Wall clock time and date at job start Tue Mar 31 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35044 * 126.39643 * 2 1 4 4 N 1.30498 * 108.70220 * 179.97438 * 3 2 1 5 5 C 1.34135 * 109.25321 * 359.75552 * 4 3 2 6 6 C 1.34672 * 108.01919 * 0.39394 * 5 4 3 7 7 C 1.50694 * 126.59068 * 179.87385 * 6 5 4 8 8 H 1.08997 * 110.38828 * 205.47040 * 7 6 5 9 9 C 1.54389 * 110.34232 * 83.23685 * 7 6 5 10 10 N 1.48146 * 104.71947 * 217.20514 * 9 7 6 11 11 C 1.34785 * 127.83657 * 219.64948 * 10 9 7 12 12 O 1.21611 * 119.99809 * 359.97438 * 11 10 9 13 13 C 1.47399 * 120.00142 * 179.97438 * 11 10 9 14 14 N 1.31615 * 125.86193 * 0.02902 * 13 11 10 15 15 C 1.33100 * 109.09405 * 179.97438 * 14 13 11 16 16 C 1.35563 * 108.35152 * 359.97438 * 15 14 13 17 17 N 1.35398 * 107.15822 * 359.77411 * 16 15 14 18 18 H 0.97002 * 126.43776 * 180.23952 * 17 16 15 19 19 C 1.48427 * 104.18376 * 39.57151 * 10 9 7 20 20 C 1.54289 * 110.34339 * 327.69856 * 7 6 5 21 21 H 1.08999 * 110.34364 * 359.89543 * 20 7 6 22 22 N 1.46498 * 110.34572 * 237.73899 * 20 7 6 23 23 C 1.36932 * 120.00297 * 154.99650 * 22 20 7 24 24 H 1.08005 * 119.99727 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00247 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99754 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99833 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47045 * 60.00590 * 27 25 23 29 29 H 1.48501 * 109.46603 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47174 * 300.00356 * 27 25 23 31 31 H 1.08999 * 109.47425 * 270.00462 * 1 2 3 32 32 H 1.09000 * 109.46710 * 30.00613 * 1 2 3 33 33 H 1.08996 * 109.46559 * 150.00045 * 1 2 3 34 34 H 1.08002 * 125.65266 * 359.97438 * 3 2 1 35 35 H 1.08000 * 125.98862 * 180.24787 * 5 4 3 36 36 H 1.09002 * 110.40709 * 336.04813 * 9 7 6 37 37 H 1.09002 * 110.40588 * 98.36174 * 9 7 6 38 38 H 1.08004 * 125.82514 * 179.97438 * 15 14 13 39 39 H 1.07999 * 126.42278 * 180.02562 * 16 15 14 40 40 H 1.09004 * 110.39413 * 201.64938 * 19 10 9 41 41 H 1.09006 * 110.49084 * 79.28969 * 19 10 9 42 42 H 0.97007 * 119.99847 * 335.00673 * 22 20 7 43 43 H 0.97002 * 119.99856 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6904 0.0006 5 6 3.5461 -0.6505 0.0063 6 6 2.2772 -1.1018 0.0007 7 6 1.8364 -2.5428 0.0014 8 1 0.8455 -2.6369 -0.4430 9 6 1.8349 -3.1029 1.4401 10 7 2.3021 -4.5018 1.2999 11 6 1.8521 -5.5929 1.9507 12 8 0.9557 -5.4880 2.7658 13 6 2.4463 -6.9132 1.6745 14 7 3.4171 -7.1583 0.8202 15 6 3.6938 -8.4601 0.8373 16 6 2.8711 -9.0596 1.7327 17 7 2.0885 -8.0920 2.2662 18 1 1.4013 -8.2131 2.9400 19 6 3.3763 -4.4258 0.2784 20 6 2.8527 -3.4150 -0.7646 21 1 3.6699 -2.8009 -1.1430 22 7 2.1920 -4.1175 -1.8674 23 6 2.9182 -4.5179 -2.9571 24 1 3.9782 -4.3162 -3.0033 25 6 2.2922 -5.1840 -4.0017 26 7 1.0005 -5.4302 -3.9451 27 14 3.2831 -5.7309 -5.4879 28 1 4.3505 -6.6675 -5.0536 29 1 2.3877 -6.4143 -6.4555 30 1 3.8987 -4.5451 -6.1360 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3632 -0.8900 -0.5138 34 1 1.9335 2.1145 -0.0004 35 1 4.4369 -1.2611 0.0119 36 1 2.5196 -2.5348 2.0698 37 1 0.8278 -3.0784 1.8564 38 1 4.4454 -8.9546 0.2398 39 1 2.8475 -10.1111 1.9779 40 1 3.5319 -5.4013 -0.1825 41 1 4.3029 -4.0653 0.7253 42 1 1.2399 -4.2988 -1.8258 43 1 0.5630 -5.8953 -4.6753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070645344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:10 Heat of formation + Delta-G solvation = 126.681417 kcal Electronic energy + Delta-G solvation = -28663.035372 eV Core-core repulsion = 24746.709327 eV Total energy + Delta-G solvation = -3916.326045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.08812 -41.94601 -39.37382 -37.39679 -33.95884 -33.88653 -32.79872 -32.03315 -30.60525 -29.74166 -27.68519 -27.37404 -26.86886 -24.74142 -23.43598 -22.12384 -21.59360 -21.37330 -20.36037 -19.89527 -19.23642 -17.84307 -17.32600 -16.66167 -16.39889 -15.73640 -15.63955 -15.26049 -15.06044 -14.48025 -14.23128 -13.91966 -13.67469 -13.55743 -13.49986 -13.33029 -13.14503 -13.04335 -12.79780 -12.68584 -12.16523 -11.93107 -11.58096 -11.18614 -10.79927 -10.75940 -10.68910 -10.16711 -10.14505 -10.04252 -9.74732 -9.71401 -9.68540 -9.38817 -9.02545 -8.63249 -8.35034 -8.08520 -6.96342 -5.76598 -3.05708 1.50346 2.19617 2.61573 2.76676 2.92316 3.37969 3.46305 3.50396 3.51335 3.55228 3.64257 4.41045 4.56845 4.74722 4.79364 4.85375 4.92084 5.05783 5.08830 5.14045 5.32048 5.35765 5.45825 5.47339 5.58842 5.61017 5.74974 5.81547 5.89919 5.93679 6.01043 6.16522 6.32049 6.40400 6.59316 6.59961 6.74263 6.94222 7.08418 7.24876 7.35560 7.70796 7.73461 7.89996 8.26428 8.31180 8.40129 9.52293 10.05511 10.40064 11.45646 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.007697 B = 0.005549 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3636.897991 B = 5044.564130 C = 7726.193348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.458 5.458 3 C 0.170 3.830 4 N -0.494 5.494 5 C -0.022 4.022 6 C 0.005 3.995 7 C -0.039 4.039 8 H 0.090 0.910 9 C 0.122 3.878 10 N -0.586 5.586 11 C 0.627 3.373 12 O -0.562 6.562 13 C 0.154 3.846 14 N -0.422 5.422 15 C -0.026 4.026 16 C -0.032 4.032 17 N -0.529 5.529 18 H 0.426 0.574 19 C 0.060 3.940 20 C 0.178 3.822 21 H 0.078 0.922 22 N -0.710 5.710 23 C -0.237 4.237 24 H 0.073 0.927 25 C -0.009 4.009 26 N -0.933 5.933 27 Si 0.906 3.094 28 H -0.284 1.284 29 H -0.293 1.293 30 H -0.286 1.286 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.170 0.830 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.130 0.870 41 H 0.061 0.939 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 2.105 13.194 13.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.142 5.142 3 C -0.112 4.112 4 N -0.212 5.212 5 C -0.170 4.170 6 C -0.111 4.111 7 C -0.061 4.061 8 H 0.109 0.891 9 C -0.001 4.001 10 N -0.317 5.317 11 C 0.414 3.586 12 O -0.441 6.441 13 C -0.107 4.107 14 N -0.143 5.143 15 C -0.179 4.179 16 C -0.171 4.171 17 N -0.131 5.131 18 H 0.265 0.735 19 C -0.065 4.065 20 C 0.065 3.935 21 H 0.096 0.904 22 N -0.350 5.350 23 C -0.368 4.368 24 H 0.091 0.909 25 C -0.205 4.205 26 N -0.581 5.581 27 Si 0.737 3.263 28 H -0.211 1.211 29 H -0.219 1.219 30 H -0.213 1.213 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.217 0.783 35 H 0.187 0.813 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.194 0.806 39 H 0.201 0.799 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.524 3.209 13.010 13.410 hybrid contribution -1.367 -1.719 -0.195 2.205 sum -0.843 1.490 12.815 12.928 Atomic orbital electron populations 1.22045 0.76900 1.04964 1.03363 1.45257 1.07486 1.06762 1.54653 1.24805 0.85810 0.93220 1.07352 1.70250 1.19335 1.12141 1.19482 1.22024 0.95859 0.90779 1.08314 1.20980 0.91113 0.88806 1.10153 1.20905 1.01919 0.87537 0.95754 0.89142 1.22326 1.00754 0.80870 0.96121 1.48448 1.37215 1.05789 1.40243 1.15926 0.81364 0.80907 0.80436 1.90791 1.31300 1.85732 1.36286 1.22515 1.00316 0.88522 0.99326 1.70330 1.11587 1.16740 1.15685 1.22585 1.03170 0.90242 1.01868 1.22906 0.97335 0.95338 1.01481 1.42908 1.30255 1.07175 1.32768 0.73473 1.24165 0.87894 1.05987 0.88452 1.21226 0.93496 0.90776 0.87976 0.90389 1.42405 1.08654 1.67040 1.16889 1.19180 0.92530 1.30015 0.95113 0.90889 1.24706 0.95767 1.01296 0.98737 1.69653 1.08445 1.46753 1.33210 0.86289 0.78933 0.78430 0.82682 1.21078 1.21891 1.21268 0.90640 0.89565 0.89285 0.78280 0.81328 0.90576 0.90286 0.80574 0.79924 0.85195 0.92107 0.78317 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 11.01 59.85 0.66 1.30 16 2 N -0.46 -5.90 3.15 -121.37 -0.38 -6.29 16 3 C 0.17 2.20 12.56 -90.38 -1.14 1.06 16 4 N -0.49 -7.89 11.25 -14.66 -0.16 -8.05 16 5 C -0.02 -0.35 10.67 -17.81 -0.19 -0.54 16 6 C 0.00 0.07 5.80 -81.60 -0.47 -0.40 16 7 C -0.04 -0.63 3.10 -90.37 -0.28 -0.91 16 8 H 0.09 1.53 6.70 -51.93 -0.35 1.19 16 9 C 0.12 1.84 6.57 -2.41 -0.02 1.82 16 10 N -0.59 -10.08 3.33 -170.33 -0.57 -10.65 16 11 C 0.63 11.37 7.91 -12.53 -0.10 11.27 16 12 O -0.56 -10.81 17.36 5.27 0.09 -10.71 16 13 C 0.15 2.61 7.84 -154.53 -1.21 1.39 16 14 N -0.42 -7.38 8.26 -11.26 -0.09 -7.47 16 15 C -0.03 -0.36 11.85 -17.96 -0.21 -0.57 16 16 C -0.03 -0.36 12.00 -16.93 -0.20 -0.56 16 17 N -0.53 -6.83 6.14 -10.78 -0.07 -6.90 16 18 H 0.43 4.41 8.96 -40.82 -0.37 4.05 16 19 C 0.06 1.06 6.40 -2.25 -0.01 1.05 16 20 C 0.18 3.34 3.20 -66.53 -0.21 3.12 16 21 H 0.08 1.48 6.31 -51.93 -0.33 1.15 16 22 N -0.71 -16.92 5.11 -52.07 -0.27 -17.19 16 23 C -0.24 -6.34 9.96 -15.06 -0.15 -6.49 16 24 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 27 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.90 7.16 -51.93 -0.37 0.52 16 34 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 35 H 0.17 2.48 7.43 -52.49 -0.39 2.09 16 36 H 0.08 1.06 7.85 -51.93 -0.41 0.65 16 37 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 38 H 0.18 2.01 8.06 -52.48 -0.42 1.59 16 39 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.13 2.67 5.43 -51.93 -0.28 2.39 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.38 9.94 7.56 -40.82 -0.31 9.63 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -35.51 362.95 -9.21 -44.71 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.29 Total: 15.63 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: -3.64 Total: 11.20 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -0.82 Total: -83.45 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.51 -9.21 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070645344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.395 kcal (2) G-P(sol) polarization free energy of solvation -35.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds