Wall clock time and date at job start Tue Mar 31 2020 05:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33317 * 126.10372 * 2 1 4 4 C 1.30859 * 109.68266 * 180.02562 * 3 2 1 5 5 N 1.34502 * 109.16508 * 0.02562 * 4 3 2 6 6 H 0.96995 * 126.47565 * 179.97438 * 5 4 3 7 7 C 1.36657 * 126.10726 * 180.27400 * 2 1 3 8 8 C 1.46769 * 126.84454 * 359.97438 * 7 2 1 9 9 O 1.21680 * 120.00062 * 0.18607 * 8 7 2 10 10 N 1.34772 * 119.99801 * 180.18641 * 8 7 2 11 11 C 1.46506 * 119.99743 * 179.97438 * 10 8 7 12 12 C 1.50705 * 109.46957 * 180.02562 * 11 10 8 13 13 C 1.40070 * 126.12727 * 259.69181 * 12 11 10 14 14 N 1.31014 * 108.25598 * 179.97438 * 13 12 11 15 15 N 1.39748 * 108.17465 * 0.52609 * 14 13 12 16 16 C 1.34644 * 126.12284 * 80.00080 * 12 11 10 17 17 C 1.51038 * 127.90927 * 359.44750 * 16 12 11 18 18 N 1.47501 * 106.99610 * 169.56426 * 17 16 12 19 19 C 1.36938 * 121.01245 * 222.96902 * 18 17 16 20 20 H 1.08003 * 119.99705 * 155.89464 * 19 18 17 21 21 C 1.38811 * 119.99979 * 335.90077 * 19 18 17 22 22 N 1.31608 * 120.00241 * 344.44682 * 21 19 18 23 23 Si 1.86801 * 119.99791 * 164.45374 * 21 19 18 24 24 H 1.48497 * 109.47515 * 59.99767 * 23 21 19 25 25 H 1.48500 * 109.46875 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47297 * 299.99664 * 23 21 19 27 27 C 1.47080 * 117.97758 * 42.97641 * 18 17 16 28 28 C 1.46552 * 127.32472 * 179.23683 * 15 14 13 29 29 H 1.09004 * 109.47537 * 90.02092 * 1 2 3 30 30 H 1.09002 * 109.47289 * 210.02438 * 1 2 3 31 31 H 1.09000 * 109.47130 * 330.02219 * 1 2 3 32 32 H 1.08001 * 125.42246 * 179.97438 * 4 3 2 33 33 H 0.97002 * 120.00474 * 0.02562 * 10 8 7 34 34 H 1.09000 * 109.47527 * 299.99810 * 11 10 8 35 35 H 1.09001 * 109.47060 * 60.00395 * 11 10 8 36 36 H 1.07998 * 125.87008 * 0.09023 * 13 12 11 37 37 H 1.08996 * 109.94766 * 288.93604 * 17 16 12 38 38 H 1.09001 * 109.95181 * 50.19656 * 17 16 12 39 39 H 0.96997 * 120.00706 * 180.02562 * 22 21 19 40 40 H 1.08999 * 109.51910 * 176.51552 * 27 18 17 41 41 H 1.09005 * 109.51507 * 56.36727 * 27 18 17 42 42 H 1.09005 * 109.50681 * 281.40408 * 28 15 14 43 43 H 1.08999 * 109.50530 * 41.53352 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 -0.0006 5 7 3.6122 -0.6363 -0.0015 6 1 4.4188 -1.1749 -0.0024 7 6 2.3123 -1.1041 -0.0053 8 6 1.8820 -2.5072 -0.0115 9 8 0.6962 -2.7800 -0.0157 10 7 2.8004 -3.4937 -0.0125 11 6 2.3708 -4.8943 -0.0181 12 6 3.5820 -5.7911 -0.0174 13 6 4.1284 -6.4418 -1.1310 14 7 5.1725 -7.1268 -0.7347 15 7 5.3164 -6.9439 0.6433 16 6 4.3292 -6.1151 1.0548 17 6 4.1480 -5.6606 2.4837 18 7 5.0504 -6.4799 3.3144 19 6 4.6323 -6.9965 4.5118 20 1 5.1118 -7.8749 4.9178 21 6 3.5923 -6.3911 5.2036 22 7 3.2122 -5.1718 4.8857 23 14 2.7323 -7.3069 6.5861 24 1 3.7179 -7.6452 7.6440 25 1 1.6657 -6.4479 7.1603 26 1 2.1299 -8.5553 6.0533 27 6 6.4129 -6.7251 2.8178 28 6 6.3369 -7.5313 1.5158 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 4.3970 1.3745 -0.0011 33 1 3.7457 -3.2763 -0.0087 34 1 1.7709 -5.0940 0.8698 35 1 1.7753 -5.0881 -0.9102 36 1 3.7544 -6.3866 -2.1427 37 1 4.4124 -4.6071 2.5752 38 1 3.1146 -5.8141 2.7946 39 1 2.4857 -4.7486 5.3693 40 1 6.9759 -7.2885 3.5619 41 1 6.9087 -5.7728 2.6294 42 1 6.0727 -8.5647 1.7405 43 1 7.3044 -7.5031 1.0145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069884504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:24 Heat of formation + Delta-G solvation = 124.741395 kcal Electronic energy + Delta-G solvation = -28212.641983 eV Core-core repulsion = 24296.231811 eV Total energy + Delta-G solvation = -3916.410171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24874 -41.08273 -39.01375 -36.39473 -35.01170 -33.40030 -32.93807 -31.52559 -30.99519 -30.30404 -28.98303 -27.25491 -26.08574 -24.95000 -23.61662 -22.84591 -21.86184 -21.10691 -20.31137 -19.72911 -18.91042 -18.33037 -16.79629 -16.45029 -15.99613 -15.73032 -15.65298 -15.26681 -14.78559 -14.46894 -14.40724 -13.99566 -13.81225 -13.63566 -13.39731 -13.27065 -12.93614 -12.74022 -12.65117 -12.55147 -12.06681 -11.77927 -11.70508 -11.38412 -11.05761 -10.92537 -10.80671 -10.46545 -10.28108 -10.27490 -10.14372 -10.07820 -9.83715 -8.99904 -8.95607 -8.64360 -8.47346 -8.04019 -7.15972 -6.07468 -3.50719 1.29993 2.31519 2.76207 2.81160 2.87068 2.91858 3.25912 3.33777 3.34112 3.40856 3.62626 4.26489 4.38602 4.80471 4.85747 4.98698 5.03559 5.13438 5.19294 5.28917 5.43124 5.46680 5.52886 5.61848 5.68271 5.76764 5.83853 5.95249 6.03649 6.12234 6.14300 6.27805 6.32520 6.43693 6.53614 6.58365 6.80790 6.98340 7.05235 7.09872 7.48518 7.53087 7.56648 7.86168 8.02403 8.13886 8.27577 8.85453 9.48005 9.99906 11.03471 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010350 B = 0.003940 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.617024 B = 7104.900883 C = 8540.914331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.092 3.908 3 N -0.501 5.501 4 C 0.215 3.785 5 N -0.554 5.554 6 H 0.423 0.577 7 C -0.086 4.086 8 C 0.593 3.407 9 O -0.526 6.526 10 N -0.717 5.717 11 C 0.211 3.789 12 C -0.291 4.291 13 C 0.057 3.943 14 N -0.317 5.317 15 N -0.357 5.357 16 C 0.120 3.880 17 C 0.231 3.769 18 N -0.596 5.596 19 C -0.268 4.268 20 H 0.074 0.926 21 C 0.010 3.990 22 N -0.903 5.903 23 Si 0.909 3.091 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.281 1.281 27 C 0.129 3.871 28 C 0.113 3.887 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.214 0.786 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.176 0.824 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.261 0.739 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 6.263 -10.542 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 N -0.222 5.222 4 C -0.069 4.069 5 N -0.159 5.159 6 H 0.261 0.739 7 C -0.202 4.202 8 C 0.379 3.621 9 O -0.403 6.403 10 N -0.367 5.367 11 C 0.088 3.912 12 C -0.303 4.303 13 C -0.130 4.130 14 N -0.137 5.137 15 N -0.138 5.138 16 C -0.012 4.012 17 C 0.104 3.896 18 N -0.318 5.318 19 C -0.396 4.396 20 H 0.091 0.909 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.738 3.262 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.208 1.208 27 C 0.001 3.999 28 C -0.011 4.011 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.225 0.775 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.095 0.905 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.358 6.046 -10.691 12.733 hybrid contribution 0.440 -0.904 0.895 1.347 sum 3.799 5.141 -9.796 11.697 Atomic orbital electron populations 1.20282 0.86556 1.03737 1.02837 1.21051 0.96901 0.86635 0.99610 1.70120 1.00472 1.30553 1.21031 1.25091 0.97393 0.82111 1.02273 1.43343 1.08136 1.08805 1.55578 0.73865 1.21045 0.84220 0.95352 1.19541 1.16796 0.85971 0.82482 0.76827 1.90810 1.15994 1.82873 1.50608 1.46108 1.09009 1.06711 1.74897 1.19354 0.92638 0.76721 1.02480 1.19426 1.05149 1.12922 0.92838 1.23690 0.93826 0.96358 0.99139 1.77187 1.20908 1.24927 0.90676 1.48519 1.23677 1.36582 1.05044 1.22610 0.88527 0.90906 0.99149 1.19916 0.98003 0.93433 0.78224 1.44189 1.06568 1.60593 1.20476 1.19119 1.16952 1.07231 0.96328 0.90870 1.25032 1.00517 0.95200 0.98171 1.69910 1.30149 1.11425 1.43157 0.86266 0.79338 0.79132 0.81443 1.20674 1.21277 1.20754 1.21284 0.89126 0.97331 0.92173 1.22582 0.88894 0.98713 0.90880 0.90935 0.89116 0.91227 0.76974 0.77460 0.90480 0.90949 0.80698 0.92797 0.87221 0.92900 0.89669 0.94698 0.90491 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.87 36.01 0.36 -0.63 16 2 C 0.09 1.32 7.15 -82.52 -0.59 0.73 16 3 N -0.50 -6.74 11.20 -10.64 -0.12 -6.86 16 4 C 0.22 2.12 13.01 -90.57 -1.18 0.94 16 5 N -0.55 -5.54 6.07 -10.79 -0.07 -5.61 16 6 H 0.42 2.99 8.32 -40.82 -0.34 2.65 16 7 C -0.09 -1.17 7.08 -82.14 -0.58 -1.76 16 8 C 0.59 9.07 7.79 -12.81 -0.10 8.97 16 9 O -0.53 -9.45 14.83 5.21 0.08 -9.38 16 10 N -0.72 -9.91 5.54 -62.77 -0.35 -10.25 16 11 C 0.21 3.21 5.95 -5.19 -0.03 3.18 16 12 C -0.29 -4.75 5.46 -105.21 -0.57 -5.33 16 13 C 0.06 0.87 11.97 -17.21 -0.21 0.67 16 14 N -0.32 -5.59 12.61 30.70 0.39 -5.20 16 15 N -0.36 -6.53 4.03 -56.90 -0.23 -6.76 16 16 C 0.12 2.26 6.71 -82.17 -0.55 1.71 16 17 C 0.23 5.00 5.11 -4.48 -0.02 4.98 16 18 N -0.60 -13.42 3.01 -172.93 -0.52 -13.94 16 19 C -0.27 -6.70 9.66 -15.06 -0.15 -6.84 16 20 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 21 C 0.01 0.27 5.00 -17.44 -0.09 0.18 16 22 N -0.90 -24.14 11.07 55.49 0.61 -23.53 16 23 Si 0.91 20.53 29.58 -169.99 -5.03 15.50 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 C 0.13 2.31 6.50 -3.56 -0.02 2.29 16 28 C 0.11 1.84 7.45 -3.85 -0.03 1.81 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.28 6.50 -51.93 -0.34 0.95 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.21 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.39 4.72 7.71 -40.82 -0.31 4.40 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.18 2.08 8.06 -52.49 -0.42 1.66 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.11 2.71 6.46 -51.93 -0.34 2.37 16 39 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.08 1.41 7.94 -51.93 -0.41 0.99 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -32.22 362.34 -9.05 -41.27 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.52 Total: 8.41 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -3.76 Total: 10.88 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -0.28 Total: -72.15 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.22 -9.05 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069884504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.013 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds