Wall clock time and date at job start Tue Mar 31 2020 05:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35041 * 126.39682 * 2 1 4 4 N 1.30507 * 108.69683 * 180.26893 * 3 2 1 5 5 C 1.34122 * 109.25542 * 359.76602 * 4 3 2 6 6 C 1.34669 * 108.02112 * 0.02562 * 5 4 3 7 7 C 1.50708 * 126.58902 * 179.97438 * 6 5 4 8 8 H 1.08998 * 110.30038 * 205.74205 * 7 6 5 9 9 C 1.54389 * 110.33645 * 83.56877 * 7 6 5 10 10 N 1.48153 * 104.61558 * 217.25860 * 9 7 6 11 11 C 1.34767 * 127.84079 * 219.58937 * 10 9 7 12 12 O 1.21579 * 120.00238 * 0.02562 * 11 10 9 13 13 C 1.47713 * 120.00150 * 179.97438 * 11 10 9 14 14 C 1.41505 * 126.51958 * 180.02562 * 13 11 10 15 15 C 1.35362 * 105.50288 * 179.74203 * 14 13 11 16 16 N 1.35029 * 107.22900 * 359.97438 * 15 14 13 17 17 H 0.97002 * 124.88840 * 180.02562 * 16 15 14 18 18 N 1.28472 * 110.23305 * 0.02562 * 16 15 14 19 19 C 1.48146 * 104.31963 * 39.84875 * 10 9 7 20 20 C 1.54285 * 110.34004 * 328.03411 * 7 6 5 21 21 H 1.08998 * 110.34624 * 359.97438 * 20 7 6 22 22 N 1.46506 * 110.33712 * 237.84486 * 20 7 6 23 23 C 1.36930 * 119.99657 * 155.00737 * 22 20 7 24 24 H 1.08002 * 120.00214 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00098 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99598 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00398 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.46662 * 90.00281 * 27 25 23 29 29 H 1.48497 * 109.47362 * 210.00012 * 27 25 23 30 30 H 1.48503 * 109.47121 * 330.00570 * 27 25 23 31 31 H 1.09001 * 109.46737 * 270.12361 * 1 2 3 32 32 H 1.09005 * 109.46963 * 30.11494 * 1 2 3 33 33 H 1.08994 * 109.46890 * 150.11873 * 1 2 3 34 34 H 1.07999 * 125.65302 * 0.02562 * 3 2 1 35 35 H 1.08002 * 125.98687 * 179.97438 * 5 4 3 36 36 H 1.09001 * 110.40546 * 98.48499 * 9 7 6 37 37 H 1.08993 * 110.41225 * 336.04256 * 9 7 6 38 38 H 1.07997 * 127.24741 * 359.73585 * 14 13 11 39 39 H 1.07999 * 126.38515 * 180.02562 * 15 14 13 40 40 H 1.09004 * 110.40737 * 78.93731 * 19 10 9 41 41 H 1.08999 * 110.40721 * 201.36727 * 19 10 9 42 42 H 0.96992 * 120.00049 * 335.00058 * 22 20 7 43 43 H 0.97002 * 119.99967 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 -0.0058 5 6 3.5460 -0.6505 -0.0045 6 6 2.2772 -1.1018 0.0018 7 6 1.8363 -2.5429 0.0048 8 1 0.8430 -2.6354 -0.4344 9 6 1.8412 -3.1024 1.4438 10 7 2.3092 -4.5007 1.2996 11 6 1.8643 -5.5929 1.9517 12 8 0.9720 -5.4903 2.7711 13 6 2.4599 -6.9150 1.6702 14 6 2.1008 -8.1453 2.2699 15 6 2.9045 -9.0737 1.7003 16 7 3.6937 -8.4297 0.8139 17 1 4.3682 -8.8542 0.2608 18 7 3.4228 -7.1739 0.8082 19 6 3.3818 -4.4247 0.2805 20 6 2.8493 -3.4153 -0.7652 21 1 3.6656 -2.8015 -1.1461 22 7 2.1841 -4.1161 -1.8665 23 6 2.9064 -4.5163 -2.9588 24 1 3.9663 -4.3150 -3.0087 25 6 2.2763 -5.1808 -4.0021 26 7 0.9845 -5.4257 -3.9415 27 14 3.2614 -5.7262 -5.4926 28 1 3.7851 -7.0971 -5.2650 29 1 2.3865 -5.7234 -6.6923 30 1 4.3960 -4.7919 -5.7050 31 1 -0.3633 0.0022 1.0277 32 1 -0.3633 0.8890 -0.5156 33 1 -0.3633 -0.8910 -0.5120 34 1 1.9335 2.1144 0.0004 35 1 4.4368 -1.2612 -0.0087 36 1 0.8356 -3.0798 1.8637 37 1 2.5286 -2.5343 2.0702 38 1 1.3447 -8.3091 3.0234 39 1 2.9125 -10.1322 1.9143 40 1 4.3063 -4.0598 0.7281 41 1 3.5401 -5.4008 -0.1782 42 1 1.2322 -4.2966 -1.8218 43 1 0.5442 -5.8903 -4.6703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070625067.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:04 Heat of formation + Delta-G solvation = 140.973023 kcal Electronic energy + Delta-G solvation = -28649.706396 eV Core-core repulsion = 24734.000082 eV Total energy + Delta-G solvation = -3915.706315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44258 -41.94835 -39.33052 -37.28042 -33.93263 -33.85798 -32.40027 -31.49175 -30.67021 -30.43178 -27.79346 -27.37470 -26.85412 -24.86096 -23.54015 -22.27268 -21.57029 -21.45147 -20.37647 -19.24413 -19.01893 -18.07829 -17.42739 -16.66950 -16.57430 -15.69809 -15.61240 -15.29566 -15.14813 -14.54129 -14.28072 -13.63507 -13.58013 -13.51915 -13.46520 -13.24291 -13.06003 -12.93404 -12.72864 -12.66996 -12.14199 -11.90295 -11.59444 -11.27547 -10.88450 -10.80641 -10.66514 -10.29555 -10.13467 -9.81977 -9.75733 -9.70480 -9.37563 -9.27116 -9.08718 -9.05943 -8.37178 -8.06866 -7.00127 -5.81778 -3.11047 1.83567 2.21649 2.27466 2.90170 2.97062 3.36297 3.38179 3.41049 3.44809 3.46178 3.73635 4.51419 4.59747 4.76557 4.80845 4.86613 4.91698 5.02042 5.10646 5.16213 5.34562 5.38463 5.49785 5.55606 5.63731 5.71466 5.76931 5.82172 5.86387 5.95578 5.97265 6.19066 6.29779 6.36877 6.51306 6.61409 6.68917 6.88867 6.98935 7.18030 7.36951 7.66380 7.87065 8.02167 8.27504 8.35104 8.50913 9.46977 10.01484 10.36239 11.40335 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.007739 B = 0.005525 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.266322 B = 5066.815100 C = 7723.273347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.458 5.458 3 C 0.169 3.831 4 N -0.494 5.494 5 C -0.023 4.023 6 C 0.005 3.995 7 C -0.039 4.039 8 H 0.090 0.910 9 C 0.121 3.879 10 N -0.599 5.599 11 C 0.625 3.375 12 O -0.550 6.550 13 C -0.007 4.007 14 C -0.183 4.183 15 C -0.021 4.021 16 N -0.384 5.384 17 H 0.445 0.555 18 N -0.236 5.236 19 C 0.064 3.936 20 C 0.179 3.821 21 H 0.076 0.924 22 N -0.710 5.710 23 C -0.238 4.238 24 H 0.073 0.927 25 C -0.010 4.010 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.201 0.799 35 H 0.169 0.831 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.059 0.941 41 H 0.117 0.883 42 H 0.384 0.616 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 1.350 11.675 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.112 4.112 4 N -0.212 5.212 5 C -0.171 4.171 6 C -0.110 4.110 7 C -0.061 4.061 8 H 0.108 0.892 9 C -0.002 4.002 10 N -0.331 5.331 11 C 0.412 3.588 12 O -0.427 6.427 13 C -0.168 4.168 14 C -0.211 4.211 15 C -0.165 4.165 16 N -0.097 5.097 17 H 0.290 0.710 18 N -0.072 5.072 19 C -0.062 4.062 20 C 0.066 3.934 21 H 0.094 0.906 22 N -0.350 5.350 23 C -0.369 4.369 24 H 0.091 0.909 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.206 1.206 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.217 0.783 35 H 0.186 0.814 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.177 0.823 39 H 0.199 0.801 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.218 0.782 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.597 2.341 11.245 11.776 hybrid contribution -0.835 -1.607 -0.727 1.952 sum 1.762 0.733 10.518 10.689 Atomic orbital electron populations 1.22049 0.76870 1.04950 1.03406 1.45254 1.07505 1.06753 1.54610 1.24800 0.85806 0.93223 1.07416 1.70241 1.19362 1.12136 1.19506 1.21999 0.95846 0.90782 1.08477 1.21007 0.91098 0.88876 1.09983 1.20895 1.01749 0.87415 0.96021 0.89194 1.22272 1.00712 0.81477 0.95757 1.48620 1.37560 1.06217 1.40719 1.16433 0.81283 0.81082 0.79987 1.90749 1.31016 1.85441 1.35533 1.21832 0.99520 0.95367 1.00038 1.21728 1.03823 0.90587 1.04978 1.22875 0.97027 1.00017 0.96592 1.43496 1.30009 1.05069 1.31172 0.71040 1.73733 1.16623 0.97678 1.19184 1.23991 0.88372 1.05008 0.88817 1.21271 0.93468 0.90778 0.87894 0.90580 1.42412 1.08708 1.67180 1.16717 1.19224 0.92573 1.30021 0.95100 0.90918 1.24724 0.95769 1.01436 0.98688 1.69669 1.08274 1.46669 1.33220 0.86222 0.78944 0.78459 0.82748 1.21869 1.21876 1.20625 0.90602 0.89577 0.89268 0.78285 0.81417 0.90301 0.90879 0.82274 0.80123 0.92328 0.86467 0.78225 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 11.01 59.85 0.66 1.32 16 2 N -0.46 -6.02 3.15 -121.36 -0.38 -6.40 16 3 C 0.17 2.22 12.56 -90.37 -1.14 1.09 16 4 N -0.49 -7.98 11.25 -14.67 -0.16 -8.15 16 5 C -0.02 -0.38 10.67 -17.81 -0.19 -0.57 16 6 C 0.01 0.08 5.80 -81.60 -0.47 -0.39 16 7 C -0.04 -0.63 3.10 -90.37 -0.28 -0.91 16 8 H 0.09 1.56 6.69 -51.93 -0.35 1.21 16 9 C 0.12 1.89 6.58 -2.40 -0.02 1.87 16 10 N -0.60 -10.58 3.31 -170.21 -0.56 -11.14 16 11 C 0.62 11.89 7.92 -12.39 -0.10 11.79 16 12 O -0.55 -11.42 17.19 5.30 0.09 -11.33 16 13 C -0.01 -0.12 7.01 -82.76 -0.58 -0.70 16 14 C -0.18 -2.59 10.81 -39.36 -0.43 -3.01 16 15 C -0.02 -0.23 12.02 -17.17 -0.21 -0.43 16 16 N -0.38 -4.66 6.83 30.47 0.21 -4.45 16 17 H 0.45 3.79 8.96 -190.44 -1.71 2.08 16 18 N -0.24 -3.87 9.30 33.42 0.31 -3.56 16 19 C 0.06 1.13 6.44 -2.19 -0.01 1.11 16 20 C 0.18 3.36 3.20 -66.31 -0.21 3.15 16 21 H 0.08 1.45 6.29 -51.93 -0.33 1.12 16 22 N -0.71 -16.87 5.14 -51.86 -0.27 -17.13 16 23 C -0.24 -6.28 9.96 -15.06 -0.15 -6.43 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 27 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.92 7.16 -51.93 -0.37 0.55 16 34 H 0.20 1.78 8.06 -52.49 -0.42 1.35 16 35 H 0.17 2.50 7.41 -52.49 -0.39 2.11 16 36 H 0.08 1.22 7.88 -51.93 -0.41 0.81 16 37 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 38 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 39 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.12 2.32 5.43 -51.93 -0.28 2.04 16 42 H 0.38 9.97 7.56 -40.82 -0.31 9.66 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -35.97 362.67 -9.45 -45.42 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.63 Total: 13.59 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.22 Total: 7.51 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -0.13 Total: -77.47 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.97 -9.45 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070625067.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.392 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds