Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35041 * 124.88252 * 2 1 4 4 C 1.35370 * 107.22476 * 179.72550 * 3 2 1 5 5 C 1.41497 * 105.50264 * 0.37779 * 4 3 2 6 6 C 1.47719 * 126.51522 * 179.88165 * 5 4 3 7 7 O 1.21566 * 119.99657 * 359.70903 * 6 5 4 8 8 N 1.34778 * 119.99672 * 179.44073 * 6 5 4 9 9 C 1.46503 * 119.99639 * 180.27702 * 8 6 5 10 10 C 1.50695 * 109.46976 * 179.97438 * 9 8 6 11 11 C 1.40077 * 126.12114 * 259.68632 * 10 9 8 12 12 N 1.31016 * 108.25391 * 179.97438 * 11 10 9 13 13 N 1.39744 * 108.17696 * 0.52666 * 12 11 10 14 14 C 1.34640 * 126.13158 * 79.99331 * 10 9 8 15 15 C 1.51039 * 127.90431 * 359.45123 * 14 10 9 16 16 N 1.47501 * 106.99733 * 169.56737 * 15 14 10 17 17 C 1.36941 * 121.00994 * 222.97172 * 16 15 14 18 18 H 1.08005 * 119.99949 * 155.89943 * 17 16 15 19 19 C 1.38813 * 120.00074 * 335.90338 * 17 16 15 20 20 N 1.31616 * 119.99784 * 344.42262 * 19 17 16 21 21 Si 1.86797 * 120.00013 * 164.42402 * 19 17 16 22 22 H 1.48504 * 109.47027 * 94.43263 * 21 19 17 23 23 H 1.48498 * 109.47259 * 214.43236 * 21 19 17 24 24 H 1.48499 * 109.47148 * 334.43179 * 21 19 17 25 25 C 1.47081 * 117.97637 * 42.96900 * 16 15 14 26 26 C 1.46553 * 127.32803 * 179.24034 * 13 12 11 27 27 N 1.28472 * 124.88835 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47226 * 269.99948 * 1 2 3 29 29 H 1.08997 * 109.46795 * 30.00393 * 1 2 3 30 30 H 1.08994 * 109.46899 * 150.00130 * 1 2 3 31 31 H 1.07993 * 126.38712 * 359.97438 * 3 2 1 32 32 H 1.08000 * 127.24605 * 180.27218 * 4 3 2 33 33 H 0.96995 * 120.00212 * 0.26629 * 8 6 5 34 34 H 1.09007 * 109.46869 * 299.99411 * 9 8 6 35 35 H 1.08996 * 109.47503 * 59.99583 * 9 8 6 36 36 H 1.07993 * 125.87412 * 0.08984 * 11 10 9 37 37 H 1.09002 * 109.94599 * 288.93034 * 15 14 10 38 38 H 1.08996 * 109.95277 * 50.18886 * 15 14 10 39 39 H 0.97004 * 119.99794 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.51248 * 176.52321 * 25 16 15 41 41 H 1.09001 * 109.51308 * 56.37752 * 25 16 15 42 42 H 1.09000 * 109.50489 * 281.39541 * 26 13 12 43 43 H 1.09000 * 109.51005 * 41.53159 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5272 0.6972 0.0062 5 6 3.4740 -0.7168 0.0009 6 6 4.6274 -1.6398 0.0020 7 8 5.7597 -1.1975 0.0026 8 7 4.4241 -2.9721 0.0078 9 6 5.5680 -3.8875 0.0150 10 6 5.0724 -5.3106 0.0211 11 6 4.9897 -6.1514 1.1384 12 7 4.5120 -7.3071 0.7478 13 7 4.2874 -7.2429 -0.6299 14 6 4.6353 -6.0036 -1.0473 15 6 4.5263 -5.5320 -2.4780 16 7 4.2404 -6.7206 -3.3033 17 6 4.8745 -6.9169 -4.5010 18 1 4.9722 -7.9145 -4.9032 19 6 5.3917 -5.8338 -5.1983 20 7 5.0193 -4.6109 -4.8849 21 14 6.6160 -6.1118 -6.5814 22 1 5.8943 -6.1647 -7.8782 23 1 7.5968 -4.9970 -6.6058 24 1 7.3303 -7.3947 -6.3597 25 6 3.2537 -7.6886 -2.8005 26 6 3.7732 -8.3066 -1.4971 27 7 2.1998 -1.0538 0.0005 28 1 -0.3633 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.8905 2.1305 -0.0004 32 1 4.4108 1.3181 0.0121 33 1 3.5206 -3.3249 0.0073 34 1 6.1749 -3.7175 -0.8744 35 1 6.1705 -3.7091 0.9056 36 1 5.2695 -5.8910 2.1485 37 1 3.7142 -4.8108 -2.5709 38 1 5.4659 -5.0779 -2.7926 39 1 5.3805 -3.8540 -5.3724 40 1 3.1044 -8.4743 -3.5411 41 1 2.3080 -7.1802 -2.6125 42 1 4.5732 -9.0124 -1.7206 43 1 2.9589 -8.8262 -0.9921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069883289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = 156.161164 kcal Electronic energy + Delta-G solvation = -28026.989302 eV Core-core repulsion = 24111.941595 eV Total energy + Delta-G solvation = -3915.047708 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.60920 -40.92778 -38.89279 -36.26546 -34.67642 -33.52864 -32.92502 -31.30396 -30.69441 -30.17165 -28.93282 -27.51109 -25.99049 -24.85455 -23.51048 -22.54220 -21.68585 -21.47984 -20.09676 -19.73377 -18.42173 -17.77947 -16.68281 -16.52965 -16.32068 -15.95183 -15.50465 -15.08198 -14.77603 -14.47637 -14.08080 -13.85974 -13.72520 -13.60634 -13.33492 -13.16861 -13.02771 -12.99377 -12.73003 -12.43931 -12.39220 -11.65890 -11.56013 -11.26472 -10.95349 -10.89537 -10.84902 -10.69095 -10.16894 -10.15381 -10.05714 -9.88088 -9.28714 -9.08126 -8.87065 -8.61409 -8.50188 -7.87862 -7.04461 -5.97679 -3.40596 1.68592 2.15962 2.38900 2.48467 3.00402 3.07202 3.30981 3.39495 3.41056 3.69596 3.84732 4.29641 4.34666 4.70432 4.80439 4.90104 5.00401 5.09763 5.10365 5.24969 5.31694 5.42670 5.57603 5.60381 5.64931 5.68038 5.75453 5.78693 5.91601 6.19416 6.25598 6.38246 6.44063 6.45629 6.60361 6.68521 6.81026 6.97061 7.14080 7.20551 7.60957 7.65096 7.74950 8.03359 8.13001 8.28481 8.55307 8.95402 9.58028 10.10842 11.13112 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.003819 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.953096 B = 7329.619789 C = 8499.732662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.288 5.288 3 C -0.024 4.024 4 C -0.179 4.179 5 C -0.010 4.010 6 C 0.602 3.398 7 O -0.540 6.540 8 N -0.704 5.704 9 C 0.209 3.791 10 C -0.288 4.288 11 C 0.057 3.943 12 N -0.319 5.319 13 N -0.358 5.358 14 C 0.121 3.879 15 C 0.231 3.769 16 N -0.596 5.596 17 C -0.265 4.265 18 H 0.073 0.927 19 C 0.009 3.991 20 N -0.902 5.902 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.286 1.286 24 H -0.278 1.278 25 C 0.129 3.871 26 C 0.114 3.886 27 N -0.260 5.260 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.180 0.820 32 H 0.162 0.838 33 H 0.405 0.595 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.259 0.741 40 H 0.084 0.916 41 H 0.036 0.964 42 H 0.076 0.924 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 7.869 10.617 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.076 5.076 3 C -0.166 4.166 4 C -0.207 4.207 5 C -0.170 4.170 6 C 0.386 3.614 7 O -0.416 6.416 8 N -0.355 5.355 9 C 0.086 3.914 10 C -0.300 4.300 11 C -0.129 4.129 12 N -0.139 5.139 13 N -0.139 5.139 14 C -0.011 4.011 15 C 0.104 3.896 16 N -0.319 5.319 17 C -0.394 4.394 18 H 0.091 0.909 19 C -0.191 4.191 20 N -0.545 5.545 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.212 1.212 24 H -0.203 1.203 25 C 0.001 3.999 26 C -0.010 4.010 27 N -0.096 5.096 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.198 0.802 32 H 0.179 0.821 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.193 0.807 37 H 0.075 0.925 38 H 0.127 0.873 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.719 6.061 10.780 15.729 hybrid contribution 0.763 1.240 -0.911 1.718 sum -8.956 7.302 9.869 15.196 Atomic orbital electron populations 1.22149 0.73392 1.05517 1.04243 1.45396 1.07741 1.03184 1.51328 1.22827 0.91064 0.93648 1.09108 1.21788 0.97250 0.93656 1.08048 1.22057 0.90759 0.94280 1.09940 1.16859 0.86426 0.81584 0.76549 1.90773 1.22512 1.77239 1.51029 1.46060 1.11061 1.04949 1.73424 1.19359 0.86906 0.82859 1.02282 1.19418 1.19689 0.98071 0.92820 1.23672 0.99151 0.91042 0.99083 1.77158 1.23548 1.22416 0.90772 1.48484 1.49671 1.10767 1.05027 1.22570 0.93958 0.85382 0.99156 1.19925 1.02810 0.88612 0.78256 1.44205 1.44590 1.22586 1.20521 1.19153 1.31178 0.92811 0.96217 0.90905 1.25037 1.00473 0.95400 0.98155 1.69950 1.43884 0.97785 1.42892 0.86208 0.80978 0.77559 0.81592 1.21261 1.21230 1.20310 1.21281 0.92077 0.94478 0.92101 1.22552 0.98954 0.88434 0.91023 1.73555 1.03122 1.13964 1.18961 0.89865 0.88725 0.88444 0.80247 0.82063 0.75986 0.90611 0.91105 0.80731 0.92532 0.87285 0.93046 0.89779 0.94635 0.90602 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.31 59.85 0.68 1.19 16 2 N -0.29 -3.13 3.70 -68.13 -0.25 -3.38 16 3 C -0.02 -0.24 11.46 -17.16 -0.20 -0.44 16 4 C -0.18 -2.34 10.81 -39.36 -0.43 -2.77 16 5 C -0.01 -0.15 7.13 -82.77 -0.59 -0.74 16 6 C 0.60 10.71 7.83 -12.39 -0.10 10.61 16 7 O -0.54 -10.93 16.93 5.31 0.09 -10.84 16 8 N -0.70 -11.86 5.55 -62.47 -0.35 -12.20 16 9 C 0.21 3.60 5.95 -5.19 -0.03 3.57 16 10 C -0.29 -5.23 5.46 -105.21 -0.57 -5.81 16 11 C 0.06 0.97 11.97 -17.21 -0.21 0.77 16 12 N -0.32 -6.07 12.61 30.70 0.39 -5.68 16 13 N -0.36 -7.08 4.03 -56.90 -0.23 -7.31 16 14 C 0.12 2.48 6.71 -82.17 -0.55 1.93 16 15 C 0.23 5.36 5.11 -4.48 -0.02 5.34 16 16 N -0.60 -14.18 3.01 -172.92 -0.52 -14.70 16 17 C -0.27 -6.88 9.66 -15.06 -0.15 -7.02 16 18 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 19 C 0.01 0.23 5.00 -17.43 -0.09 0.15 16 20 N -0.90 -25.04 11.07 55.49 0.61 -24.43 16 21 Si 0.91 21.07 29.58 -169.99 -5.03 16.04 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 C 0.13 2.47 6.50 -3.56 -0.02 2.44 16 26 C 0.11 1.99 7.45 -3.85 -0.03 1.96 16 27 N -0.26 -3.76 11.67 33.42 0.39 -3.37 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.29 8.13 -51.93 -0.42 -0.14 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.16 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.41 6.63 8.19 -40.82 -0.33 6.30 16 34 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.18 2.33 8.06 -52.49 -0.42 1.90 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.11 2.84 6.46 -51.93 -0.34 2.51 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -33.81 368.02 -7.36 -41.16 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.70 Total: 7.97 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: -2.30 Total: 11.18 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: 0.04 Total: -71.07 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.81 -7.36 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069883289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.324 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds