Wall clock time and date at job start Tue Mar 31 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48497 * 109.47302 * 85.01538 * 3 2 1 5 5 H 1.48500 * 109.47226 * 205.01852 * 3 2 1 6 6 H 1.48507 * 109.46840 * 325.01372 * 3 2 1 7 7 C 1.38811 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99874 * 189.06619 * 7 2 1 9 9 N 1.36933 * 120.00083 * 9.07202 * 7 2 1 10 10 C 1.47422 * 125.65011 * 10.43368 * 9 7 2 11 11 C 1.55135 * 104.72256 * 155.82266 * 10 9 7 12 12 H 1.08998 * 110.93741 * 155.29277 * 11 10 9 13 13 N 1.46495 * 111.19043 * 279.19191 * 11 10 9 14 14 C 1.34774 * 120.00487 * 267.18763 * 13 11 10 15 15 O 1.21285 * 119.99504 * 0.02562 * 14 13 11 16 16 C 1.50696 * 120.00463 * 180.02562 * 14 13 11 17 17 C 1.50702 * 109.47322 * 179.97438 * 16 14 13 18 18 C 1.34841 * 125.88926 * 274.68888 * 17 16 14 19 19 C 1.40894 * 107.41717 * 179.88467 * 18 17 16 20 20 C 1.34854 * 107.41841 * 0.37945 * 19 18 17 21 21 N 1.36342 * 125.88853 * 94.99903 * 17 16 14 22 22 H 0.97003 * 125.63798 * 359.94924 * 21 17 16 23 23 C 1.55152 * 101.48415 * 37.29963 * 11 10 9 24 24 H 1.08999 * 110.87523 * 82.76908 * 23 11 10 25 25 N 1.46504 * 110.71932 * 205.96752 * 23 11 10 26 26 C 1.35319 * 125.86273 * 79.97381 * 25 23 11 27 27 C 1.35356 * 106.17081 * 180.02562 * 26 25 23 28 28 N 1.33778 * 106.49725 * 0.02562 * 27 26 25 29 29 N 1.28636 * 108.88288 * 359.73398 * 28 27 26 30 30 C 1.47026 * 125.64923 * 190.75392 * 9 7 2 31 31 H 0.96996 * 119.99869 * 359.97438 * 1 2 3 32 32 H 1.09002 * 110.37089 * 274.75297 * 10 9 7 33 33 H 1.09000 * 110.36744 * 37.07318 * 10 9 7 34 34 H 0.97003 * 119.99768 * 87.18916 * 13 11 10 35 35 H 1.09006 * 109.46551 * 299.99628 * 16 14 13 36 36 H 1.09001 * 109.47524 * 59.99816 * 16 14 13 37 37 H 1.07999 * 126.29499 * 0.02562 * 18 17 16 38 38 H 1.08005 * 126.29303 * 180.12588 * 19 18 17 39 39 H 1.07993 * 125.89516 * 179.73895 * 20 19 18 40 40 H 1.07998 * 126.91894 * 359.97438 * 26 25 23 41 41 H 1.07995 * 126.75180 * 179.97438 * 27 26 25 42 42 H 1.09005 * 109.87591 * 300.43035 * 30 9 7 43 43 H 1.08999 * 109.88604 * 61.43813 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 1.3947 5 1 3.5965 1.4120 -0.5921 6 1 1.5043 2.6199 -0.8028 7 6 2.0103 -1.2021 -0.0005 8 1 3.0802 -1.2081 0.1468 9 7 1.3384 -2.3805 -0.1880 10 6 -0.0674 -2.5099 -0.6125 11 6 -0.1553 -3.9160 -1.2621 12 1 -1.1741 -4.3012 -1.2207 13 7 0.3392 -3.8943 -2.6408 14 6 -0.5186 -3.6969 -3.6615 15 8 -1.6999 -3.5368 -3.4383 16 6 -0.0100 -3.6751 -5.0798 17 6 -1.1617 -3.4401 -6.0230 18 6 -1.9809 -4.3878 -6.5218 19 6 -2.9159 -3.7414 -7.3543 20 6 -2.6271 -2.4242 -7.3391 21 7 -1.5512 -2.2332 -6.5236 22 1 -1.1325 -1.3796 -6.3311 23 6 0.7881 -4.7391 -0.3457 24 1 0.2667 -5.0684 0.5530 25 7 1.3437 -5.8853 -1.0695 26 6 2.3837 -5.8483 -1.9345 27 6 2.5590 -7.1186 -2.3678 28 7 1.6296 -7.8606 -1.7552 29 7 0.9291 -7.1011 -0.9889 30 6 1.8977 -3.7262 0.0070 31 1 -0.4850 0.8400 0.0004 32 1 -0.7315 -2.4455 0.2494 33 1 -0.3158 -1.7393 -1.3422 34 1 1.2841 -4.0219 -2.8193 35 1 0.7208 -2.8740 -5.1914 36 1 0.4601 -4.6307 -5.3121 37 1 -1.9311 -5.4473 -6.3186 38 1 -3.7144 -4.2144 -7.9067 39 1 -3.1563 -1.6537 -7.8799 40 1 2.9577 -4.9799 -2.2220 41 1 3.3024 -7.4649 -3.0705 42 1 2.7544 -3.8705 -0.6514 43 1 2.2030 -3.8538 1.0456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070100166.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:38 Heat of formation + Delta-G solvation = 151.655163 kcal Electronic energy + Delta-G solvation = -28714.751789 eV Core-core repulsion = 24799.508687 eV Total energy + Delta-G solvation = -3915.243102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.17504 -41.07706 -39.56014 -37.78485 -34.23410 -33.50420 -32.09600 -31.60116 -30.96935 -30.81451 -29.01813 -27.77215 -26.34441 -24.98414 -22.85751 -22.36971 -21.37557 -20.51164 -20.32188 -20.16109 -19.88126 -17.95812 -17.40404 -17.19330 -16.75031 -16.05784 -15.44540 -15.19792 -14.95138 -14.69632 -14.32150 -14.11255 -13.82170 -13.59238 -13.41252 -13.30306 -13.14854 -12.76452 -12.40053 -12.17695 -12.07597 -11.74139 -11.59901 -11.53964 -11.45007 -11.19084 -11.04339 -10.86007 -10.68826 -10.30379 -10.07833 -9.83932 -9.66906 -9.29479 -8.90015 -8.74751 -8.73003 -7.95013 -7.14812 -6.01037 -3.38509 1.72169 2.26852 2.41205 2.68816 2.87037 3.06193 3.23017 3.29066 3.31276 3.35190 3.56567 4.23184 4.47756 4.55753 4.69047 4.72357 5.01841 5.06529 5.08832 5.14020 5.22909 5.25737 5.27313 5.30871 5.38040 5.59231 5.64028 5.80123 5.88531 5.95547 6.01671 6.14862 6.24281 6.30536 6.39423 6.44913 6.78978 7.07445 7.13647 7.21203 7.23176 7.50768 7.62039 7.71112 7.93038 8.45788 8.64321 8.87402 9.49200 10.10364 11.10909 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.007789 B = 0.005224 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3593.909104 B = 5358.748293 C = 8209.448615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.003 3.997 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.242 4.242 8 H 0.080 0.920 9 N -0.594 5.594 10 C 0.167 3.833 11 C 0.113 3.887 12 H 0.105 0.895 13 N -0.711 5.711 14 C 0.515 3.485 15 O -0.525 6.525 16 C -0.072 4.072 17 C 0.038 3.962 18 C -0.183 4.183 19 C -0.202 4.202 20 C -0.014 4.014 21 N -0.551 5.551 22 H 0.412 0.588 23 C 0.116 3.884 24 H 0.132 0.868 25 N -0.266 5.266 26 C -0.053 4.053 27 C -0.055 4.055 28 N -0.280 5.280 29 N -0.084 5.084 30 C 0.129 3.871 31 H 0.257 0.743 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.161 0.839 40 H 0.188 0.812 41 H 0.187 0.813 42 H 0.037 0.963 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.922 -6.648 -10.923 13.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.196 4.196 3 Si 0.743 3.257 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.041 3.959 11 C 0.005 3.995 12 H 0.122 0.878 13 N -0.364 5.364 14 C 0.301 3.699 15 O -0.400 6.400 16 C -0.113 4.113 17 C -0.075 4.075 18 C -0.207 4.207 19 C -0.227 4.227 20 C -0.145 4.145 21 N -0.146 5.146 22 H 0.249 0.751 23 C 0.013 3.987 24 H 0.150 0.850 25 N -0.059 5.059 26 C -0.204 4.204 27 C -0.213 4.213 28 N -0.145 5.145 29 N -0.064 5.064 30 C 0.002 3.998 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.230 0.770 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.179 0.821 40 H 0.205 0.795 41 H 0.204 0.796 42 H 0.055 0.945 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.021 -7.126 -10.052 12.364 hybrid contribution 1.854 2.133 -0.261 2.838 sum 2.874 -4.993 -10.313 11.813 Atomic orbital electron populations 1.69910 1.05049 1.25850 1.54831 1.24872 0.95616 0.98039 1.01040 0.86099 0.78696 0.83125 0.77762 1.21309 1.20434 1.21517 1.18949 0.91048 0.81992 1.44956 0.90238 1.44388 1.09376 0.99013 1.79360 1.21971 0.86070 0.90118 0.97741 1.22947 0.97012 0.98939 0.80581 0.87757 1.45741 1.11042 1.73879 1.05698 1.20397 0.86530 0.76497 0.86503 1.90743 1.16292 1.47833 1.85098 1.20112 0.95874 1.05028 0.90254 1.19470 1.00721 0.85405 1.01951 1.20588 0.98341 0.98511 1.03301 1.20828 1.02880 0.93281 1.05707 1.21749 0.93391 0.98213 1.01132 1.41904 1.26381 1.08465 1.37833 0.75147 1.23347 0.97308 0.82117 0.95886 0.85041 1.47463 1.21420 1.08325 1.28736 1.23575 0.96075 1.01625 0.99162 1.23538 1.02247 0.90322 1.05212 1.75089 1.05663 1.26233 1.07516 1.78307 1.21142 0.87594 1.19322 1.21599 0.92756 0.85901 0.99587 0.93227 0.93562 0.89539 0.77007 0.88309 0.87078 0.85175 0.84985 0.82143 0.79530 0.79632 0.94525 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.69 10.68 55.49 0.59 -24.10 16 2 C 0.00 0.06 5.40 -17.43 -0.09 -0.03 16 3 Si 0.91 20.24 29.56 -169.99 -5.03 15.22 16 4 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -5.91 10.24 -15.06 -0.15 -6.06 16 8 H 0.08 1.88 7.85 -52.48 -0.41 1.46 16 9 N -0.59 -12.77 3.39 -169.93 -0.58 -13.35 16 10 C 0.17 3.57 5.13 -2.41 -0.01 3.56 16 11 C 0.11 1.92 3.29 -65.66 -0.22 1.70 16 12 H 0.10 1.89 7.54 -51.93 -0.39 1.50 16 13 N -0.71 -10.80 4.67 -51.62 -0.24 -11.04 16 14 C 0.52 8.31 7.82 -10.99 -0.09 8.23 16 15 O -0.52 -10.73 15.67 5.55 0.09 -10.64 16 16 C -0.07 -0.87 6.24 -29.04 -0.18 -1.05 16 17 C 0.04 0.52 5.66 -81.79 -0.46 0.05 16 18 C -0.18 -2.59 10.76 -39.78 -0.43 -3.02 16 19 C -0.20 -2.63 10.86 -39.78 -0.43 -3.06 16 20 C -0.01 -0.16 11.94 -16.74 -0.20 -0.36 16 21 N -0.55 -6.82 6.07 -9.12 -0.06 -6.88 16 22 H 0.41 4.23 8.96 -40.82 -0.37 3.86 16 23 C 0.12 1.76 3.85 -66.10 -0.25 1.51 16 24 H 0.13 1.90 8.14 -51.93 -0.42 1.47 16 25 N -0.27 -3.82 3.14 -52.98 -0.17 -3.99 16 26 C -0.05 -0.63 8.48 -17.04 -0.14 -0.77 16 27 C -0.06 -0.66 12.05 -17.73 -0.21 -0.88 16 28 N -0.28 -4.39 12.41 30.24 0.38 -4.02 16 29 N -0.08 -1.38 13.16 60.35 0.79 -0.59 16 30 C 0.13 2.16 6.85 -3.06 -0.02 2.14 16 31 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.09 2.16 6.95 -51.93 -0.36 1.80 16 34 H 0.39 5.14 6.08 -40.82 -0.25 4.90 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 39 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.19 1.73 6.48 -52.49 -0.34 1.39 16 41 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.04 0.57 6.02 -51.93 -0.31 0.25 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 359.73 15.07 5.42 5.42 Total: -1.00 -32.88 359.73 -7.06 -39.95 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -5.37 Total: 12.05 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -2.90 Total: 1.96 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.72 Total: -63.95 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.88 -7.06 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070100166.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.601 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds