 * 18 5 4 20 20 H 1.09009 * 111.00377 * 278.89638 * 19 18 5 21 21 N 1.46499 * 111.00563 * 155.08522 * 19 18 5 22 22 C 1.36939 * 120.00261 * 86.45304 * 21 19 18 23 23 H 1.08002 * 119.99856 * 0.02562 * 22 21 19 24 24 C 1.38806 * 119.99924 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00039 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99785 * 180.27601 * 24 22 21 27 27 H 1.48503 * 109.47058 * 269.72421 * 26 24 22 28 28 H 1.48496 * 109.47321 * 29.72617 * 26 24 22 29 29 H 1.48503 * 109.47092 * 149.72483 * 26 24 22 30 30 H 1.08993 * 109.47343 * 183.23763 * 1 2 3 31 31 H 1.09001 * 109.47094 * 303.24400 * 1 2 3 32 32 H 1.09009 * 109.46640 * 63.24117 * 1 2 3 33 33 H 1.08997 * 109.88486 * 21.13739 * 4 2 1 34 34 H 1.09003 * 110.01032 * 260.04549 * 4 2 1 35 35 H 1.08000 * 120.31016 * 359.97438 * 9 8 6 36 36 H 1.07992 * 119.18504 * 180.29439 * 10 9 8 37 37 H 1.09004 * 109.46799 * 270.00144 * 17 16 15 38 38 H 1.08997 * 109.47168 * 30.00141 * 17 16 15 39 39 H 1.09004 * 109.46812 * 150.00465 * 17 16 15 40 40 H 1.09003 * 110.37066 * 217.03788 * 18 5 4 41 41 H 1.09000 * 110.46302 * 94.75733 * 18 5 4 42 42 H 0.96995 * 119.99848 * 266.45019 * 21 19 18 43 43 H 0.97005 * 119.99880 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7392 6 6 3.9914 -2.3846 1.4897 7 8 4.8763 -3.0387 0.9734 8 6 3.7343 -2.5037 2.9409 9 6 2.6397 -1.8744 3.5330 10 6 2.4294 -2.0155 4.8958 11 7 3.2448 -2.7204 5.6507 12 6 4.3026 -3.3357 5.1502 13 6 4.5901 -3.2520 3.7728 14 7 5.7091 -3.9726 3.5867 15 7 6.0907 -4.4591 4.7154 16 7 5.3013 -4.1173 5.6738 17 6 5.4449 -4.4980 7.0812 18 6 3.4633 -1.2498 -0.6873 19 6 2.0790 -0.7955 -1.2137 20 1 1.4454 -1.6536 -1.4381 21 7 2.2216 0.0695 -2.3875 22 6 2.3176 -0.4823 -3.6371 23 1 2.2878 -1.5552 -3.7573 24 6 2.4522 0.3373 -4.7492 25 7 2.4870 1.6449 -4.6027 26 14 2.5754 -0.4151 -6.4545 27 1 4.0018 -0.6659 -6.7830 28 1 1.8275 -1.6976 -6.4849 29 1 1.9949 0.5202 -7.4513 30 1 -0.3634 -1.0259 0.0580 31 1 -0.3633 0.5634 0.8595 32 1 -0.3633 0.4627 -0.9177 33 1 1.3129 -1.4757 1.5776 34 1 2.3735 -0.1043 1.9997 35 1 1.9597 -1.2863 2.9345 36 1 1.5780 -1.5307 5.3502 37 1 4.9119 -5.4317 7.2611 38 1 6.5009 -4.6315 7.3156 39 1 5.0285 -3.7141 7.7139 40 1 3.7960 -2.1427 -1.2167 41 1 4.1936 -0.4486 -0.8001 42 1 2.2480 1.0331 -2.2795 43 1 2.5806 2.2176 -5.3800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001055014244.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:58 Heat of formation + Delta-G solvation = 116.787911 kcal Electronic energy + Delta-G solvation = -27846.753255 eV Core-core repulsion = 23929.998195 eV Total energy + Delta-G solvation = -3916.755060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.50131 -41.56745 -39.86128 -38.95600 -36.14505 -36.05330 -34.21019 -33.26851 -32.45594 -31.92935 -29.41307 -28.88302 -27.80472 -26.55324 -25.75906 -24.74547 -23.74862 -22.55936 -21.43601 -20.67330 -20.11871 -19.22728 -18.63200 -18.18991 -18.12741 -17.50615 -16.64317 -16.44956 -16.29645 -15.77043 -15.59442 -15.31549 -14.74744 -14.63350 -14.53184 -14.34915 -14.08421 -14.05901 -13.94567 -13.75262 -13.42696 -13.14274 -13.01663 -12.89206 -12.83822 -12.56865 -12.19964 -12.16743 -12.07970 -11.94800 -11.65038 -11.47892 -11.26869 -10.97938 -10.55253 -10.32966 -10.13896 -9.73942 -9.05446 -7.97112 -5.25823 -1.07215 -0.18514 0.90266 0.96639 1.46636 1.48805 1.55821 1.66271 1.72035 2.51796 2.54063 2.56038 3.10591 3.16003 3.30154 3.36752 3.49854 3.64684 3.82105 3.94180 4.08901 4.20087 4.21015 4.25059 4.33240 4.37447 4.46476 4.54916 4.55321 4.61099 4.66768 4.76034 4.91440 4.94386 5.08088 5.11035 5.19750 5.26730 5.38737 5.41782 5.53761 5.61417 6.25248 6.38291 6.41748 6.95129 7.04456 7.33177 8.04990 8.28968 9.25252 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.023451 B = 0.002660 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.674490 B =10524.208620 C =11496.046377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 H 0.085 0.915 4 C 0.087 3.913 5 N -0.599 5.599 6 C 0.555 3.445 7 O -0.568 6.568 8 C -0.038 4.038 9 C -0.139 4.139 10 C 0.177 3.823 11 N -0.456 5.456 12 C 0.199 3.801 13 C -0.029 4.029 14 N -0.276 5.276 15 N -0.027 5.027 16 N -0.297 5.297 17 C 0.078 3.922 18 C 0.090 3.910 19 C 0.171 3.829 20 H 0.062 0.938 21 N -0.718 5.718 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.066 4.066 25 N -0.962 5.962 26 Si 0.965 3.035 27 H -0.293 1.293 28 H -0.271 1.271 29 H -0.292 1.292 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.218 0.782 36 H 0.244 0.756 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.379 0.621 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.358 -5.343 29.774 30.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.121 4.121 3 H 0.104 0.896 4 C -0.034 4.034 5 N -0.332 5.332 6 C 0.344 3.656 7 O -0.447 6.447 8 C -0.054 4.054 9 C -0.162 4.162 10 C 0.003 3.997 11 N -0.170 5.170 12 C -0.042 4.042 13 C -0.160 4.160 14 N -0.149 5.149 15 N -0.008 5.008 16 N -0.100 5.100 17 C -0.060 4.060 18 C -0.036 4.036 19 C 0.060 3.940 20 H 0.080 0.920 21 N -0.357 5.357 22 C -0.376 4.376 23 H 0.089 0.911 24 C -0.259 4.259 25 N -0.612 5.612 26 Si 0.794 3.206 27 H -0.221 1.221 28 H -0.196 1.196 29 H -0.218 1.218 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.234 0.766 36 H 0.260 0.740 37 H 0.129 0.871 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.212 0.788 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.597 -6.839 29.998 31.109 hybrid contribution 0.402 0.358 -2.197 2.262 sum -4.195 -6.481 27.801 28.853 Atomic orbital electron populations 1.21682 0.91577 1.02891 1.02700 1.22459 0.98136 0.99271 0.92284 0.89640 1.23077 0.86934 0.95588 0.97758 1.48355 1.30343 1.43312 1.11189 1.18162 0.81549 0.79522 0.86344 1.90833 1.34027 1.45774 1.74031 1.19532 0.96021 0.98118 0.91717 1.24213 0.95911 0.97676 0.98357 1.23984 0.96185 0.90388 0.89142 1.66476 1.01411 1.08558 1.40537 1.19924 0.94940 1.00239 0.89134 1.20513 0.97315 1.03435 0.94781 1.75473 1.12097 1.12160 1.15147 1.78147 1.15113 1.16346 0.91202 1.47501 1.16282 1.34559 1.11619 1.22798 1.07395 1.04693 0.71122 1.23110 1.01668 0.99032 0.79799 1.21561 0.91545 0.93814 0.87066 0.91999 1.42359 1.86861 1.05207 1.01268 1.19537 1.40989 0.91934 0.85118 0.91130 1.25440 1.03390 0.95833 1.01243 1.69776 1.58593 1.03008 1.29815 0.85276 0.77299 0.77547 0.80455 1.22073 1.19563 1.21848 0.91544 0.88896 0.94141 0.86405 0.86604 0.76579 0.74046 0.87138 0.86110 0.86001 0.93974 0.93136 0.78765 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.16 71.98 0.66 -1.81 16 2 C -0.10 -2.42 3.17 -9.61 -0.03 -2.45 16 3 H 0.09 2.13 8.00 -2.39 -0.02 2.11 16 4 C 0.09 1.52 4.48 86.73 0.39 1.91 16 5 N -0.60 -17.93 3.33 -816.09 -2.71 -20.64 16 6 C 0.56 19.29 7.82 86.79 0.68 19.97 16 7 O -0.57 -26.14 16.53 -3.87 -0.06 -26.21 16 8 C -0.04 -1.01 5.92 -19.79 -0.12 -1.13 16 9 C -0.14 -1.82 8.70 22.65 0.20 -1.62 16 10 C 0.18 1.56 11.14 84.82 0.94 2.50 16 11 N -0.46 -7.33 10.35 -193.10 -2.00 -9.33 16 12 C 0.20 4.63 8.08 134.17 1.08 5.72 16 13 C -0.03 -0.91 6.97 40.06 0.28 -0.63 16 14 N -0.28 -10.08 11.94 -51.94 -0.62 -10.70 16 15 N -0.03 -0.79 13.07 37.02 0.48 -0.31 16 16 N -0.30 -6.36 3.79 -366.59 -1.39 -7.75 16 17 C 0.08 0.64 11.41 127.77 1.46 2.10 16 18 C 0.09 3.43 6.63 86.86 0.58 4.01 16 19 C 0.17 6.16 3.13 46.38 0.15 6.30 16 20 H 0.06 2.29 8.04 -2.38 -0.02 2.27 16 21 N -0.72 -33.84 5.28 -316.37 -1.67 -35.51 16 22 C -0.24 -13.19 9.98 84.03 0.84 -12.35 16 23 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 24 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 25 N -0.96 -57.06 13.06 21.65 0.28 -56.78 16 26 Si 0.96 46.05 29.55 68.60 2.03 48.07 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 29 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 30 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.12 1.21 6.39 -2.39 -0.02 1.20 16 34 H 0.12 1.21 6.75 -2.39 -0.02 1.20 16 35 H 0.22 1.29 2.93 -3.26 -0.01 1.28 16 36 H 0.24 -0.81 8.06 -2.91 -0.02 -0.83 16 37 H 0.11 0.52 8.14 -2.38 -0.02 0.51 16 38 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.04 1.85 7.99 -2.39 -0.02 1.83 16 41 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.38 18.92 7.71 -92.71 -0.71 18.20 16 43 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 Total: -1.00 -88.66 359.24 2.26 -86.40 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.36 Total: 13.47 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 7.57 Total: 19.28 kcal Atomic # 7 Polarization: -133.39 SS G_CDS: -7.63 Total: -141.02 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.21 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -88.66 2.26 -86.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001055014244.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.188 kcal (2) G-P(sol) polarization free energy of solvation -88.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds