Wall clock time and date at job start Tue Mar 31 2020 05:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35540 * 125.67466 * 2 1 4 4 C 1.35452 * 108.86835 * 179.97438 * 3 2 1 5 5 C 1.39833 * 107.86716 * 359.74175 * 4 3 2 6 6 C 1.37649 * 125.68235 * 179.97438 * 2 1 3 7 7 C 1.46683 * 126.23161 * 0.02562 * 6 2 1 8 8 O 1.21693 * 120.00116 * 4.19619 * 7 6 2 9 9 N 1.34770 * 119.99642 * 184.19322 * 7 6 2 10 10 C 1.46510 * 119.99644 * 174.84260 * 9 7 6 11 11 H 1.08994 * 110.91718 * 37.45170 * 10 9 7 12 12 C 1.54914 * 111.00356 * 273.54407 * 10 9 7 13 13 N 1.47420 * 104.83439 * 204.91817 * 12 10 9 14 14 C 1.36932 * 125.65196 * 204.09835 * 13 12 10 15 15 H 1.07995 * 120.00624 * 180.02562 * 14 13 12 16 16 C 1.38816 * 119.99903 * 0.03758 * 14 13 12 17 17 N 1.31621 * 119.99655 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00390 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47138 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47293 * 119.99980 * 18 16 14 21 21 H 1.48499 * 109.47504 * 240.00140 * 18 16 14 22 22 C 1.47027 * 108.70100 * 24.12806 * 13 12 10 23 23 C 1.54322 * 107.40090 * 358.86534 * 22 13 12 24 24 H 1.09003 * 110.71994 * 219.51582 * 23 22 13 25 25 N 1.46498 * 110.71825 * 96.24965 * 23 22 13 26 26 C 1.35310 * 125.86707 * 326.44752 * 25 23 22 27 27 C 1.35351 * 106.17804 * 180.02562 * 26 25 23 28 28 N 1.33772 * 106.49301 * 0.02562 * 27 26 25 29 29 N 1.28628 * 108.88671 * 359.73488 * 28 27 26 30 30 H 1.09004 * 109.47307 * 265.04202 * 1 2 3 31 31 H 1.08995 * 109.47496 * 25.04831 * 1 2 3 32 32 H 1.09003 * 109.46940 * 145.05138 * 1 2 3 33 33 H 1.07999 * 125.56501 * 0.02562 * 3 2 1 34 34 H 1.08006 * 126.06098 * 180.02562 * 4 3 2 35 35 H 1.08001 * 126.45451 * 180.30707 * 5 4 3 36 36 H 0.97000 * 120.00547 * 354.84511 * 9 7 6 37 37 H 1.09002 * 110.36346 * 86.08030 * 12 10 9 38 38 H 1.08997 * 110.45690 * 323.80814 * 12 10 9 39 39 H 0.97004 * 119.99967 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.88102 * 118.36256 * 22 13 12 41 41 H 1.08996 * 109.88126 * 239.36709 * 22 13 12 42 42 H 1.07997 * 126.91772 * 0.02572 * 26 25 23 43 43 H 1.07997 * 126.75882 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6887 0.0069 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 0.6245 -2.7646 -0.0769 9 7 2.7099 -3.5143 0.0865 10 6 2.2509 -4.9009 0.2005 11 1 1.3632 -5.0684 -0.4093 12 6 1.9880 -5.2789 1.6796 13 7 2.1434 -6.7441 1.7281 14 6 1.5787 -7.5763 2.6574 15 1 1.7543 -8.6407 2.6068 16 6 0.7801 -7.0518 3.6645 17 7 0.5655 -5.7547 3.7258 18 14 0.0103 -8.1869 4.9326 19 1 0.4026 -9.5898 4.6443 20 1 0.4842 -7.8085 6.2882 21 1 -1.4685 -8.0648 4.8734 22 6 3.0059 -7.1638 0.6138 23 6 3.3816 -5.8960 -0.1819 24 1 3.3756 -6.0971 -1.2531 25 7 4.6869 -5.3849 0.2437 26 6 5.1923 -5.4469 1.4973 27 6 6.4112 -4.8610 1.4420 28 7 6.5892 -4.4738 0.1740 29 7 5.5519 -4.8034 -0.5116 30 1 -0.3634 -0.0888 1.0238 31 1 -0.3634 0.9309 -0.4351 32 1 -0.3633 -0.8424 -0.5887 33 1 1.9081 2.1237 0.0004 34 1 4.4132 1.3614 0.0011 35 1 4.4584 -1.3142 0.0136 36 1 3.6596 -3.3173 0.0728 37 1 0.9763 -4.9950 1.9696 38 1 2.7177 -4.7982 2.3311 39 1 0.0072 -5.3882 4.4293 40 1 3.9071 -7.6390 1.0012 41 1 2.4676 -7.8595 -0.0298 42 1 4.7185 -5.8773 2.3672 43 1 7.1034 -4.7308 2.2606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069897166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:21 Heat of formation + Delta-G solvation = 162.857115 kcal Electronic energy + Delta-G solvation = -29097.711717 eV Core-core repulsion = 25182.954368 eV Total energy + Delta-G solvation = -3914.757349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.05660 -41.28483 -39.21063 -37.64747 -34.32985 -33.64816 -32.65411 -31.77833 -30.67497 -29.79582 -28.52694 -27.41847 -26.45697 -24.99032 -23.09650 -22.39812 -22.20803 -20.71397 -20.31782 -20.05629 -19.47638 -18.07496 -17.43897 -17.05161 -16.08509 -15.62576 -15.52714 -15.26562 -14.78388 -14.66014 -14.24706 -14.05184 -13.94357 -13.49694 -13.34685 -13.21214 -12.96402 -12.74350 -12.45658 -12.35606 -12.24909 -11.97386 -11.87445 -11.46229 -11.39554 -11.05492 -10.84788 -10.71707 -10.50184 -10.18760 -10.01522 -9.83147 -9.75254 -9.07644 -8.86906 -8.77378 -8.71201 -8.16982 -7.14993 -5.85773 -3.32513 1.57933 1.88727 2.51670 2.71498 2.78332 2.84052 3.29370 3.34954 3.37959 3.47719 3.59264 4.28566 4.55311 4.66114 4.80043 4.87595 4.92208 4.97552 5.05724 5.27345 5.30394 5.38995 5.41582 5.45063 5.50065 5.57466 5.65053 5.75344 5.80459 6.06611 6.07835 6.12585 6.17228 6.20651 6.42513 6.53963 6.76569 6.92848 7.00008 7.14042 7.22678 7.38025 7.60999 7.69759 8.09398 8.40752 8.77035 8.95831 9.56647 10.14116 11.17173 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.004808 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.398622 B = 5821.789545 C = 7717.416601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.410 5.410 3 C 0.009 3.991 4 C -0.207 4.207 5 C -0.141 4.141 6 C -0.046 4.046 7 C 0.592 3.408 8 O -0.542 6.542 9 N -0.706 5.706 10 C 0.114 3.886 11 H 0.115 0.885 12 C 0.144 3.856 13 N -0.598 5.598 14 C -0.236 4.236 15 H 0.084 0.916 16 C -0.002 4.002 17 N -0.914 5.914 18 Si 0.918 3.082 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.129 3.871 23 C 0.117 3.883 24 H 0.122 0.878 25 N -0.278 5.278 26 C -0.017 4.017 27 C -0.068 4.068 28 N -0.275 5.275 29 N -0.102 5.102 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.398 0.602 37 H 0.122 0.878 38 H 0.023 0.977 39 H 0.256 0.744 40 H 0.042 0.958 41 H 0.056 0.944 42 H 0.194 0.806 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.530 9.072 -6.740 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.083 5.083 3 C -0.127 4.127 4 C -0.231 4.231 5 C -0.167 4.167 6 C -0.159 4.159 7 C 0.380 3.620 8 O -0.420 6.420 9 N -0.357 5.357 10 C 0.007 3.993 11 H 0.133 0.867 12 C 0.018 3.982 13 N -0.325 5.325 14 C -0.363 4.363 15 H 0.101 0.899 16 C -0.199 4.199 17 N -0.561 5.561 18 Si 0.748 3.252 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.002 3.998 23 C 0.014 3.986 24 H 0.140 0.860 25 N -0.071 5.071 26 C -0.168 4.168 27 C -0.225 4.225 28 N -0.142 5.142 29 N -0.081 5.081 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.185 0.815 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.234 0.766 37 H 0.140 0.860 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.211 0.789 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.427 9.334 -8.032 12.782 hybrid contribution -0.181 -0.800 1.884 2.055 sum 3.246 8.534 -6.147 11.007 Atomic orbital electron populations 1.22262 0.76068 1.04604 1.04458 1.43839 1.06833 1.04919 1.52665 1.21981 0.90719 0.91403 1.08556 1.20786 0.95961 0.94910 1.11479 1.21346 0.94450 0.95574 1.05351 1.20073 0.90411 0.87665 1.17799 1.16880 0.85605 0.83351 0.76193 1.90797 1.15941 1.84730 1.50538 1.45405 1.09664 1.05868 1.74780 1.23117 0.95014 0.78244 1.02946 0.86679 1.22425 1.05045 0.83469 0.87247 1.44399 1.55710 1.02827 1.29605 1.19062 1.24148 0.89578 1.03509 0.89867 1.24838 0.99908 0.96130 0.98994 1.69764 1.41909 1.09871 1.34505 0.85960 0.78905 0.79413 0.80909 1.20364 1.21586 1.21552 1.21660 0.95653 0.91565 0.90921 1.23250 0.77389 0.96653 1.01293 0.85972 1.47443 1.14622 1.37964 1.07117 1.23914 0.96450 1.05668 0.90794 1.23546 0.97610 1.04882 0.96432 1.75041 1.16354 1.18939 1.03835 1.78267 0.95939 1.13764 1.20154 0.90415 0.90068 0.87991 0.81540 0.84089 0.84279 0.76601 0.86012 0.95925 0.93361 0.94039 0.92653 0.78891 0.79678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.49 59.85 0.63 1.41 16 2 N -0.41 -5.68 3.16 -120.23 -0.38 -6.06 16 3 C 0.01 0.10 11.37 -16.91 -0.19 -0.09 16 4 C -0.21 -2.56 10.81 -39.98 -0.43 -2.99 16 5 C -0.14 -2.05 10.35 -39.12 -0.41 -2.46 16 6 C -0.05 -0.74 6.89 -81.98 -0.56 -1.30 16 7 C 0.59 10.83 7.77 -12.85 -0.10 10.73 16 8 O -0.54 -11.17 14.47 5.19 0.08 -11.09 16 9 N -0.71 -12.18 5.16 -52.90 -0.27 -12.46 16 10 C 0.11 2.06 3.23 -65.64 -0.21 1.84 16 11 H 0.12 2.16 7.66 -51.93 -0.40 1.76 16 12 C 0.14 3.18 5.07 -2.53 -0.01 3.17 16 13 N -0.60 -13.27 3.39 -170.07 -0.58 -13.85 16 14 C -0.24 -5.88 10.27 -15.06 -0.15 -6.03 16 15 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 16 C 0.00 -0.05 5.49 -17.43 -0.10 -0.14 16 17 N -0.91 -25.11 10.09 55.49 0.56 -24.55 16 18 Si 0.92 20.75 29.55 -169.99 -5.02 15.73 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.13 2.26 6.31 -3.06 -0.02 2.24 16 23 C 0.12 1.84 3.99 -65.97 -0.26 1.58 16 24 H 0.12 1.64 8.14 -51.93 -0.42 1.22 16 25 N -0.28 -4.40 2.26 -52.86 -0.12 -4.52 16 26 C -0.02 -0.26 9.24 -17.05 -0.16 -0.42 16 27 C -0.07 -0.99 12.05 -17.74 -0.21 -1.20 16 28 N -0.28 -4.53 12.41 30.23 0.38 -4.16 16 29 N -0.10 -1.69 12.50 60.35 0.75 -0.94 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.10 1.37 6.52 -51.93 -0.34 1.03 16 33 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 35 H 0.14 1.96 7.44 -52.49 -0.39 1.57 16 36 H 0.40 6.60 5.84 -40.82 -0.24 6.37 16 37 H 0.12 3.25 5.87 -51.93 -0.30 2.94 16 38 H 0.02 0.54 7.17 -51.93 -0.37 0.17 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.04 0.72 7.42 -51.93 -0.39 0.34 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.19 3.20 7.58 -52.49 -0.40 2.80 16 43 H 0.19 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -30.58 356.05 -6.77 -37.35 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.33 Total: 12.87 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.19 Total: 6.32 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.34 Total: -66.53 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.58 -6.77 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069897166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.206 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds