Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35540 * 125.67466 * 2 1 4 4 C 1.35452 * 108.86835 * 179.97438 * 3 2 1 5 5 C 1.39833 * 107.86716 * 359.74175 * 4 3 2 6 6 C 1.37649 * 125.68235 * 179.97438 * 2 1 3 7 7 C 1.46683 * 126.23161 * 0.02562 * 6 2 1 8 8 O 1.21693 * 120.00116 * 4.19619 * 7 6 2 9 9 N 1.34770 * 119.99642 * 184.19322 * 7 6 2 10 10 C 1.46510 * 119.99644 * 174.84260 * 9 7 6 11 11 H 1.08994 * 110.91718 * 37.45170 * 10 9 7 12 12 C 1.54914 * 111.00356 * 273.54407 * 10 9 7 13 13 N 1.47420 * 104.83439 * 204.91817 * 12 10 9 14 14 C 1.36932 * 125.65196 * 204.09835 * 13 12 10 15 15 H 1.07995 * 120.00624 * 180.02562 * 14 13 12 16 16 C 1.38816 * 119.99903 * 0.03758 * 14 13 12 17 17 N 1.31621 * 119.99655 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00390 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47138 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47293 * 119.99980 * 18 16 14 21 21 H 1.48499 * 109.47504 * 240.00140 * 18 16 14 22 22 C 1.47027 * 108.70100 * 24.12806 * 13 12 10 23 23 C 1.54322 * 107.40090 * 358.86534 * 22 13 12 24 24 H 1.09003 * 110.71994 * 219.51582 * 23 22 13 25 25 N 1.46498 * 110.71825 * 96.24965 * 23 22 13 26 26 C 1.35310 * 125.86707 * 326.44752 * 25 23 22 27 27 C 1.35351 * 106.17804 * 180.02562 * 26 25 23 28 28 N 1.33772 * 106.49301 * 0.02562 * 27 26 25 29 29 N 1.28628 * 108.88671 * 359.73488 * 28 27 26 30 30 H 1.09004 * 109.47307 * 265.04202 * 1 2 3 31 31 H 1.08995 * 109.47496 * 25.04831 * 1 2 3 32 32 H 1.09003 * 109.46940 * 145.05138 * 1 2 3 33 33 H 1.07999 * 125.56501 * 0.02562 * 3 2 1 34 34 H 1.08006 * 126.06098 * 180.02562 * 4 3 2 35 35 H 1.08001 * 126.45451 * 180.30707 * 5 4 3 36 36 H 0.97000 * 120.00547 * 354.84511 * 9 7 6 37 37 H 1.09002 * 110.36346 * 86.08030 * 12 10 9 38 38 H 1.08997 * 110.45690 * 323.80814 * 12 10 9 39 39 H 0.97004 * 119.99967 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.88102 * 118.36256 * 22 13 12 41 41 H 1.08996 * 109.88126 * 239.36709 * 22 13 12 42 42 H 1.07997 * 126.91772 * 0.02572 * 26 25 23 43 43 H 1.07997 * 126.75882 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 0.0006 5 6 3.5780 -0.6887 0.0069 6 6 2.2679 -1.1181 0.0005 7 6 1.8125 -2.5124 0.0006 8 8 0.6245 -2.7646 -0.0769 9 7 2.7099 -3.5143 0.0865 10 6 2.2509 -4.9009 0.2005 11 1 1.3632 -5.0684 -0.4093 12 6 1.9880 -5.2789 1.6796 13 7 2.1434 -6.7441 1.7281 14 6 1.5787 -7.5763 2.6574 15 1 1.7543 -8.6407 2.6068 16 6 0.7801 -7.0518 3.6645 17 7 0.5655 -5.7547 3.7258 18 14 0.0103 -8.1869 4.9326 19 1 0.4026 -9.5898 4.6443 20 1 0.4842 -7.8085 6.2882 21 1 -1.4685 -8.0648 4.8734 22 6 3.0059 -7.1638 0.6138 23 6 3.3816 -5.8960 -0.1819 24 1 3.3756 -6.0971 -1.2531 25 7 4.6869 -5.3849 0.2437 26 6 5.1923 -5.4469 1.4973 27 6 6.4112 -4.8610 1.4420 28 7 6.5892 -4.4738 0.1740 29 7 5.5519 -4.8034 -0.5116 30 1 -0.3634 -0.0888 1.0238 31 1 -0.3634 0.9309 -0.4351 32 1 -0.3633 -0.8424 -0.5887 33 1 1.9081 2.1237 0.0004 34 1 4.4132 1.3614 0.0011 35 1 4.4584 -1.3142 0.0136 36 1 3.6596 -3.3173 0.0728 37 1 0.9763 -4.9950 1.9696 38 1 2.7177 -4.7982 2.3311 39 1 0.0072 -5.3882 4.4293 40 1 3.9071 -7.6390 1.0012 41 1 2.4676 -7.8595 -0.0298 42 1 4.7185 -5.8773 2.3672 43 1 7.1034 -4.7308 2.2606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069897166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = 142.738896 kcal Electronic energy + Delta-G solvation = -29098.584109 eV Core-core repulsion = 25182.954368 eV Total energy + Delta-G solvation = -3915.629741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.32692 -42.36553 -40.62733 -39.14739 -35.92940 -35.04728 -33.73250 -33.44636 -31.93196 -31.15833 -29.97250 -28.93119 -27.42095 -26.72416 -24.42362 -23.78760 -23.50379 -22.11172 -21.65655 -21.32777 -20.74474 -19.38264 -18.88115 -18.59828 -17.36939 -17.12567 -16.75947 -16.64510 -16.19911 -15.95007 -15.70863 -15.52678 -15.27759 -14.81749 -14.56232 -14.44289 -14.39311 -14.15451 -13.96826 -13.38763 -13.33469 -13.23456 -13.18210 -12.94015 -12.86028 -12.75154 -12.38673 -12.30930 -12.06108 -11.92787 -11.80739 -11.20973 -11.15763 -10.80124 -10.31518 -10.27702 -9.74786 -9.24001 -9.01117 -7.81690 -5.29148 0.39280 0.59936 1.23535 1.48154 1.49421 1.58332 1.58923 1.62875 1.79134 2.23710 2.29357 2.46711 3.15167 3.30092 3.35584 3.48766 3.66649 3.71397 3.88680 3.94873 4.14742 4.16004 4.24513 4.30406 4.34257 4.37773 4.39856 4.49369 4.69146 4.70409 4.76827 4.78540 5.06611 5.08894 5.21931 5.27045 5.36842 5.47481 5.62831 5.69674 5.74837 5.91856 6.18466 6.28116 6.33636 6.98405 7.03514 7.50641 7.67455 8.25928 9.19309 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010211 B = 0.004808 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.398622 B = 5821.789545 C = 7717.416601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.418 5.418 3 C 0.031 3.969 4 C -0.218 4.218 5 C -0.140 4.140 6 C -0.091 4.091 7 C 0.585 3.415 8 O -0.577 6.577 9 N -0.700 5.700 10 C 0.125 3.875 11 H 0.108 0.892 12 C 0.161 3.839 13 N -0.613 5.613 14 C -0.233 4.233 15 H 0.094 0.906 16 C -0.060 4.060 17 N -0.946 5.946 18 Si 0.978 3.022 19 H -0.261 1.261 20 H -0.296 1.296 21 H -0.298 1.298 22 C 0.130 3.870 23 C 0.132 3.868 24 H 0.156 0.844 25 N -0.277 5.277 26 C -0.029 4.029 27 C -0.054 4.054 28 N -0.289 5.289 29 N -0.108 5.108 30 H 0.071 0.929 31 H 0.125 0.875 32 H 0.076 0.924 33 H 0.213 0.787 34 H 0.169 0.831 35 H 0.138 0.862 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.000 1.000 39 H 0.245 0.755 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.183 0.817 43 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 9.946 -7.676 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.090 5.090 3 C -0.105 4.105 4 C -0.241 4.241 5 C -0.167 4.167 6 C -0.204 4.204 7 C 0.375 3.625 8 O -0.458 6.458 9 N -0.351 5.351 10 C 0.017 3.983 11 H 0.125 0.875 12 C 0.034 3.966 13 N -0.341 5.341 14 C -0.362 4.362 15 H 0.112 0.888 16 C -0.253 4.253 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.185 1.185 20 H -0.223 1.223 21 H -0.226 1.226 22 C 0.004 3.996 23 C 0.029 3.971 24 H 0.173 0.827 25 N -0.071 5.071 26 C -0.180 4.180 27 C -0.211 4.211 28 N -0.155 5.155 29 N -0.087 5.087 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.095 0.905 33 H 0.230 0.770 34 H 0.186 0.814 35 H 0.155 0.845 36 H 0.239 0.761 37 H 0.092 0.908 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.200 0.800 43 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 4.988 10.177 -9.001 14.473 hybrid contribution -0.584 -0.990 2.161 2.448 sum 4.404 9.187 -6.840 12.271 Atomic orbital electron populations 1.22342 0.75225 1.05865 1.04013 1.44105 1.07598 1.04892 1.52443 1.22794 0.90217 0.92506 1.04959 1.21180 0.97484 0.93994 1.11421 1.21524 0.93705 0.97037 1.04443 1.19917 0.91640 0.87201 1.21646 1.17348 0.85213 0.84591 0.75347 1.90767 1.17275 1.85416 1.52344 1.45307 1.09765 1.05426 1.74572 1.22739 0.96150 0.79477 0.99945 0.87462 1.21927 1.01457 0.83726 0.89482 1.44526 1.56427 1.02643 1.30456 1.19452 1.22913 0.90396 1.03404 0.88805 1.25594 1.01247 0.97199 1.01242 1.70053 1.43026 1.11520 1.34895 0.85019 0.77270 0.78675 0.78383 1.18518 1.22277 1.22562 1.21813 0.95311 0.92648 0.89877 1.23163 0.76558 0.94616 1.02729 0.82693 1.47423 1.14484 1.38027 1.07174 1.23903 0.97068 1.06517 0.90523 1.24045 0.97425 1.03062 0.96541 1.75045 1.16430 1.19393 1.04610 1.78258 0.96135 1.13974 1.20325 0.91067 0.85689 0.90476 0.77017 0.81358 0.84470 0.76079 0.90825 0.98234 0.94547 0.93044 0.90527 0.79999 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 10.49 127.77 1.34 2.84 16 2 N -0.42 -11.12 3.16 -534.30 -1.69 -12.81 16 3 C 0.03 0.62 11.37 83.48 0.95 1.57 16 4 C -0.22 -4.79 10.81 22.01 0.24 -4.56 16 5 C -0.14 -3.97 10.35 22.57 0.23 -3.74 16 6 C -0.09 -2.98 6.89 40.35 0.28 -2.70 16 7 C 0.59 22.38 7.77 86.45 0.67 23.05 16 8 O -0.58 -25.29 14.47 -4.33 -0.06 -25.36 16 9 N -0.70 -24.91 5.16 -439.50 -2.27 -27.17 16 10 C 0.12 4.61 3.23 46.47 0.15 4.76 16 11 H 0.11 4.18 7.66 -2.39 -0.02 4.16 16 12 C 0.16 7.44 5.07 86.86 0.44 7.88 16 13 N -0.61 -27.58 3.39 -691.99 -2.35 -29.93 16 14 C -0.23 -11.73 10.27 84.04 0.86 -10.86 16 15 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 16 C -0.06 -3.18 5.49 84.86 0.47 -2.71 16 17 N -0.95 -54.61 10.09 21.65 0.22 -54.39 16 18 Si 0.98 43.50 29.55 68.60 2.03 45.53 16 19 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 22 C 0.13 4.37 6.31 86.73 0.55 4.92 16 23 C 0.13 4.01 3.99 46.26 0.18 4.20 16 24 H 0.16 3.77 8.14 -2.39 -0.02 3.75 16 25 N -0.28 -8.49 2.26 -321.15 -0.73 -9.21 16 26 C -0.03 -0.88 9.24 83.49 0.77 -0.11 16 27 C -0.05 -1.48 12.05 83.73 1.01 -0.47 16 28 N -0.29 -9.00 12.41 -58.26 -0.72 -9.72 16 29 N -0.11 -3.42 12.50 37.02 0.46 -2.96 16 30 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.12 1.65 8.12 -2.39 -0.02 1.63 16 32 H 0.08 2.15 6.52 -2.39 -0.02 2.14 16 33 H 0.21 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 35 H 0.14 3.81 7.44 -2.91 -0.02 3.79 16 36 H 0.40 13.52 5.84 -92.71 -0.54 12.98 16 37 H 0.07 4.20 5.87 -2.39 -0.01 4.19 16 38 H 0.00 -0.01 7.17 -2.39 -0.02 -0.03 16 39 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.05 1.69 7.42 -2.38 -0.02 1.67 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.18 6.07 7.58 -2.91 -0.02 6.05 16 43 H 0.22 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -70.04 356.05 3.54 -66.49 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.51 Total: 35.47 kcal Atomic # 6 Polarization: 15.93 SS G_CDS: 8.14 Total: 24.07 kcal Atomic # 7 Polarization: -139.13 SS G_CDS: -7.07 Total: -146.20 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.06 Total: -25.36 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.04 3.54 -66.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069897166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.232 kcal (2) G-P(sol) polarization free energy of solvation -70.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds