Wall clock time and date at job start Tue Mar 31 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99863 * 2 1 4 4 H 1.48504 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47338 * 300.00336 * 3 2 1 6 6 H 1.48494 * 109.47342 * 60.00661 * 3 2 1 7 7 C 1.38812 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00382 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.46508 * 120.00122 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.63518 * 31.86020 * 10 9 7 12 12 C 1.54325 * 110.87021 * 268.61147 * 10 9 7 13 13 N 1.47018 * 107.26892 * 219.37145 * 12 10 9 14 14 C 1.34781 * 125.64852 * 178.98940 * 13 12 10 15 15 O 1.21286 * 120.00187 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99829 * 359.97419 * 14 13 12 17 17 C 1.50694 * 109.47110 * 180.02562 * 16 14 13 18 18 C 1.34855 * 125.89308 * 84.99823 * 17 16 14 19 19 C 1.40894 * 107.41922 * 180.02562 * 18 17 16 20 20 C 1.34850 * 107.41579 * 0.02562 * 19 18 17 21 21 N 1.36340 * 125.89216 * 264.69693 * 17 16 14 22 22 H 0.97002 * 125.64080 * 359.97438 * 21 17 16 23 23 C 1.47423 * 108.70681 * 358.94202 * 13 12 10 24 24 C 1.54914 * 104.83031 * 24.12703 * 23 13 12 25 25 H 1.09002 * 111.00586 * 204.91807 * 24 23 13 26 26 N 1.46508 * 111.03460 * 81.07949 * 24 23 13 27 27 C 1.35305 * 125.86755 * 329.32234 * 26 24 23 28 28 C 1.35348 * 106.17551 * 179.90491 * 27 26 24 29 29 N 1.33776 * 106.49477 * 0.35266 * 28 27 26 30 30 N 1.28632 * 108.88589 * 359.77320 * 29 28 27 31 31 H 0.96993 * 120.00365 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99930 * 0.02562 * 9 7 2 33 33 H 1.08992 * 109.88412 * 338.79064 * 12 10 9 34 34 H 1.08999 * 109.87974 * 99.95730 * 12 10 9 35 35 H 1.09001 * 109.47147 * 299.99957 * 16 14 13 36 36 H 1.08995 * 109.47104 * 60.00205 * 16 14 13 37 37 H 1.07997 * 126.28648 * 0.02562 * 18 17 16 38 38 H 1.07999 * 126.28801 * 180.02562 * 19 18 17 39 39 H 1.07998 * 125.88749 * 180.02562 * 20 19 18 40 40 H 1.08998 * 110.36740 * 265.29591 * 23 13 12 41 41 H 1.08994 * 110.37022 * 142.96739 * 23 13 12 42 42 H 1.08000 * 126.91261 * 0.02562 * 27 26 24 43 43 H 1.08001 * 126.75257 * 180.12152 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0005 -3.5563 0.5379 12 6 2.3028 -4.1504 -1.4421 13 7 2.1161 -5.6087 -1.4417 14 6 2.2226 -6.4146 -2.5168 15 8 2.0473 -7.6089 -2.3992 16 6 2.5595 -5.8316 -3.8650 17 6 2.6175 -6.9354 -4.8893 18 6 1.5666 -7.4426 -5.5653 19 6 2.0598 -8.4512 -6.4165 20 6 3.3932 -8.5224 -6.2278 21 7 3.7422 -7.5897 -5.2965 22 1 4.6417 -7.4217 -4.9746 23 6 1.7942 -6.0438 -0.0704 24 6 1.1936 -4.7898 0.6127 25 1 1.3200 -4.8358 1.6944 26 7 -0.2182 -4.6234 0.2585 27 6 -0.7926 -4.9991 -0.9076 28 6 -2.0999 -4.6626 -0.8096 29 7 -2.2576 -4.0977 0.3927 30 7 -1.1242 -4.0896 1.0009 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 -0.0005 33 1 1.5869 -3.6853 -2.1197 34 1 3.3197 -3.9070 -1.7497 35 1 1.7933 -5.1110 -4.1510 36 1 3.5269 -5.3322 -3.8134 37 1 0.5364 -7.1325 -5.4715 38 1 1.4771 -9.0562 -7.0954 39 1 4.0688 -9.1975 -6.7319 40 1 2.6983 -6.3620 0.4487 41 1 1.0629 -6.8517 -0.0905 42 1 -0.3062 -5.4740 -1.7468 43 1 -2.8645 -4.8162 -1.5568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070331381.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:32 Heat of formation + Delta-G solvation = 148.463777 kcal Electronic energy + Delta-G solvation = -28602.387491 eV Core-core repulsion = 24687.006000 eV Total energy + Delta-G solvation = -3915.381491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85546 -41.24947 -39.92471 -37.78970 -34.34820 -33.57868 -32.10271 -31.34405 -30.97824 -30.51662 -29.50790 -27.79419 -26.64919 -24.28171 -23.60581 -22.18695 -21.75167 -20.73294 -20.37458 -20.14556 -19.49197 -17.74589 -17.68382 -17.34245 -16.99420 -15.86331 -15.66118 -15.28817 -14.73670 -14.62378 -14.24769 -14.06476 -13.74569 -13.69951 -13.54259 -13.33339 -13.27712 -12.92395 -12.63502 -12.46415 -12.31026 -12.24140 -11.80378 -11.66671 -11.28762 -11.17545 -11.02858 -10.97652 -10.45044 -10.23245 -10.04188 -9.97864 -9.61573 -9.18409 -8.88912 -8.88541 -8.70630 -8.10340 -7.30697 -5.95648 -3.32323 2.06963 2.10412 2.53830 2.68596 2.79956 3.08437 3.10461 3.26382 3.31346 3.36017 3.40009 4.11886 4.39482 4.50761 4.61067 4.81926 4.85776 4.92474 4.93117 5.10057 5.19543 5.28394 5.31077 5.42892 5.44810 5.45880 5.48202 5.58627 5.66717 5.68141 5.82389 5.96218 6.12838 6.17029 6.19270 6.26384 6.30494 6.58719 6.92479 7.03554 7.06018 7.37875 7.48513 7.51099 8.06934 8.16824 9.03085 9.29929 9.77434 10.11520 11.24023 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.003697 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.972996 B = 7572.695548 C = 8777.900247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.001 3.999 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.268 4.268 8 H 0.076 0.924 9 N -0.706 5.706 10 C 0.167 3.833 11 H 0.093 0.907 12 C 0.064 3.936 13 N -0.619 5.619 14 C 0.528 3.472 15 O -0.532 6.532 16 C -0.068 4.068 17 C 0.034 3.966 18 C -0.179 4.179 19 C -0.201 4.201 20 C -0.015 4.015 21 N -0.554 5.554 22 H 0.410 0.590 23 C 0.105 3.895 24 C 0.111 3.889 25 H 0.133 0.867 26 N -0.268 5.268 27 C -0.044 4.044 28 C -0.058 4.058 29 N -0.272 5.272 30 N -0.066 5.066 31 H 0.260 0.740 32 H 0.393 0.607 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.161 0.839 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.176 0.824 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.790 -14.895 -8.565 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.197 4.197 3 Si 0.740 3.260 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.398 4.398 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.052 3.948 11 H 0.111 0.889 12 C -0.062 4.062 13 N -0.355 5.355 14 C 0.316 3.684 15 O -0.408 6.408 16 C -0.109 4.109 17 C -0.079 4.079 18 C -0.204 4.204 19 C -0.225 4.225 20 C -0.146 4.146 21 N -0.148 5.148 22 H 0.246 0.754 23 C -0.019 4.019 24 C 0.006 3.994 25 H 0.151 0.849 26 N -0.062 5.062 27 C -0.195 4.195 28 C -0.215 4.215 29 N -0.138 5.138 30 N -0.046 5.046 31 H 0.070 0.930 32 H 0.230 0.770 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.193 0.807 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.618 -14.684 -7.142 18.018 hybrid contribution 0.946 0.579 -1.101 1.563 sum 8.564 -14.104 -8.243 18.445 Atomic orbital electron populations 1.69704 1.05194 1.26231 1.54735 1.24857 0.95485 0.98042 1.01332 0.86107 0.78731 0.83733 0.77402 1.20371 1.21624 1.21537 1.19209 0.91050 0.83494 1.46089 0.90623 1.42421 1.06357 0.98889 1.86965 1.21552 0.95116 0.86210 0.91914 0.88936 1.23540 1.01990 0.77613 1.03077 1.48640 1.70115 1.09188 1.07567 1.20254 0.77146 0.86159 0.84811 1.90743 1.49977 1.14827 1.85284 1.20093 1.05079 0.96052 0.89632 1.19517 0.86846 1.00024 1.01485 1.20642 0.97854 1.00805 1.01121 1.20862 0.93928 1.02972 1.04784 1.21751 0.97003 0.97721 0.98102 1.41874 1.08819 1.30069 1.34077 0.75370 1.22454 1.01012 0.95568 0.82873 1.23351 0.75756 0.97843 1.02440 0.84927 1.47128 1.09593 1.38020 1.11451 1.23414 0.94875 1.08098 0.93128 1.23467 0.95886 1.04447 0.97660 1.75096 1.15614 1.16694 1.06353 1.78386 0.92161 1.14589 1.19438 0.93016 0.77042 0.90312 0.91027 0.86521 0.88299 0.84939 0.84890 0.82129 0.88646 0.89389 0.80714 0.80033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.81 13.06 55.49 0.72 -26.09 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 3 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.27 -6.74 9.96 -15.06 -0.15 -6.89 16 8 H 0.08 1.79 7.83 -52.48 -0.41 1.38 16 9 N -0.71 -15.87 5.12 -51.65 -0.26 -16.14 16 10 C 0.17 2.68 3.48 -66.09 -0.23 2.45 16 11 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 12 C 0.06 0.86 5.77 -3.07 -0.02 0.84 16 13 N -0.62 -7.46 2.12 -170.53 -0.36 -7.82 16 14 C 0.53 6.70 7.61 -10.98 -0.08 6.62 16 15 O -0.53 -8.55 16.29 5.55 0.09 -8.46 16 16 C -0.07 -0.70 5.43 -29.04 -0.16 -0.86 16 17 C 0.03 0.39 5.66 -81.79 -0.46 -0.07 16 18 C -0.18 -2.21 10.77 -39.78 -0.43 -2.64 16 19 C -0.20 -2.24 10.86 -39.78 -0.43 -2.67 16 20 C -0.01 -0.14 11.94 -16.75 -0.20 -0.34 16 21 N -0.55 -5.39 6.07 -9.12 -0.06 -5.44 16 22 H 0.41 2.88 8.96 -40.82 -0.37 2.51 16 23 C 0.11 1.22 5.94 -2.53 -0.02 1.20 16 24 C 0.11 1.56 4.05 -65.78 -0.27 1.30 16 25 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 26 N -0.27 -4.58 2.34 -52.68 -0.12 -4.70 16 27 C -0.04 -0.70 10.01 -17.05 -0.17 -0.87 16 28 C -0.06 -0.97 12.05 -17.74 -0.21 -1.19 16 29 N -0.27 -5.57 12.41 30.24 0.38 -5.20 16 30 N -0.07 -1.36 12.46 60.35 0.75 -0.61 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.39 9.93 6.14 -40.82 -0.25 9.68 16 33 H 0.08 1.21 8.03 -51.93 -0.42 0.80 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 39 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 42 H 0.18 2.45 6.78 -52.49 -0.36 2.09 16 43 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -34.79 364.70 -6.88 -41.67 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.57 Total: 14.42 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.92 Total: -3.18 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: 1.05 Total: -66.01 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.09 Total: -8.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.79 -6.88 -41.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070331381.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.135 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds