Wall clock time and date at job start Tue Mar 31 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35848 * 126.13692 * 2 1 4 4 N 1.30169 * 109.00282 * 179.82162 * 3 2 1 5 5 C 1.35764 * 108.86789 * 0.44655 * 4 3 2 6 6 C 1.47320 * 126.23762 * 179.72152 * 5 4 3 7 7 O 1.21622 * 120.00219 * 180.02562 * 6 5 4 8 8 N 1.34783 * 119.99810 * 0.02562 * 6 5 4 9 9 C 1.46501 * 119.99666 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.46894 * 180.02562 * 9 8 6 11 11 C 1.40067 * 126.12412 * 259.68963 * 10 9 8 12 12 N 1.31010 * 108.25405 * 179.97438 * 11 10 9 13 13 N 1.39743 * 108.17682 * 0.52659 * 12 11 10 14 14 C 1.34638 * 126.12410 * 79.99879 * 10 9 8 15 15 C 1.51043 * 127.91287 * 359.44215 * 14 10 9 16 16 N 1.47498 * 107.00136 * 169.56998 * 15 14 10 17 17 C 1.36937 * 121.01476 * 222.98064 * 16 15 14 18 18 H 1.07994 * 120.00155 * 155.90653 * 17 16 15 19 19 C 1.38810 * 119.99407 * 335.89892 * 17 16 15 20 20 N 1.31615 * 120.00312 * 344.42823 * 19 17 16 21 21 Si 1.86798 * 119.99649 * 164.42762 * 19 17 16 22 22 H 1.48503 * 109.47590 * 94.43433 * 21 19 17 23 23 H 1.48501 * 109.47169 * 214.43502 * 21 19 17 24 24 H 1.48499 * 109.47170 * 334.43205 * 21 19 17 25 25 C 1.47091 * 117.97413 * 42.97270 * 16 15 14 26 26 C 1.46552 * 127.32565 * 179.23470 * 13 12 11 27 27 C 1.35377 * 126.13181 * 180.31771 * 2 1 3 28 28 H 1.08998 * 109.47008 * 269.68926 * 1 2 3 29 29 H 1.09004 * 109.47124 * 29.68535 * 1 2 3 30 30 H 1.08998 * 109.47581 * 149.68723 * 1 2 3 31 31 H 1.07998 * 125.49546 * 0.02562 * 3 2 1 32 32 H 0.96990 * 119.99955 * 0.02562 * 8 6 5 33 33 H 1.09006 * 109.46870 * 299.99909 * 9 8 6 34 34 H 1.08998 * 109.47030 * 59.99655 * 9 8 6 35 35 H 1.08001 * 125.87249 * 0.08613 * 11 10 9 36 36 H 1.08992 * 109.94519 * 288.94465 * 15 14 10 37 37 H 1.09001 * 109.94358 * 50.19629 * 15 14 10 38 38 H 0.97010 * 119.99963 * 180.02562 * 20 19 17 39 39 H 1.08997 * 109.50713 * 176.52082 * 25 16 15 40 40 H 1.08998 * 109.50645 * 56.37456 * 25 16 15 41 41 H 1.09003 * 109.51108 * 281.39626 * 26 13 12 42 42 H 1.09001 * 109.51300 * 41.53587 * 26 13 12 43 43 H 1.07999 * 126.56978 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 0.0038 5 6 3.5511 -0.6434 -0.0036 6 6 4.7652 -1.4778 -0.0082 7 8 4.6698 -2.6903 -0.0153 8 7 5.9817 -0.8976 -0.0046 9 6 7.1890 -1.7274 -0.0097 10 6 8.4078 -0.8411 -0.0036 11 6 9.1950 -0.5118 -1.1143 12 7 10.1607 0.2775 -0.7134 13 7 10.0261 0.4657 0.6648 14 6 8.9384 -0.2286 1.0717 15 6 8.4470 -0.2691 2.4994 16 7 9.4972 0.3436 3.3344 17 6 9.8618 -0.2136 4.5310 18 1 10.8425 -0.0207 4.9400 19 6 8.9707 -1.0263 5.2182 20 7 7.6942 -1.0221 4.8974 21 14 9.5833 -2.1260 6.5984 22 1 9.4174 -1.4277 7.8985 23 1 8.8000 -3.3876 6.6107 24 1 11.0193 -2.4370 6.3832 25 6 10.1410 1.5713 2.8427 26 6 10.8905 1.2605 1.5417 27 6 2.2632 -1.0934 -0.0061 28 1 -0.3633 -0.0056 1.0276 29 1 -0.3633 0.8928 -0.5090 30 1 -0.3634 -0.8871 -0.5187 31 1 1.9258 2.1221 0.0004 32 1 6.0578 0.0693 0.0015 33 1 7.1974 -2.3623 0.8764 34 1 7.1974 -2.3512 -0.9036 35 1 9.0327 -0.8491 -2.1274 36 1 7.5212 0.2988 2.5902 37 1 8.2827 -1.3019 2.8068 38 1 7.0715 -1.5898 5.3780 39 1 10.8455 1.9371 3.5896 40 1 9.3817 2.3303 2.6548 41 1 11.7964 0.6978 1.7671 42 1 11.1551 2.1934 1.0439 43 1 1.9421 -2.1245 -0.0122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069857323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:01 Heat of formation + Delta-G solvation = 136.082720 kcal Electronic energy + Delta-G solvation = -27913.367931 eV Core-core repulsion = 23997.449557 eV Total energy + Delta-G solvation = -3915.918374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.18919 -40.87589 -38.77124 -36.22305 -34.60737 -34.23637 -32.87460 -31.18009 -30.13980 -29.88264 -28.79365 -27.40748 -25.97271 -24.85437 -23.48417 -22.62748 -21.65689 -21.23445 -20.04190 -19.79178 -18.40030 -17.82519 -16.64673 -16.26973 -16.00981 -15.81364 -15.49307 -15.09250 -14.73596 -14.46443 -14.27769 -13.85923 -13.79796 -13.59621 -13.40405 -13.18989 -13.15676 -13.05169 -12.99002 -12.39103 -12.34226 -11.61948 -11.51067 -11.22561 -10.91303 -10.82061 -10.65879 -10.32148 -10.13952 -10.10064 -10.02587 -9.87354 -9.76690 -8.83820 -8.75744 -8.47512 -8.43248 -7.82539 -7.00802 -5.94570 -3.37348 1.64015 2.45660 2.47549 2.54558 3.07007 3.13007 3.32609 3.40856 3.42569 3.82111 3.95790 4.36378 4.37115 4.47585 4.66280 4.73044 4.99010 5.04915 5.14010 5.21054 5.28476 5.45345 5.47716 5.63904 5.67201 5.69687 5.81266 5.91663 5.96287 6.23411 6.29652 6.40317 6.48073 6.50295 6.65609 6.87500 6.92387 7.02255 7.19074 7.25360 7.63942 7.69137 7.70480 8.09061 8.16322 8.33217 8.65911 8.98560 9.61204 10.14359 11.16089 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.003692 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.310560 B = 7582.454275 C = 9048.414470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.464 5.464 3 C 0.181 3.819 4 N -0.459 5.459 5 C -0.054 4.054 6 C 0.601 3.399 7 O -0.554 6.554 8 N -0.703 5.703 9 C 0.210 3.790 10 C -0.287 4.287 11 C 0.057 3.943 12 N -0.319 5.319 13 N -0.358 5.358 14 C 0.121 3.879 15 C 0.231 3.769 16 N -0.597 5.597 17 C -0.264 4.264 18 H 0.073 0.927 19 C 0.008 3.992 20 N -0.901 5.901 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.278 1.278 25 C 0.129 3.871 26 C 0.114 3.886 27 C 0.027 3.973 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.210 0.790 32 H 0.408 0.592 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.175 0.825 36 H 0.058 0.942 37 H 0.109 0.891 38 H 0.259 0.741 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.475 4.277 -10.764 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.146 5.146 3 C -0.102 4.102 4 N -0.178 5.178 5 C -0.183 4.183 6 C 0.386 3.614 7 O -0.432 6.432 8 N -0.352 5.352 9 C 0.086 3.914 10 C -0.299 4.299 11 C -0.130 4.130 12 N -0.139 5.139 13 N -0.140 5.140 14 C -0.011 4.011 15 C 0.104 3.896 16 N -0.319 5.319 17 C -0.392 4.392 18 H 0.091 0.909 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.000 4.000 26 C -0.009 4.009 27 C -0.111 4.111 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.227 0.773 32 H 0.243 0.757 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.192 0.808 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.913 4.600 -10.913 16.104 hybrid contribution -1.165 -0.926 0.928 1.754 sum -12.078 3.674 -9.986 16.096 Atomic orbital electron populations 1.22112 0.76072 1.04903 1.04005 1.45332 1.08090 1.06999 1.54227 1.25183 0.85243 0.93510 1.06298 1.70635 1.19388 1.10582 1.17204 1.20686 0.93358 0.90435 1.13806 1.16865 0.82035 0.86274 0.76195 1.90770 1.86985 1.13402 1.52091 1.45986 1.04812 1.11202 1.73219 1.19333 0.79222 0.90757 1.02072 1.19418 1.04413 1.13299 0.92769 1.23658 0.93371 0.96838 0.99097 1.77148 1.24023 1.22151 0.90606 1.48473 1.22109 1.38370 1.05017 1.22561 0.87722 0.91601 0.99181 1.19920 0.90103 1.01346 0.78197 1.44208 1.43142 1.24116 1.20458 1.19147 0.97326 1.26351 0.96414 0.90927 1.25036 0.94766 1.01150 0.98174 1.69960 1.01019 1.40455 1.43036 0.86212 0.78256 0.80276 0.81609 1.21283 1.21280 1.20332 1.21286 0.96399 0.90097 0.92185 1.22544 0.93449 0.94125 0.90813 1.22582 0.90285 0.93096 1.05142 0.90140 0.89167 0.89399 0.77347 0.75725 0.90790 0.91284 0.80772 0.92450 0.87349 0.93103 0.89805 0.94561 0.90650 0.90271 0.79570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.28 11.15 59.85 0.67 0.95 16 2 N -0.46 -4.22 3.13 -125.78 -0.39 -4.61 16 3 C 0.18 1.89 12.55 -89.91 -1.13 0.76 16 4 N -0.46 -6.75 11.01 -11.03 -0.12 -6.87 16 5 C -0.05 -0.83 6.98 -83.09 -0.58 -1.41 16 6 C 0.60 10.77 7.81 -12.56 -0.10 10.68 16 7 O -0.55 -11.13 16.88 5.26 0.09 -11.04 16 8 N -0.70 -12.23 5.55 -62.59 -0.35 -12.57 16 9 C 0.21 3.71 5.95 -5.19 -0.03 3.67 16 10 C -0.29 -5.35 5.46 -105.21 -0.57 -5.93 16 11 C 0.06 0.99 11.97 -17.22 -0.21 0.79 16 12 N -0.32 -6.20 12.61 30.70 0.39 -5.82 16 13 N -0.36 -7.23 4.03 -56.89 -0.23 -7.46 16 14 C 0.12 2.54 6.71 -82.17 -0.55 1.99 16 15 C 0.23 5.47 5.11 -4.48 -0.02 5.45 16 16 N -0.60 -14.40 3.01 -172.93 -0.52 -14.92 16 17 C -0.26 -6.92 9.66 -15.06 -0.15 -7.06 16 18 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 19 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 20 N -0.90 -25.27 11.07 55.49 0.61 -24.66 16 21 Si 0.91 21.22 29.58 -169.99 -5.03 16.19 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.13 2.51 6.50 -3.55 -0.02 2.49 16 26 C 0.11 2.04 7.45 -3.84 -0.03 2.01 16 27 C 0.03 0.33 11.26 -16.64 -0.19 0.14 16 28 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.41 7.06 8.18 -40.82 -0.33 6.72 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.18 2.40 8.06 -52.49 -0.42 1.97 16 36 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.11 2.87 6.46 -51.93 -0.34 2.53 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.08 1.50 7.94 -51.93 -0.41 1.08 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -34.58 367.97 -8.70 -43.28 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.70 Total: 8.27 kcal Atomic # 6 Polarization: 17.65 SS G_CDS: -3.00 Total: 14.66 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -0.61 Total: -76.91 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.58 -8.70 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069857323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.364 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds