Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28447 * 125.18972 * 2 1 4 4 C 1.30860 * 110.92775 * 179.97438 * 3 2 1 5 5 C 1.39677 * 107.86208 * 0.25754 * 4 3 2 6 6 C 1.36602 * 125.19199 * 179.97438 * 2 1 3 7 7 C 1.47159 * 126.88337 * 359.97438 * 6 2 1 8 8 O 1.21633 * 120.00275 * 4.38542 * 7 6 2 9 9 N 1.34782 * 120.00040 * 184.38669 * 7 6 2 10 10 C 1.46499 * 119.99900 * 184.47069 * 9 7 6 11 11 C 1.50696 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.40076 * 126.12555 * 259.68786 * 11 10 9 13 13 N 1.31015 * 108.25287 * 179.85536 * 12 11 10 14 14 N 1.39748 * 108.17653 * 0.60511 * 13 12 11 15 15 C 1.34643 * 126.12663 * 80.00210 * 11 10 9 16 16 C 1.51040 * 127.90871 * 359.64808 * 15 11 10 17 17 N 1.47500 * 107.00193 * 169.53085 * 16 15 11 18 18 C 1.36931 * 121.01235 * 222.90151 * 17 16 15 19 19 H 1.08008 * 120.00051 * 159.63039 * 18 17 16 20 20 C 1.38810 * 120.00042 * 339.62990 * 18 17 16 21 21 N 1.31611 * 120.00297 * 346.13107 * 20 18 17 22 22 Si 1.86807 * 120.00068 * 166.12703 * 20 18 17 23 23 H 1.48504 * 109.46933 * 60.00210 * 22 20 18 24 24 H 1.48498 * 109.47286 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47162 * 300.00500 * 22 20 18 26 26 C 1.47090 * 117.97639 * 42.92180 * 17 16 15 27 27 C 1.46549 * 127.31900 * 179.18469 * 14 13 12 28 28 H 1.08996 * 109.46858 * 95.34043 * 1 2 3 29 29 H 1.09006 * 109.46842 * 215.33742 * 1 2 3 30 30 H 1.08998 * 109.46957 * 335.33889 * 1 2 3 31 31 H 1.08001 * 126.06952 * 180.02562 * 4 3 2 32 32 H 1.08002 * 127.31806 * 179.74286 * 5 4 3 33 33 H 0.97000 * 119.99721 * 4.46604 * 9 7 6 34 34 H 1.08995 * 109.46794 * 299.99718 * 10 9 7 35 35 H 1.08997 * 109.47261 * 59.99394 * 10 9 7 36 36 H 1.07993 * 125.87285 * 0.03729 * 12 11 10 37 37 H 1.09003 * 109.94678 * 288.90430 * 16 15 11 38 38 H 1.08998 * 109.94944 * 50.15575 * 16 15 11 39 39 H 0.96999 * 120.00644 * 179.97438 * 21 20 18 40 40 H 1.09004 * 109.51348 * 56.34712 * 26 17 16 41 41 H 1.09004 * 109.51177 * 176.49719 * 26 17 16 42 42 H 1.09005 * 109.50854 * 41.60087 * 27 14 13 43 43 H 1.08997 * 109.51387 * 281.45524 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7274 0.0005 5 6 3.5612 -0.6667 -0.0050 6 6 2.2523 -1.1163 0.0005 7 6 1.7994 -2.5165 0.0017 8 8 0.6129 -2.7720 -0.0783 9 7 2.6993 -3.5158 0.0913 10 6 2.2584 -4.9095 -0.0060 11 6 3.4497 -5.8233 0.1236 12 6 4.1254 -6.4536 -0.9291 13 7 5.1049 -7.1613 -0.4227 14 7 5.0751 -7.0152 0.9668 15 6 4.0515 -6.1849 1.2725 16 6 3.6933 -5.7673 2.6791 17 7 4.4750 -6.6198 3.5944 18 6 3.9035 -7.1623 4.7142 19 1 4.3542 -8.0218 5.1882 20 6 2.7448 -6.6077 5.2402 21 7 2.3459 -5.4178 4.8437 22 14 1.7514 -7.5503 6.5108 23 1 2.5962 -7.8142 7.7033 24 1 0.5682 -6.7466 6.9098 25 1 1.2999 -8.8399 5.9289 26 6 5.8874 -6.8690 3.2679 27 6 5.9712 -7.6380 1.9450 28 1 -0.3633 -0.0956 -1.0232 29 1 -0.3633 -0.8384 0.5944 30 1 -0.3633 0.9339 0.4288 31 1 4.3048 1.4168 0.0011 32 1 4.4596 -1.2662 -0.0100 33 1 3.6389 -3.3122 0.2202 34 1 1.5481 -5.1224 0.7928 35 1 1.7792 -5.0724 -0.9713 36 1 3.8828 -6.3684 -1.9780 37 1 3.9529 -4.7200 2.8336 38 1 2.6274 -5.9165 2.8513 39 1 1.5360 -5.0304 5.2109 40 1 6.4118 -5.9183 3.1704 41 1 6.3460 -7.4588 4.0617 42 1 6.9948 -7.6088 1.5712 43 1 5.6712 -8.6734 2.1062 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069855382.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = 133.908721 kcal Electronic energy + Delta-G solvation = -28221.088657 eV Core-core repulsion = 24305.076011 eV Total energy + Delta-G solvation = -3916.012646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.47700 -42.40741 -40.31090 -37.97144 -36.26701 -34.72088 -34.18232 -33.05099 -32.02690 -31.73869 -30.08574 -28.05892 -27.80033 -26.45747 -25.14407 -23.97322 -23.26395 -22.39178 -21.60238 -21.02126 -19.97823 -19.07756 -18.55437 -17.60274 -17.32837 -17.27609 -16.70177 -16.60358 -16.25628 -15.90160 -15.53162 -15.40993 -15.13046 -14.91371 -14.76737 -14.65969 -14.40525 -14.06172 -13.90138 -13.71106 -13.31655 -13.27147 -13.09115 -12.92799 -12.73562 -12.58738 -12.35807 -12.00632 -11.90940 -11.85151 -11.61504 -11.25146 -10.78839 -10.36818 -10.04046 -10.02827 -9.95190 -9.38923 -8.98442 -7.96398 -5.38843 0.23712 0.93853 1.37081 1.46632 1.49604 1.54946 1.63147 1.66019 1.75683 2.18761 2.45131 2.48713 3.22043 3.44379 3.60364 3.63138 3.64532 3.85500 4.11893 4.19929 4.21405 4.25701 4.31054 4.37535 4.39284 4.48417 4.61306 4.67076 4.76980 4.80234 4.86078 4.90028 4.95457 5.06338 5.25912 5.35339 5.43248 5.54777 5.58397 5.73775 5.77940 6.11430 6.20000 6.44665 6.82564 7.00455 7.01859 7.11545 7.67158 8.15899 9.11445 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.003893 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.831906 B = 7190.306172 C = 8657.561188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.270 5.270 3 N -0.300 5.300 4 C -0.005 4.005 5 C -0.181 4.181 6 C -0.057 4.057 7 C 0.588 3.412 8 O -0.575 6.575 9 N -0.692 5.692 10 C 0.219 3.781 11 C -0.277 4.277 12 C 0.069 3.931 13 N -0.328 5.328 14 N -0.367 5.367 15 C 0.098 3.902 16 C 0.244 3.756 17 N -0.618 5.618 18 C -0.265 4.265 19 H 0.082 0.918 20 C -0.045 4.045 21 N -0.934 5.934 22 Si 0.967 3.033 23 H -0.272 1.272 24 H -0.297 1.297 25 H -0.282 1.282 26 C 0.128 3.872 27 C 0.117 3.883 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.220 0.780 32 H 0.184 0.816 33 H 0.410 0.590 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.033 0.967 38 H 0.084 0.916 39 H 0.251 0.749 40 H 0.042 0.958 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 6.580 -11.377 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.058 5.058 3 N -0.133 5.133 4 C -0.180 4.180 5 C -0.210 4.210 6 C -0.186 4.186 7 C 0.374 3.626 8 O -0.455 6.455 9 N -0.342 5.342 10 C 0.095 3.905 11 C -0.289 4.289 12 C -0.117 4.117 13 N -0.147 5.147 14 N -0.149 5.149 15 C -0.033 4.033 16 C 0.117 3.883 17 N -0.341 5.341 18 C -0.394 4.394 19 H 0.100 0.900 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.198 1.198 24 H -0.223 1.223 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.006 4.006 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.130 0.870 31 H 0.236 0.764 32 H 0.201 0.799 33 H 0.247 0.753 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.446 6.467 -11.504 13.639 hybrid contribution -0.493 -0.471 1.176 1.359 sum 2.952 5.996 -10.328 12.302 Atomic orbital electron populations 1.22393 0.71716 1.05871 1.05404 1.45845 1.08650 1.01644 1.49660 1.73183 1.05378 1.13963 1.20784 1.24177 0.93665 0.95494 1.04678 1.22647 0.95626 0.96119 1.06620 1.21515 0.92609 0.89343 1.15120 1.17084 0.85424 0.83709 0.76384 1.90762 1.17180 1.85086 1.52498 1.45761 1.11060 1.05441 1.71953 1.19241 0.92199 0.77019 1.01994 1.19485 1.05772 1.12036 0.91644 1.24265 0.92136 0.94518 1.00793 1.77175 1.24086 1.25568 0.87908 1.48685 1.24884 1.36536 1.04761 1.22273 0.89943 0.92501 0.98598 1.19530 0.97526 0.92089 0.79173 1.44472 1.06405 1.58186 1.25054 1.19535 1.07832 1.08556 1.03452 0.90007 1.25638 1.01116 0.96399 1.00898 1.70049 1.25128 1.15575 1.47229 0.85347 0.78096 0.77757 0.79296 1.19777 1.22348 1.20775 1.21438 0.85729 0.98475 0.94247 1.22531 0.93452 0.97346 0.87263 0.88659 0.88988 0.87001 0.76396 0.79878 0.75334 0.93258 0.89035 0.76738 0.94967 0.89773 0.93937 0.94007 0.88275 0.86952 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.87 10.61 127.77 1.36 3.23 16 2 N -0.27 -7.29 3.75 -356.02 -1.33 -8.62 16 3 N -0.30 -7.78 11.90 -57.14 -0.68 -8.46 16 4 C -0.01 -0.11 12.03 85.19 1.02 0.92 16 5 C -0.18 -4.04 10.50 22.66 0.24 -3.80 16 6 C -0.06 -1.60 6.96 40.78 0.28 -1.31 16 7 C 0.59 18.21 7.79 86.58 0.67 18.88 16 8 O -0.57 -20.73 14.88 -4.14 -0.06 -20.79 16 9 N -0.69 -19.53 5.53 -470.38 -2.60 -22.13 16 10 C 0.22 6.66 5.96 85.63 0.51 7.17 16 11 C -0.28 -8.89 5.46 -20.24 -0.11 -9.00 16 12 C 0.07 1.97 11.97 85.26 1.02 2.99 16 13 N -0.33 -10.84 12.61 -56.80 -0.72 -11.56 16 14 N -0.37 -13.06 4.03 -334.05 -1.35 -14.41 16 15 C 0.10 3.74 6.71 41.31 0.28 4.02 16 16 C 0.24 11.05 5.16 85.55 0.44 11.50 16 17 N -0.62 -28.32 3.03 -701.12 -2.12 -30.45 16 18 C -0.26 -13.37 9.72 84.03 0.82 -12.56 16 19 H 0.08 3.92 7.86 -2.91 -0.02 3.90 16 20 C -0.05 -2.37 5.08 84.86 0.43 -1.94 16 21 N -0.93 -51.97 10.69 21.65 0.23 -51.74 16 22 Si 0.97 42.99 29.58 68.60 2.03 45.02 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.13 4.49 6.49 86.35 0.56 5.05 16 27 C 0.12 3.62 7.44 86.46 0.64 4.27 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 2.29 6.73 -2.38 -0.02 2.28 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.22 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.18 3.02 7.61 -2.91 -0.02 3.00 16 33 H 0.41 10.28 7.53 -92.71 -0.70 9.58 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.22 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 4.44 6.11 -2.39 -0.01 4.42 16 39 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.10 3.13 7.93 -2.38 -0.02 3.11 16 42 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 43 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -68.67 362.54 1.92 -66.75 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.36 Total: 26.98 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 8.17 Total: 29.41 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -8.57 Total: -147.36 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.06 Total: -20.79 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -68.67 1.92 -66.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069855382.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.656 kcal (2) G-P(sol) polarization free energy of solvation -68.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds