Wall clock time and date at job start Tue Mar 31 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28447 * 125.18972 * 2 1 4 4 C 1.30860 * 110.92775 * 179.97438 * 3 2 1 5 5 C 1.39677 * 107.86208 * 0.25754 * 4 3 2 6 6 C 1.36602 * 125.19199 * 179.97438 * 2 1 3 7 7 C 1.47159 * 126.88337 * 359.97438 * 6 2 1 8 8 O 1.21633 * 120.00275 * 4.38542 * 7 6 2 9 9 N 1.34782 * 120.00040 * 184.38669 * 7 6 2 10 10 C 1.46499 * 119.99900 * 184.47069 * 9 7 6 11 11 C 1.50696 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.40076 * 126.12555 * 259.68786 * 11 10 9 13 13 N 1.31015 * 108.25287 * 179.85536 * 12 11 10 14 14 N 1.39748 * 108.17653 * 0.60511 * 13 12 11 15 15 C 1.34643 * 126.12663 * 80.00210 * 11 10 9 16 16 C 1.51040 * 127.90871 * 359.64808 * 15 11 10 17 17 N 1.47500 * 107.00193 * 169.53085 * 16 15 11 18 18 C 1.36931 * 121.01235 * 222.90151 * 17 16 15 19 19 H 1.08008 * 120.00051 * 159.63039 * 18 17 16 20 20 C 1.38810 * 120.00042 * 339.62990 * 18 17 16 21 21 N 1.31611 * 120.00297 * 346.13107 * 20 18 17 22 22 Si 1.86807 * 120.00068 * 166.12703 * 20 18 17 23 23 H 1.48504 * 109.46933 * 60.00210 * 22 20 18 24 24 H 1.48498 * 109.47286 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47162 * 300.00500 * 22 20 18 26 26 C 1.47090 * 117.97639 * 42.92180 * 17 16 15 27 27 C 1.46549 * 127.31900 * 179.18469 * 14 13 12 28 28 H 1.08996 * 109.46858 * 95.34043 * 1 2 3 29 29 H 1.09006 * 109.46842 * 215.33742 * 1 2 3 30 30 H 1.08998 * 109.46957 * 335.33889 * 1 2 3 31 31 H 1.08001 * 126.06952 * 180.02562 * 4 3 2 32 32 H 1.08002 * 127.31806 * 179.74286 * 5 4 3 33 33 H 0.97000 * 119.99721 * 4.46604 * 9 7 6 34 34 H 1.08995 * 109.46794 * 299.99718 * 10 9 7 35 35 H 1.08997 * 109.47261 * 59.99394 * 10 9 7 36 36 H 1.07993 * 125.87285 * 0.03729 * 12 11 10 37 37 H 1.09003 * 109.94678 * 288.90430 * 16 15 11 38 38 H 1.08998 * 109.94944 * 50.15575 * 16 15 11 39 39 H 0.96999 * 120.00644 * 179.97438 * 21 20 18 40 40 H 1.09004 * 109.51348 * 56.34712 * 26 17 16 41 41 H 1.09004 * 109.51177 * 176.49719 * 26 17 16 42 42 H 1.09005 * 109.50854 * 41.60087 * 27 14 13 43 43 H 1.08997 * 109.51387 * 281.45524 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 0.0005 5 6 3.5612 -0.6667 -0.0050 6 6 2.2523 -1.1163 0.0005 7 6 1.7994 -2.5165 0.0017 8 8 0.6129 -2.7720 -0.0783 9 7 2.6993 -3.5158 0.0913 10 6 2.2584 -4.9095 -0.0060 11 6 3.4497 -5.8233 0.1236 12 6 4.1254 -6.4536 -0.9291 13 7 5.1049 -7.1613 -0.4227 14 7 5.0751 -7.0152 0.9668 15 6 4.0515 -6.1849 1.2725 16 6 3.6933 -5.7673 2.6791 17 7 4.4750 -6.6198 3.5944 18 6 3.9035 -7.1623 4.7142 19 1 4.3542 -8.0218 5.1882 20 6 2.7448 -6.6077 5.2402 21 7 2.3459 -5.4178 4.8437 22 14 1.7514 -7.5503 6.5108 23 1 2.5962 -7.8142 7.7033 24 1 0.5682 -6.7466 6.9098 25 1 1.2999 -8.8399 5.9289 26 6 5.8874 -6.8690 3.2679 27 6 5.9712 -7.6380 1.9450 28 1 -0.3633 -0.0956 -1.0232 29 1 -0.3633 -0.8384 0.5944 30 1 -0.3633 0.9339 0.4288 31 1 4.3048 1.4168 0.0011 32 1 4.4596 -1.2662 -0.0100 33 1 3.6389 -3.3122 0.2202 34 1 1.5481 -5.1224 0.7928 35 1 1.7792 -5.0724 -0.9713 36 1 3.8828 -6.3684 -1.9780 37 1 3.9529 -4.7200 2.8336 38 1 2.6274 -5.9165 2.8513 39 1 1.5360 -5.0304 5.2109 40 1 6.4118 -5.9183 3.1704 41 1 6.3460 -7.4588 4.0617 42 1 6.9948 -7.6088 1.5712 43 1 5.6712 -8.6734 2.1062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069855382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:30 Heat of formation + Delta-G solvation = 155.173918 kcal Electronic energy + Delta-G solvation = -28220.166529 eV Core-core repulsion = 24305.076011 eV Total energy + Delta-G solvation = -3915.090518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50183 -41.01872 -39.08547 -36.35694 -34.98938 -33.37257 -32.98348 -31.61919 -30.72106 -30.25053 -28.71344 -27.13160 -26.15817 -25.05146 -23.57794 -22.79454 -21.81051 -21.38750 -20.25411 -19.87316 -18.55405 -17.90149 -16.77679 -16.31367 -16.17924 -16.05043 -15.44454 -15.17229 -14.88551 -14.52140 -14.29242 -13.88505 -13.79611 -13.64859 -13.45331 -13.32208 -13.22052 -12.86831 -12.64199 -12.50014 -12.37010 -11.73590 -11.64390 -11.29959 -11.05193 -10.89343 -10.86668 -10.74485 -10.24669 -10.22793 -10.09737 -10.00077 -9.27509 -9.06467 -8.96931 -8.80572 -8.57188 -7.97063 -7.15687 -6.02255 -3.44257 1.29820 2.30991 2.44810 2.59219 2.93045 2.98948 3.27869 3.32459 3.35123 3.35423 3.65951 4.29131 4.51077 4.70656 4.92142 5.03788 5.08514 5.12434 5.19096 5.22419 5.34309 5.45705 5.48266 5.52059 5.57792 5.60838 5.68112 5.71527 5.82322 6.07355 6.18244 6.33403 6.38096 6.43235 6.50472 6.58125 6.67376 6.91170 7.05169 7.17230 7.53653 7.57609 7.61224 8.01341 8.06025 8.20334 8.26259 8.90252 9.52225 10.02610 11.07652 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.003893 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.831906 B = 7190.306172 C = 8657.561188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.259 5.259 3 N -0.284 5.284 4 C -0.005 4.005 5 C -0.190 4.190 6 C -0.030 4.030 7 C 0.589 3.411 8 O -0.546 6.546 9 N -0.700 5.700 10 C 0.212 3.788 11 C -0.292 4.292 12 C 0.058 3.942 13 N -0.318 5.318 14 N -0.358 5.358 15 C 0.123 3.877 16 C 0.226 3.774 17 N -0.598 5.598 18 C -0.261 4.261 19 H 0.075 0.925 20 C 0.006 3.994 21 N -0.907 5.907 22 Si 0.911 3.089 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.129 3.871 27 C 0.113 3.887 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.160 0.840 33 H 0.403 0.597 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.055 0.945 38 H 0.121 0.879 39 H 0.260 0.740 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 6.759 -10.017 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.047 5.047 3 N -0.117 5.117 4 C -0.180 4.180 5 C -0.219 4.219 6 C -0.159 4.159 7 C 0.373 3.627 8 O -0.424 6.424 9 N -0.350 5.350 10 C 0.089 3.911 11 C -0.304 4.304 12 C -0.129 4.129 13 N -0.138 5.138 14 N -0.139 5.139 15 C -0.009 4.009 16 C 0.099 3.901 17 N -0.321 5.321 18 C -0.389 4.389 19 H 0.093 0.907 20 C -0.193 4.193 21 N -0.552 5.552 22 Si 0.740 3.260 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.209 1.209 26 C 0.001 3.999 27 C -0.010 4.010 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.202 0.798 32 H 0.178 0.822 33 H 0.238 0.762 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.139 0.861 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.736 6.665 -10.141 12.259 hybrid contribution -0.047 -0.543 0.803 0.970 sum 1.689 6.122 -9.338 11.293 Atomic orbital electron populations 1.22290 0.72541 1.05509 1.04780 1.45596 1.07900 1.01768 1.49416 1.73189 1.04427 1.13770 1.20294 1.23537 0.93430 0.95011 1.06069 1.22266 0.95708 0.95587 1.08334 1.21514 0.91432 0.89878 1.13086 1.16874 0.85794 0.82967 0.77024 1.90783 1.16017 1.84561 1.51078 1.45913 1.10774 1.06018 1.72316 1.19366 0.93069 0.76582 1.02066 1.19374 1.06297 1.12752 0.91996 1.23678 0.93583 0.96291 0.99368 1.77177 1.23165 1.24955 0.88491 1.48504 1.24805 1.36463 1.04132 1.22657 0.88266 0.90522 0.99481 1.20115 0.99593 0.93124 0.77266 1.44235 1.04268 1.58188 1.25375 1.19178 1.07869 1.08663 1.03237 0.90694 1.24971 0.99905 0.95633 0.98795 1.69877 1.25140 1.14240 1.45907 0.86232 0.79652 0.79176 0.80913 1.20740 1.21341 1.20861 1.21267 0.88205 0.97727 0.92749 1.22550 0.92001 0.98100 0.88385 0.89781 0.87422 0.88945 0.79765 0.82221 0.76216 0.90349 0.91037 0.80719 0.92769 0.86128 0.92960 0.94549 0.89741 0.90158 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 10.61 59.85 0.64 1.60 16 2 N -0.26 -3.54 3.75 -63.88 -0.24 -3.78 16 3 N -0.28 -3.85 11.90 30.59 0.36 -3.49 16 4 C 0.00 -0.06 12.03 -17.43 -0.21 -0.27 16 5 C -0.19 -2.28 10.50 -38.98 -0.41 -2.69 16 6 C -0.03 -0.43 6.96 -82.06 -0.57 -1.00 16 7 C 0.59 9.03 7.79 -12.64 -0.10 8.93 16 8 O -0.55 -9.58 14.88 5.25 0.08 -9.50 16 9 N -0.70 -9.96 5.53 -62.65 -0.35 -10.31 16 10 C 0.21 3.25 5.96 -5.20 -0.03 3.22 16 11 C -0.29 -4.85 5.46 -105.21 -0.57 -5.42 16 12 C 0.06 0.90 11.97 -17.21 -0.21 0.70 16 13 N -0.32 -5.70 12.61 30.70 0.39 -5.31 16 14 N -0.36 -6.67 4.03 -56.94 -0.23 -6.90 16 15 C 0.12 2.35 6.71 -82.17 -0.55 1.80 16 16 C 0.23 4.96 5.16 -4.48 -0.02 4.94 16 17 N -0.60 -13.61 3.03 -172.96 -0.52 -14.14 16 18 C -0.26 -6.55 9.72 -15.06 -0.15 -6.70 16 19 H 0.08 1.82 7.86 -52.48 -0.41 1.40 16 20 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 21 N -0.91 -24.30 10.69 55.49 0.59 -23.71 16 22 Si 0.91 20.59 29.58 -169.99 -5.03 15.56 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 C 0.13 2.34 6.49 -3.59 -0.02 2.31 16 27 C 0.11 1.87 7.44 -3.88 -0.03 1.84 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.11 1.27 6.73 -51.93 -0.35 0.92 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.16 1.51 7.61 -52.49 -0.40 1.11 16 33 H 0.40 5.21 7.53 -40.82 -0.31 4.90 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.12 3.01 6.11 -51.93 -0.32 2.70 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -31.30 362.54 -7.37 -38.67 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.56 Total: 8.12 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -2.33 Total: 9.32 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: 0.01 Total: -67.63 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.08 Total: -9.50 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.30 -7.37 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069855382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.839 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds