Wall clock time and date at job start Tue Mar 31 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35040 * 126.39315 * 2 1 4 4 N 1.30495 * 108.70166 * 180.02562 * 3 2 1 5 5 C 1.34130 * 109.25453 * 359.75621 * 4 3 2 6 6 C 1.34668 * 108.01787 * 0.39936 * 5 4 3 7 7 C 1.50707 * 126.58844 * 179.87841 * 6 5 4 8 8 H 1.09002 * 110.77520 * 201.44640 * 7 6 5 9 9 C 1.54320 * 110.72209 * 78.20771 * 7 6 5 10 10 N 1.47020 * 107.27003 * 219.43951 * 9 7 6 11 11 C 1.34777 * 125.64538 * 178.89143 * 10 9 7 12 12 O 1.21603 * 119.99381 * 175.32880 * 11 10 9 13 13 C 1.47430 * 120.00395 * 355.33423 * 11 10 9 14 14 C 1.41289 * 126.41280 * 5.73834 * 13 11 10 15 15 N 1.30449 * 108.02098 * 179.97438 * 14 13 11 16 16 N 1.39929 * 108.89705 * 0.02562 * 15 14 13 17 17 H 0.97004 * 125.75388 * 180.02562 * 16 15 14 18 18 C 1.34263 * 108.49438 * 359.74935 * 16 15 14 19 19 C 1.47427 * 108.70178 * 358.94414 * 10 9 7 20 20 C 1.54901 * 104.83251 * 24.12706 * 19 10 9 21 21 H 1.08991 * 111.04203 * 81.08204 * 20 19 10 22 22 N 1.46502 * 111.00045 * 204.91835 * 20 19 10 23 23 C 1.36937 * 119.99910 * 267.19118 * 22 20 19 24 24 H 1.07998 * 120.00016 * 0.02562 * 23 22 20 25 25 C 1.38811 * 119.99792 * 179.97438 * 23 22 20 26 26 N 1.31612 * 120.00437 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99954 * 179.72571 * 25 23 22 28 28 H 1.48509 * 109.46791 * 59.99935 * 27 25 23 29 29 H 1.48498 * 109.47335 * 180.02562 * 27 25 23 30 30 H 1.48500 * 109.47317 * 300.00630 * 27 25 23 31 31 H 1.09000 * 109.47098 * 269.99538 * 1 2 3 32 32 H 1.08997 * 109.47812 * 30.00270 * 1 2 3 33 33 H 1.09004 * 109.46887 * 150.00104 * 1 2 3 34 34 H 1.08003 * 125.65036 * 0.02562 * 3 2 1 35 35 H 1.07998 * 125.99498 * 180.25208 * 5 4 3 36 36 H 1.09003 * 109.88536 * 338.85965 * 9 7 6 37 37 H 1.09002 * 109.88185 * 100.02599 * 9 7 6 38 38 H 1.08000 * 125.98623 * 359.94555 * 14 13 11 39 39 H 1.07997 * 126.29285 * 180.24045 * 18 16 15 40 40 H 1.09001 * 110.36209 * 265.28271 * 19 10 9 41 41 H 1.08998 * 110.36260 * 142.96799 * 19 10 9 42 42 H 0.97001 * 119.99987 * 87.20130 * 22 20 19 43 43 H 0.96998 * 120.00610 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2662 1.0870 0.0000 4 7 3.5095 0.6905 -0.0006 5 6 3.5461 -0.6503 0.0045 6 6 2.2773 -1.1017 -0.0007 7 6 1.8365 -2.5429 -0.0004 8 1 0.8180 -2.6357 -0.3776 9 6 1.9524 -3.1490 1.4140 10 7 2.4510 -4.5235 1.2603 11 6 2.7079 -5.3829 2.2663 12 8 3.0377 -6.5270 2.0191 13 6 2.5891 -4.9361 3.6662 14 6 2.1105 -3.6825 4.1086 15 7 2.1590 -3.6692 5.4122 16 7 2.6638 -4.8952 5.8594 17 1 2.8017 -5.1474 6.7859 18 6 2.9196 -5.6660 4.7902 19 6 2.6245 -4.8055 -0.1763 20 6 2.8121 -3.4155 -0.8334 21 1 3.8388 -3.0664 -0.7243 22 7 2.4173 -3.4439 -2.2439 23 6 3.3531 -3.6940 -3.2119 24 1 4.3821 -3.8706 -2.9355 25 6 2.9789 -3.7215 -4.5484 26 7 1.7249 -3.5068 -4.8853 27 14 4.2568 -4.0550 -5.8695 28 1 4.8688 -5.3886 -5.6407 29 1 3.6068 -4.0305 -7.2044 30 1 5.3110 -3.0105 -5.8134 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9333 2.1144 0.0004 35 1 4.4368 -1.2610 0.0092 36 1 2.6527 -2.5652 2.0114 37 1 0.9735 -3.1612 1.8934 38 1 1.7656 -2.8763 3.4781 39 1 3.3137 -6.6714 4.8065 40 1 1.7379 -5.2977 -0.5760 41 1 3.5077 -5.4237 -0.3374 42 1 1.4931 -3.2855 -2.4922 43 1 1.4634 -3.5256 -5.8191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070626165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:07 Heat of formation + Delta-G solvation = 137.517015 kcal Electronic energy + Delta-G solvation = -28416.268000 eV Core-core repulsion = 24500.411821 eV Total energy + Delta-G solvation = -3915.856179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.91196 -41.51205 -39.40661 -37.32530 -34.24638 -33.82843 -32.40324 -31.80377 -30.74487 -30.36418 -27.84520 -27.56522 -26.82631 -24.50726 -23.31768 -22.55560 -21.77499 -21.42164 -20.24397 -19.56442 -19.25910 -18.22954 -17.42902 -16.76314 -16.14457 -15.94948 -15.46539 -15.25248 -14.92879 -14.68630 -14.41961 -14.32106 -13.70884 -13.53026 -13.39184 -13.20855 -12.94370 -12.88095 -12.71378 -12.65525 -12.46876 -12.16675 -11.57995 -11.39912 -11.32675 -10.86510 -10.80890 -10.48789 -10.14385 -10.07039 -9.82717 -9.70838 -9.65006 -9.32229 -9.04745 -9.01681 -8.36282 -8.00809 -7.09380 -5.84379 -3.14762 1.38252 2.03201 2.26412 2.48275 2.94960 3.21220 3.44147 3.47277 3.48195 3.49702 3.51639 4.41631 4.53083 4.61593 4.72322 4.78233 4.83005 4.88725 4.92102 5.08527 5.11629 5.18250 5.30225 5.35762 5.42761 5.50760 5.53960 5.67125 5.79504 5.83288 5.97578 6.08629 6.12989 6.24504 6.44323 6.57159 6.60540 6.82432 6.83459 7.03688 7.25117 7.42111 7.66169 7.76181 8.31880 8.34972 8.41228 9.44995 9.95201 10.30013 11.37576 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.010389 B = 0.004197 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.583268 B = 6670.464721 C = 8637.343429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.458 5.458 3 C 0.171 3.829 4 N -0.494 5.494 5 C -0.014 4.014 6 C 0.006 3.994 7 C -0.039 4.039 8 H 0.091 0.909 9 C 0.109 3.891 10 N -0.608 5.608 11 C 0.605 3.395 12 O -0.551 6.551 13 C -0.284 4.284 14 C 0.073 3.927 15 N -0.299 5.299 16 N -0.466 5.466 17 H 0.443 0.557 18 C 0.130 3.870 19 C 0.083 3.917 20 C 0.187 3.813 21 H 0.076 0.924 22 N -0.705 5.705 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.006 4.006 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.200 0.800 35 H 0.166 0.834 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.198 0.802 39 H 0.192 0.808 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 3.447 19.692 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.142 5.142 3 C -0.110 4.110 4 N -0.212 5.212 5 C -0.162 4.162 6 C -0.109 4.109 7 C -0.060 4.060 8 H 0.109 0.891 9 C -0.015 4.015 10 N -0.341 5.341 11 C 0.395 3.605 12 O -0.430 6.430 13 C -0.298 4.298 14 C -0.115 4.115 15 N -0.120 5.120 16 N -0.172 5.172 17 H 0.287 0.713 18 C -0.023 4.023 19 C -0.042 4.042 20 C 0.073 3.927 21 H 0.094 0.906 22 N -0.344 5.344 23 C -0.376 4.376 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.579 5.579 27 Si 0.738 3.262 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.211 1.211 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.216 0.784 35 H 0.183 0.817 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.215 0.785 39 H 0.208 0.792 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.220 0.780 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.559 4.004 20.478 21.167 hybrid contribution -0.328 -1.150 -1.216 1.706 sum -3.888 2.854 19.262 19.856 Atomic orbital electron populations 1.22020 0.77067 1.04993 1.03094 1.45210 1.07335 1.06741 1.54877 1.24780 0.85816 0.93182 1.07270 1.70241 1.19337 1.12170 1.19405 1.21954 0.95842 0.90735 1.07639 1.20746 0.91072 0.88493 1.10562 1.20939 1.01869 0.88066 0.95134 0.89121 1.22297 0.98810 0.83212 0.97157 1.48180 1.65177 1.13311 1.07412 1.16837 0.76852 0.84025 0.82829 1.90775 1.49564 1.18101 1.84590 1.20355 1.18424 0.96891 0.94177 1.24777 0.97125 0.97551 0.92040 1.77171 1.20600 1.01130 1.13138 1.46240 1.50283 1.11640 1.09006 0.71252 1.23035 0.95691 0.97422 0.86176 1.23452 1.02298 1.01329 0.77110 1.21351 0.96365 0.89758 0.85195 0.90590 1.42209 1.09636 1.84085 0.98429 1.19191 0.90734 1.41225 0.86473 0.90857 1.24724 0.96284 1.02039 0.97174 1.69633 1.15424 1.55834 1.16981 0.86265 0.80585 0.78248 0.81100 1.21035 1.21719 1.21081 0.90774 0.89600 0.89398 0.78367 0.81685 0.90622 0.91411 0.78546 0.79154 0.91219 0.90459 0.78027 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 11.00 59.85 0.66 1.26 16 2 N -0.46 -5.84 3.15 -121.36 -0.38 -6.22 16 3 C 0.17 2.30 12.56 -90.38 -1.14 1.16 16 4 N -0.49 -8.30 11.25 -14.67 -0.17 -8.47 16 5 C -0.01 -0.23 11.02 -17.81 -0.20 -0.43 16 6 C 0.01 0.09 5.80 -81.60 -0.47 -0.39 16 7 C -0.04 -0.55 2.89 -89.94 -0.26 -0.81 16 8 H 0.09 1.28 6.97 -51.93 -0.36 0.92 16 9 C 0.11 1.33 4.57 -3.07 -0.01 1.32 16 10 N -0.61 -9.10 3.33 -171.79 -0.57 -9.67 16 11 C 0.61 9.47 7.84 -12.52 -0.10 9.37 16 12 O -0.55 -10.44 17.20 5.28 0.09 -10.35 16 13 C -0.28 -3.52 6.09 -105.07 -0.64 -4.16 16 14 C 0.07 0.81 10.44 -16.98 -0.18 0.63 16 15 N -0.30 -3.31 12.63 30.86 0.39 -2.92 16 16 N -0.47 -3.84 7.29 30.85 0.22 -3.62 16 17 H 0.44 1.95 8.96 -182.72 -1.64 0.31 16 18 C 0.13 1.23 11.83 -16.56 -0.20 1.04 16 19 C 0.08 1.47 6.58 -2.53 -0.02 1.45 16 20 C 0.19 3.38 3.06 -65.79 -0.20 3.18 16 21 H 0.08 1.43 6.55 -51.93 -0.34 1.09 16 22 N -0.70 -16.23 5.24 -51.36 -0.27 -16.50 16 23 C -0.25 -6.48 9.96 -15.06 -0.15 -6.63 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 26 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 27 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.79 7.13 -51.93 -0.37 0.42 16 34 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.17 2.69 7.16 -52.49 -0.38 2.32 16 36 H 0.08 0.87 6.41 -51.93 -0.33 0.54 16 37 H 0.07 0.68 7.10 -51.93 -0.37 0.31 16 38 H 0.20 1.87 4.52 -52.49 -0.24 1.63 16 39 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 42 H 0.39 9.42 7.76 -40.82 -0.32 9.10 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -35.92 360.50 -8.97 -44.88 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.42 Total: 9.93 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -2.99 Total: 6.75 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -0.05 Total: -73.66 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.92 -8.97 -44.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070626165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.401 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds