Wall clock time and date at job start Tue Mar 31 2020 05:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34264 * 125.75097 * 2 1 4 4 C 1.38046 * 107.41370 * 179.97438 * 3 2 1 5 5 C 1.47431 * 126.41181 * 180.02562 * 4 3 2 6 6 O 1.21603 * 119.99936 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99924 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99618 * 179.97438 * 7 5 4 9 9 C 1.50708 * 109.46597 * 179.97438 * 8 7 5 10 10 C 1.40070 * 126.12247 * 259.68784 * 9 8 7 11 11 N 1.31005 * 108.25358 * 179.85549 * 10 9 8 12 12 N 1.39744 * 108.17679 * 0.60607 * 11 10 9 13 13 C 1.34638 * 126.12599 * 80.00348 * 9 8 7 14 14 C 1.51042 * 127.91168 * 359.64547 * 13 9 8 15 15 N 1.47491 * 107.00142 * 169.52927 * 14 13 9 16 16 C 1.36936 * 121.01458 * 222.90189 * 15 14 13 17 17 H 1.07999 * 120.00323 * 155.91606 * 16 15 14 18 18 C 1.38813 * 119.99973 * 335.92075 * 16 15 14 19 19 N 1.31619 * 119.99777 * 344.45005 * 18 16 15 20 20 Si 1.86802 * 120.00254 * 164.44998 * 18 16 15 21 21 H 1.48497 * 109.46922 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47111 * 119.99882 * 20 18 16 23 23 H 1.48499 * 109.47199 * 239.99962 * 20 18 16 24 24 C 1.47090 * 117.97832 * 42.93012 * 15 14 13 25 25 C 1.46555 * 127.32550 * 179.18716 * 12 11 10 26 26 C 1.41287 * 107.17392 * 0.02562 * 4 3 2 27 27 N 1.30451 * 108.02365 * 0.02562 * 26 4 3 28 28 H 1.08999 * 109.47424 * 89.99718 * 1 2 3 29 29 H 1.09001 * 109.46820 * 209.99586 * 1 2 3 30 30 H 1.08998 * 109.47179 * 329.99107 * 1 2 3 31 31 H 1.07992 * 126.29364 * 359.96776 * 3 2 1 32 32 H 0.96995 * 119.99958 * 359.97438 * 7 5 4 33 33 H 1.08993 * 109.47310 * 299.99537 * 8 7 5 34 34 H 1.08998 * 109.46875 * 60.00268 * 8 7 5 35 35 H 1.08006 * 125.87208 * 0.04193 * 10 9 8 36 36 H 1.08997 * 109.94969 * 288.90954 * 14 13 9 37 37 H 1.09003 * 109.94518 * 50.15587 * 14 13 9 38 38 H 0.96995 * 119.99998 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.51460 * 56.33595 * 24 15 14 40 40 H 1.08997 * 109.51414 * 176.49946 * 24 15 14 41 41 H 1.09002 * 109.50822 * 41.59289 * 25 12 11 42 42 H 1.08997 * 109.50694 * 281.45830 * 25 12 11 43 43 H 1.08004 * 125.98927 * 179.73338 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0006 5 6 4.7637 1.5062 0.0013 6 8 4.6524 2.7172 0.0010 7 7 5.9877 0.9420 0.0024 8 6 7.1841 1.7876 0.0026 9 6 8.4143 0.9171 0.0044 10 6 9.2045 0.6066 1.1185 11 7 10.1793 -0.1751 0.7252 12 7 10.0489 -0.3755 -0.6517 13 6 8.9542 0.3035 -1.0655 14 6 8.4665 0.3303 -2.4948 15 7 9.5256 -0.2757 -3.3233 16 6 9.8865 0.2775 -4.5228 17 1 10.8703 0.0931 -4.9284 18 6 8.9878 1.0754 -5.2175 19 7 7.7108 1.0592 -4.8990 20 14 9.5907 2.1721 -6.6042 21 1 11.0579 2.0076 -6.7632 22 1 8.9106 1.7910 -7.8681 23 1 9.2827 3.5892 -6.2842 24 6 10.1821 -1.4929 -2.8221 25 6 10.9239 -1.1667 -1.5213 26 6 3.5311 -0.7572 0.0003 27 7 2.2826 -1.1356 -0.0009 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.9165 2.1170 -0.0005 32 1 6.0765 -0.0239 0.0030 33 1 7.1848 2.4163 -0.8878 34 1 7.1836 2.4174 0.8922 35 1 9.0369 0.9500 2.1288 36 1 7.5471 -0.2480 -2.5849 37 1 8.2918 1.3594 -2.8088 38 1 7.0828 1.6170 -5.3841 39 1 9.4310 -2.2591 -2.6305 40 1 10.8923 -1.8557 -3.5651 41 1 11.1979 -2.0930 -1.0163 42 1 11.8239 -0.5955 -1.7489 43 1 4.3919 -1.4095 -0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069852268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:27 Heat of formation + Delta-G solvation = 150.943946 kcal Electronic energy + Delta-G solvation = -27903.166716 eV Core-core repulsion = 23987.892772 eV Total energy + Delta-G solvation = -3915.273943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37273 -40.93719 -38.74041 -36.28405 -34.66309 -33.57620 -32.91688 -31.27553 -30.38737 -30.17860 -28.84601 -27.24651 -25.97253 -24.79188 -23.50210 -22.44945 -21.71227 -21.06676 -20.10866 -19.85550 -18.46103 -17.84516 -16.69999 -16.21908 -15.76978 -15.71353 -15.49951 -15.11721 -14.75443 -14.62249 -14.44107 -13.87234 -13.67238 -13.49881 -13.26443 -13.21331 -12.99148 -12.94806 -12.77673 -12.42175 -12.38516 -11.67476 -11.56824 -11.27788 -11.13535 -10.96718 -10.86322 -10.70469 -10.15820 -10.14611 -10.06516 -9.68833 -9.66119 -8.89336 -8.84357 -8.53955 -8.49756 -7.89533 -7.06243 -5.99393 -3.42194 1.52748 2.19357 2.22629 2.46122 2.99990 3.05964 3.30243 3.38508 3.39982 3.71447 3.89024 4.33089 4.34579 4.67891 4.82947 4.87637 4.99095 5.08605 5.09544 5.20307 5.23334 5.39191 5.40841 5.54684 5.58867 5.63607 5.71699 5.79903 5.90348 6.20600 6.24546 6.33568 6.42692 6.44014 6.59012 6.68955 6.82989 6.94985 7.12329 7.18424 7.44064 7.59896 7.63412 7.93674 8.11407 8.26699 8.61590 8.94057 9.56442 10.09067 11.11414 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003679 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.685911 B = 7608.929462 C = 9074.561367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.369 5.369 3 C 0.124 3.876 4 C -0.285 4.285 5 C 0.594 3.406 6 O -0.557 6.557 7 N -0.714 5.714 8 C 0.212 3.788 9 C -0.288 4.288 10 C 0.056 3.944 11 N -0.319 5.319 12 N -0.358 5.358 13 C 0.120 3.880 14 C 0.231 3.769 15 N -0.597 5.597 16 C -0.264 4.264 17 H 0.074 0.926 18 C 0.009 3.991 19 N -0.902 5.902 20 Si 0.907 3.093 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.286 1.286 24 C 0.129 3.871 25 C 0.114 3.886 26 C 0.085 3.915 27 N -0.301 5.301 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.188 0.812 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.175 0.825 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.259 0.741 39 H 0.036 0.964 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 -3.108 10.769 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.148 5.148 3 C -0.027 4.027 4 C -0.300 4.300 5 C 0.381 3.619 6 O -0.437 6.437 7 N -0.364 5.364 8 C 0.089 3.911 9 C -0.300 4.300 10 C -0.130 4.130 11 N -0.139 5.139 12 N -0.139 5.139 13 C -0.012 4.012 14 C 0.104 3.896 15 N -0.319 5.319 16 C -0.392 4.392 17 H 0.091 0.909 18 C -0.191 4.191 19 N -0.545 5.545 20 Si 0.737 3.263 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.001 3.999 25 C -0.010 4.010 26 C -0.103 4.103 27 N -0.121 5.121 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.205 0.795 32 H 0.232 0.768 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.192 0.808 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.579 -3.914 10.924 15.047 hybrid contribution 0.202 1.193 -0.936 1.530 sum -9.376 -2.721 9.988 13.967 Atomic orbital electron populations 1.21953 0.73705 1.04759 1.03865 1.48392 1.07126 1.03951 1.55303 1.22952 0.90169 0.93628 0.95999 1.20350 0.93672 0.93541 1.22462 1.17173 0.82226 0.86809 0.75717 1.90749 1.86988 1.14172 1.51778 1.45946 1.05138 1.10457 1.74847 1.19293 0.79197 0.90541 1.02117 1.19440 1.04208 1.13539 0.92798 1.23675 0.93253 0.96973 0.99122 1.77163 1.23885 1.22039 0.90785 1.48492 1.21583 1.38767 1.05095 1.22582 0.87663 0.91818 0.99147 1.19923 0.89987 1.01435 0.78243 1.44211 1.42241 1.25160 1.20308 1.19192 0.97049 1.26954 0.96054 0.90857 1.25035 0.94776 1.01114 0.98157 1.69950 1.00780 1.40815 1.42967 0.86151 0.78249 0.80533 0.81393 1.20189 1.21493 1.21237 1.21271 0.96389 0.90150 0.92138 1.22542 0.93253 0.94228 0.90962 1.24096 0.95255 0.94099 0.96845 1.77168 1.01999 1.07761 1.25194 0.90274 0.89009 0.89132 0.79542 0.76839 0.90818 0.91326 0.80754 0.92523 0.87302 0.93098 0.94603 0.89766 0.90226 0.90636 0.79349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.44 59.84 0.68 1.26 16 2 N -0.37 -3.97 3.98 -67.60 -0.27 -4.24 16 3 C 0.12 1.44 11.30 -16.56 -0.19 1.25 16 4 C -0.29 -3.92 6.13 -105.07 -0.64 -4.56 16 5 C 0.59 9.53 7.81 -12.52 -0.10 9.43 16 6 O -0.56 -10.64 16.90 5.28 0.09 -10.55 16 7 N -0.71 -10.71 5.54 -62.56 -0.35 -11.05 16 8 C 0.21 3.44 5.95 -5.19 -0.03 3.41 16 9 C -0.29 -4.96 5.46 -105.21 -0.57 -5.54 16 10 C 0.06 0.92 11.97 -17.22 -0.21 0.71 16 11 N -0.32 -5.86 12.61 30.70 0.39 -5.47 16 12 N -0.36 -6.83 4.03 -56.93 -0.23 -7.06 16 13 C 0.12 2.35 6.71 -82.17 -0.55 1.80 16 14 C 0.23 5.18 5.11 -4.48 -0.02 5.16 16 15 N -0.60 -13.85 3.01 -172.97 -0.52 -14.37 16 16 C -0.26 -6.74 9.67 -15.06 -0.15 -6.89 16 17 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 18 C 0.01 0.23 5.00 -17.43 -0.09 0.14 16 19 N -0.90 -24.62 11.07 55.49 0.61 -24.01 16 20 Si 0.91 20.86 29.58 -169.99 -5.03 15.83 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.13 2.40 6.49 -3.59 -0.02 2.38 16 25 C 0.11 1.93 7.44 -3.88 -0.03 1.90 16 26 C 0.08 1.07 11.50 -16.98 -0.20 0.88 16 27 N -0.30 -3.93 12.50 30.86 0.39 -3.54 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.19 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.40 5.35 7.42 -40.82 -0.30 5.05 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.18 2.21 8.06 -52.48 -0.42 1.79 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.11 2.77 6.46 -51.93 -0.34 2.43 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.19 1.91 7.50 -52.48 -0.39 1.52 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -33.59 367.43 -7.13 -40.72 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -5.64 Total: 6.88 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: -2.11 Total: 11.32 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: 0.02 Total: -69.75 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.59 -7.13 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069852268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.669 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds