Wall clock time and date at job start Tue Mar 31 2020 05:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34264 * 125.75097 * 2 1 4 4 C 1.38046 * 107.41370 * 179.97438 * 3 2 1 5 5 C 1.47431 * 126.41181 * 180.02562 * 4 3 2 6 6 O 1.21603 * 119.99936 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99924 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99618 * 179.97438 * 7 5 4 9 9 C 1.50708 * 109.46597 * 179.97438 * 8 7 5 10 10 C 1.40070 * 126.12247 * 259.68784 * 9 8 7 11 11 N 1.31005 * 108.25358 * 179.85549 * 10 9 8 12 12 N 1.39744 * 108.17679 * 0.60607 * 11 10 9 13 13 C 1.34638 * 126.12599 * 80.00348 * 9 8 7 14 14 C 1.51042 * 127.91168 * 359.64547 * 13 9 8 15 15 N 1.47491 * 107.00142 * 169.52927 * 14 13 9 16 16 C 1.36936 * 121.01458 * 222.90189 * 15 14 13 17 17 H 1.07999 * 120.00323 * 155.91606 * 16 15 14 18 18 C 1.38813 * 119.99973 * 335.92075 * 16 15 14 19 19 N 1.31619 * 119.99777 * 344.45005 * 18 16 15 20 20 Si 1.86802 * 120.00254 * 164.44998 * 18 16 15 21 21 H 1.48497 * 109.46922 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47111 * 119.99882 * 20 18 16 23 23 H 1.48499 * 109.47199 * 239.99962 * 20 18 16 24 24 C 1.47090 * 117.97832 * 42.93012 * 15 14 13 25 25 C 1.46555 * 127.32550 * 179.18716 * 12 11 10 26 26 C 1.41287 * 107.17392 * 0.02562 * 4 3 2 27 27 N 1.30451 * 108.02365 * 0.02562 * 26 4 3 28 28 H 1.08999 * 109.47424 * 89.99718 * 1 2 3 29 29 H 1.09001 * 109.46820 * 209.99586 * 1 2 3 30 30 H 1.08998 * 109.47179 * 329.99107 * 1 2 3 31 31 H 1.07992 * 126.29364 * 359.96776 * 3 2 1 32 32 H 0.96995 * 119.99958 * 359.97438 * 7 5 4 33 33 H 1.08993 * 109.47310 * 299.99537 * 8 7 5 34 34 H 1.08998 * 109.46875 * 60.00268 * 8 7 5 35 35 H 1.08006 * 125.87208 * 0.04193 * 10 9 8 36 36 H 1.08997 * 109.94969 * 288.90954 * 14 13 9 37 37 H 1.09003 * 109.94518 * 50.15587 * 14 13 9 38 38 H 0.96995 * 119.99998 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.51460 * 56.33595 * 24 15 14 40 40 H 1.08997 * 109.51414 * 176.49946 * 24 15 14 41 41 H 1.09002 * 109.50822 * 41.59289 * 25 12 11 42 42 H 1.08997 * 109.50694 * 281.45830 * 25 12 11 43 43 H 1.08004 * 125.98927 * 179.73338 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0006 5 6 4.7637 1.5062 0.0013 6 8 4.6524 2.7172 0.0010 7 7 5.9877 0.9420 0.0024 8 6 7.1841 1.7876 0.0026 9 6 8.4143 0.9171 0.0044 10 6 9.2045 0.6066 1.1185 11 7 10.1793 -0.1751 0.7252 12 7 10.0489 -0.3755 -0.6517 13 6 8.9542 0.3035 -1.0655 14 6 8.4665 0.3303 -2.4948 15 7 9.5256 -0.2757 -3.3233 16 6 9.8865 0.2775 -4.5228 17 1 10.8703 0.0931 -4.9284 18 6 8.9878 1.0754 -5.2175 19 7 7.7108 1.0592 -4.8990 20 14 9.5907 2.1721 -6.6042 21 1 11.0579 2.0076 -6.7632 22 1 8.9106 1.7910 -7.8681 23 1 9.2827 3.5892 -6.2842 24 6 10.1821 -1.4929 -2.8221 25 6 10.9239 -1.1667 -1.5213 26 6 3.5311 -0.7572 0.0003 27 7 2.2826 -1.1356 -0.0009 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 1.9165 2.1170 -0.0005 32 1 6.0765 -0.0239 0.0030 33 1 7.1848 2.4163 -0.8878 34 1 7.1836 2.4174 0.8922 35 1 9.0369 0.9500 2.1288 36 1 7.5471 -0.2480 -2.5849 37 1 8.2918 1.3594 -2.8088 38 1 7.0828 1.6170 -5.3841 39 1 9.4310 -2.2591 -2.6305 40 1 10.8923 -1.8557 -3.5651 41 1 11.1979 -2.0930 -1.0163 42 1 11.8239 -0.5955 -1.7489 43 1 4.3919 -1.4095 -0.0034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069852268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:26 Heat of formation + Delta-G solvation = 127.347619 kcal Electronic energy + Delta-G solvation = -27904.189929 eV Core-core repulsion = 23987.892772 eV Total energy + Delta-G solvation = -3916.297157 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43069 -42.25259 -40.00460 -37.94559 -36.03259 -34.65976 -34.29181 -32.86443 -31.81272 -31.40520 -30.20978 -28.19846 -27.58920 -26.16555 -25.11791 -23.63916 -23.18704 -21.96012 -21.51517 -21.01834 -19.96109 -18.96437 -18.52244 -17.61322 -16.99873 -16.71740 -16.65695 -16.57358 -16.27663 -15.80658 -15.51446 -15.44819 -15.25928 -14.95212 -14.69668 -14.52233 -14.07833 -13.95799 -13.77992 -13.46456 -13.42147 -13.33464 -13.03126 -12.93320 -12.74627 -12.59106 -12.30856 -12.11169 -12.01382 -11.87292 -11.57727 -10.94619 -10.77230 -10.56059 -10.05724 -10.03336 -9.58347 -9.35988 -8.93521 -7.97363 -5.41038 0.57826 0.96315 1.17280 1.45541 1.46646 1.49169 1.57340 1.63329 1.73236 2.45849 2.53100 2.68572 3.21841 3.45134 3.56175 3.64347 3.84742 3.86149 4.11876 4.18263 4.21374 4.24160 4.27922 4.40077 4.44173 4.51047 4.60169 4.71087 4.72859 4.80505 4.85888 4.90801 4.98676 5.05508 5.28022 5.39249 5.40447 5.56638 5.60110 5.79525 5.90592 6.12217 6.21775 6.50502 6.73390 6.83646 7.00684 7.37845 7.66996 8.18152 9.11897 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010377 B = 0.003679 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.685911 B = 7608.929462 C = 9074.561367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.362 5.362 3 C 0.132 3.868 4 C -0.316 4.316 5 C 0.593 3.407 6 O -0.594 6.594 7 N -0.708 5.708 8 C 0.219 3.781 9 C -0.274 4.274 10 C 0.068 3.932 11 N -0.327 5.327 12 N -0.367 5.367 13 C 0.096 3.904 14 C 0.250 3.750 15 N -0.616 5.616 16 C -0.267 4.267 17 H 0.079 0.921 18 C -0.042 4.042 19 N -0.931 5.931 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.294 1.294 24 C 0.128 3.872 25 C 0.117 3.883 26 C 0.084 3.916 27 N -0.325 5.325 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.121 0.879 31 H 0.210 0.790 32 H 0.405 0.595 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.215 0.785 36 H 0.035 0.965 37 H 0.072 0.928 38 H 0.252 0.748 39 H 0.040 0.960 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.076 0.924 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.556 -3.682 12.183 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.141 5.141 3 C -0.021 4.021 4 C -0.330 4.330 5 C 0.382 3.618 6 O -0.477 6.477 7 N -0.357 5.357 8 C 0.094 3.906 9 C -0.286 4.286 10 C -0.119 4.119 11 N -0.147 5.147 12 N -0.149 5.149 13 C -0.036 4.036 14 C 0.123 3.877 15 N -0.340 5.340 16 C -0.396 4.396 17 H 0.097 0.903 18 C -0.238 4.238 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.218 1.218 23 H -0.221 1.221 24 C 0.001 3.999 25 C -0.005 4.005 26 C -0.104 4.104 27 N -0.146 5.146 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.227 0.773 32 H 0.241 0.759 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.232 0.768 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.094 0.906 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -9.530 -4.557 12.348 16.249 hybrid contribution 0.128 1.334 -1.320 1.881 sum -9.402 -3.222 11.027 14.845 Atomic orbital electron populations 1.22399 0.70871 1.06752 1.05241 1.48790 1.08647 1.03044 1.53570 1.23323 0.89696 0.94774 0.94268 1.20285 0.93618 0.93883 1.25263 1.17501 0.82919 0.86588 0.74785 1.90717 1.87501 1.15715 1.53741 1.45829 1.04701 1.10734 1.74465 1.19155 0.79473 0.90444 1.01479 1.19537 1.04065 1.12333 0.92642 1.24250 0.91714 0.95595 1.00307 1.77159 1.24604 1.22736 0.90170 1.48675 1.21509 1.39048 1.05620 1.22197 0.89211 0.93980 0.98169 1.19338 0.89465 0.98819 0.80068 1.44446 1.42532 1.26964 1.20008 1.19524 0.97095 1.26434 0.96533 0.90293 1.25714 0.94940 1.02656 1.00530 1.70100 1.01664 1.41686 1.44143 0.85251 0.78300 0.78328 0.78829 1.18881 1.21760 1.22140 1.21437 0.96588 0.88502 0.93365 1.22526 0.92403 0.95489 0.90097 1.24339 0.95818 0.93881 0.96323 1.77118 1.02319 1.09124 1.25996 0.89152 0.88190 0.86075 0.77315 0.75921 0.93806 0.89620 0.76826 0.94758 0.91039 0.93902 0.94169 0.88295 0.87006 0.90551 0.77915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.44 127.77 1.46 2.26 16 2 N -0.36 -7.24 3.98 -367.80 -1.46 -8.70 16 3 C 0.13 2.93 11.30 84.28 0.95 3.88 16 4 C -0.32 -8.62 6.13 -20.15 -0.12 -8.74 16 5 C 0.59 19.32 7.81 86.66 0.68 20.00 16 6 O -0.59 -23.13 16.90 -4.04 -0.07 -23.20 16 7 N -0.71 -21.47 5.54 -470.09 -2.60 -24.07 16 8 C 0.22 7.15 5.95 85.63 0.51 7.66 16 9 C -0.27 -9.25 5.46 -20.24 -0.11 -9.36 16 10 C 0.07 2.03 11.97 85.26 1.02 3.05 16 11 N -0.33 -11.22 12.61 -56.80 -0.72 -11.94 16 12 N -0.37 -13.49 4.03 -334.03 -1.35 -14.84 16 13 C 0.10 3.77 6.71 41.31 0.28 4.05 16 14 C 0.25 11.66 5.11 85.55 0.44 12.09 16 15 N -0.62 -28.95 3.01 -701.16 -2.11 -31.07 16 16 C -0.27 -13.75 9.67 84.03 0.81 -12.94 16 17 H 0.08 3.90 7.88 -2.91 -0.02 3.87 16 18 C -0.04 -2.26 5.00 84.86 0.42 -1.83 16 19 N -0.93 -52.83 11.07 21.65 0.24 -52.59 16 20 Si 0.96 43.63 29.58 68.60 2.03 45.66 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.13 4.65 6.49 86.35 0.56 5.21 16 25 C 0.12 3.77 7.44 86.46 0.64 4.41 16 26 C 0.08 2.08 11.50 85.65 0.99 3.07 16 27 N -0.33 -8.20 12.50 -56.27 -0.70 -8.90 16 28 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.21 3.50 8.06 -2.91 -0.02 3.48 16 32 H 0.41 10.96 7.42 -92.71 -0.69 10.27 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.22 4.54 8.06 -2.91 -0.02 4.52 16 36 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.07 3.85 6.46 -2.39 -0.02 3.84 16 38 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 3.25 7.94 -2.39 -0.02 3.23 16 41 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.20 4.08 7.50 -2.91 -0.02 4.06 16 Total: -1.00 -73.95 367.43 2.14 -71.80 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.36 Total: 25.03 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 8.53 Total: 32.82 kcal Atomic # 7 Polarization: -143.39 SS G_CDS: -8.71 Total: -152.10 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.07 Total: -23.20 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.95 2.14 -71.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069852268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.149 kcal (2) G-P(sol) polarization free energy of solvation -73.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds