Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99898 * 2 1 4 4 H 1.48504 * 109.46755 * 239.99908 * 3 2 1 5 5 H 1.48503 * 109.46922 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47269 * 119.99699 * 3 2 1 7 7 C 1.38816 * 120.00118 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99890 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99704 * 0.02562 * 7 2 1 10 10 C 1.46584 * 125.30301 * 179.97438 * 9 7 2 11 11 C 1.53266 * 108.15944 * 177.88696 * 10 9 7 12 12 H 1.08999 * 113.08952 * 222.46376 * 11 10 9 13 13 C 1.54804 * 109.74476 * 95.76108 * 11 10 9 14 14 C 1.55155 * 101.40177 * 212.12738 * 13 11 10 15 15 N 1.47343 * 104.78415 * 37.52569 * 14 13 11 16 16 C 1.34774 * 125.53126 * 156.48667 * 15 14 13 17 17 O 1.21284 * 120.00592 * 184.75544 * 16 15 14 18 18 C 1.50706 * 119.99714 * 4.75830 * 16 15 14 19 19 H 1.08998 * 109.71359 * 334.86848 * 18 16 15 20 20 C 1.53394 * 109.75320 * 95.49324 * 18 16 15 21 21 C 1.53120 * 109.73779 * 170.24142 * 20 18 16 22 22 C 1.53369 * 109.70018 * 288.29661 * 21 20 18 23 23 C 1.50952 * 108.24331 * 50.62944 * 22 21 20 24 24 N 1.30123 * 128.28479 * 163.32526 * 23 22 21 25 25 N 1.40321 * 108.12184 * 180.14048 * 24 23 22 26 26 H 0.97000 * 126.00397 * 179.97438 * 25 24 23 27 27 C 1.35202 * 107.99113 * 359.96627 * 25 24 23 28 28 C 1.34577 * 107.61608 * 359.95702 * 27 25 24 29 29 C 1.47221 * 108.94199 * 336.21900 * 15 14 13 30 30 H 1.08997 * 112.28557 * 236.47519 * 29 15 14 31 31 C 1.47545 * 125.06915 * 359.52768 * 9 7 2 32 32 H 0.97002 * 120.00378 * 0.02562 * 1 2 3 33 33 H 1.09006 * 109.73435 * 58.20409 * 10 9 7 34 34 H 1.08999 * 109.71930 * 297.56683 * 10 9 7 35 35 H 1.09002 * 111.01996 * 330.35087 * 13 11 10 36 36 H 1.09005 * 111.01695 * 94.24087 * 13 11 10 37 37 H 1.08999 * 110.48570 * 278.66435 * 14 13 11 38 38 H 1.08994 * 110.32619 * 156.30339 * 14 13 11 39 39 H 1.08999 * 109.43198 * 290.31398 * 20 18 16 40 40 H 1.08995 * 109.42647 * 50.16192 * 20 18 16 41 41 H 1.09001 * 109.48350 * 168.20674 * 21 20 18 42 42 H 1.09004 * 109.41921 * 48.34814 * 21 20 18 43 43 H 1.09002 * 109.71346 * 290.93223 * 22 21 20 44 44 H 1.09000 * 109.71697 * 170.33312 * 22 21 20 45 45 H 1.07997 * 126.19032 * 179.91293 * 27 25 24 46 46 H 1.09002 * 109.81200 * 78.49399 * 31 9 7 47 47 H 1.08990 * 110.48174 * 316.90731 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9380 -3.7199 0.0005 11 6 0.8153 -4.7619 0.0542 12 1 1.0278 -5.5844 0.7372 13 6 0.4831 -5.2470 -1.3778 14 6 -1.0358 -5.5398 -1.2578 15 7 -1.5557 -4.4762 -0.3806 16 6 -2.8328 -4.0474 -0.3418 17 8 -3.1349 -3.1045 0.3587 18 6 -3.8854 -4.7395 -1.1689 19 1 -3.4192 -5.2242 -2.0267 20 6 -4.6109 -5.7864 -0.3142 21 6 -5.8320 -6.3159 -1.0711 22 6 -6.9184 -5.2344 -1.1209 23 6 -6.2898 -3.9558 -1.6196 24 7 -6.8816 -2.8961 -2.0886 25 7 -5.8938 -1.9601 -2.4309 26 1 -6.0486 -1.0787 -2.8053 27 6 -4.6883 -2.5025 -2.1470 28 6 -4.9031 -3.7322 -1.6442 29 6 -0.4551 -3.9624 0.4513 30 1 -0.6746 -4.0326 1.5166 31 6 -0.1441 -2.5184 0.0100 32 1 -0.4851 0.8400 -0.0004 33 1 2.5829 -3.8284 0.8726 34 1 2.5230 -3.8556 -0.9090 35 1 0.6771 -4.4638 -2.1107 36 1 1.0364 -6.1540 -1.6215 37 1 -1.2012 -6.5182 -0.8066 38 1 -1.5099 -5.4884 -2.2379 39 1 -3.9324 -6.6117 -0.0984 40 1 -4.9342 -5.3298 0.6212 41 1 -6.2213 -7.1975 -0.5619 42 1 -5.5407 -6.5841 -2.0867 43 1 -7.3276 -5.0781 -0.1228 44 1 -7.7133 -5.5427 -1.8000 45 1 -3.7269 -2.0340 -2.2973 46 1 -0.5369 -2.3434 -0.9916 47 1 -0.5851 -1.8122 0.7132 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075791952.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = 47.115507 kcal Electronic energy + Delta-G solvation = -29586.809938 eV Core-core repulsion = 25770.573999 eV Total energy + Delta-G solvation = -3816.235939 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.58739 -41.33278 -39.36616 -37.18550 -36.56569 -34.12347 -33.22366 -32.13814 -31.47067 -30.47067 -29.54076 -28.24901 -26.55170 -25.72980 -23.90865 -22.83592 -22.51129 -22.08337 -20.88348 -19.94481 -19.70861 -18.91776 -18.57113 -18.05055 -17.16491 -16.53091 -16.35027 -16.01060 -15.79393 -15.52654 -15.16993 -15.02332 -14.90484 -14.50225 -14.25235 -14.07655 -13.78654 -13.68983 -13.42833 -13.37087 -13.19606 -13.02141 -12.91166 -12.73981 -12.53759 -12.25635 -12.22362 -12.08266 -11.86281 -11.70889 -11.63857 -11.46030 -11.38008 -11.28331 -10.74103 -10.59442 -10.36906 -9.51866 -9.45149 -8.91026 -7.79789 -5.24243 0.88969 1.40700 1.45021 1.51435 1.63026 1.76331 1.92636 2.17994 2.47268 3.30633 3.38474 3.50964 3.67467 3.76809 3.80524 3.94230 3.96482 4.06527 4.19353 4.31338 4.36728 4.39408 4.47843 4.48995 4.54068 4.57744 4.62040 4.72602 4.80248 4.90901 4.93728 4.98605 5.03785 5.13549 5.15696 5.19477 5.23800 5.29417 5.31195 5.46964 5.49323 5.52981 5.62867 5.70770 5.83701 6.23355 6.34016 6.67345 6.73724 7.06238 7.35970 7.77915 8.39056 9.22116 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.004002 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.481948 B = 6994.560150 C = 8552.671458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.087 0.913 9 N -0.628 5.628 10 C 0.137 3.863 11 C -0.092 4.092 12 H 0.130 0.870 13 C -0.115 4.115 14 C 0.098 3.902 15 N -0.609 5.609 16 C 0.521 3.479 17 O -0.583 6.583 18 C -0.011 4.011 19 H 0.119 0.881 20 C -0.102 4.102 21 C -0.101 4.101 22 C -0.042 4.042 23 C 0.083 3.917 24 N -0.318 5.318 25 N -0.482 5.482 26 H 0.448 0.552 27 C 0.071 3.929 28 C -0.235 4.235 29 C 0.117 3.883 30 H 0.064 0.936 31 C 0.192 3.808 32 H 0.241 0.759 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.049 0.951 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.161 0.839 46 H -0.020 1.020 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -20.348 -5.970 22.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.200 1.200 7 C -0.372 4.372 8 H 0.105 0.895 9 N -0.355 5.355 10 C 0.012 3.988 11 C -0.111 4.111 12 H 0.148 0.852 13 C -0.153 4.153 14 C -0.023 4.023 15 N -0.343 5.343 16 C 0.311 3.689 17 O -0.462 6.462 18 C -0.033 4.033 19 H 0.137 0.863 20 C -0.140 4.140 21 C -0.139 4.139 22 C -0.081 4.081 23 C -0.085 4.085 24 N -0.140 5.140 25 N -0.191 5.191 26 H 0.293 0.707 27 C -0.075 4.075 28 C -0.247 4.247 29 C 0.012 3.988 30 H 0.082 0.918 31 C 0.066 3.934 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.144 0.856 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.066 0.934 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.119 0.881 45 H 0.178 0.822 46 H -0.002 1.002 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.024 -19.076 -5.903 22.343 hybrid contribution 1.266 2.559 0.182 2.861 sum -8.759 -16.517 -5.722 19.551 Atomic orbital electron populations 1.70280 1.06455 1.24734 1.58267 1.25732 0.96460 1.01329 1.02697 0.85146 0.77047 0.78629 0.78499 1.19858 1.22580 1.19974 1.19466 0.91128 0.83745 1.42880 0.89531 1.44742 1.02191 1.01518 1.87014 1.21247 0.94904 0.84006 0.98601 1.22902 0.91716 0.97211 0.99306 0.85242 1.22857 0.95459 1.02530 0.94438 1.22747 0.93901 0.90902 0.94770 1.48718 1.07056 1.38513 1.39978 1.21006 0.82357 0.83048 0.82514 1.90735 1.81325 1.29834 1.44260 1.19764 0.91015 0.94350 0.98217 0.86299 1.21551 0.98198 0.96773 0.97456 1.21566 0.92887 0.97334 1.02081 1.20377 0.98597 0.87398 1.01710 1.22906 0.92059 0.96214 0.97352 1.76867 1.14100 1.00328 1.22724 1.46280 1.03007 1.16805 1.53004 0.70667 1.22150 0.91081 0.95242 0.99074 1.19748 0.94815 0.97177 1.12958 1.22606 0.87158 0.95033 0.94037 0.91769 1.21257 0.83488 0.92579 0.96107 0.94963 0.95434 0.94613 0.93181 0.85634 0.87233 0.88981 0.88283 0.93362 0.87450 0.89848 0.89601 0.88134 0.82180 1.00155 0.94802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.34 10.16 21.65 0.22 -61.12 16 2 C -0.07 -4.16 5.48 84.86 0.47 -3.69 16 3 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.24 -14.09 10.25 84.03 0.86 -13.23 16 8 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 9 N -0.63 -33.32 3.40 -696.35 -2.37 -35.68 16 10 C 0.14 5.38 6.66 86.45 0.58 5.95 16 11 C -0.09 -2.73 3.91 -9.31 -0.04 -2.77 16 12 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 13 C -0.12 -2.61 6.26 31.95 0.20 -2.41 16 14 C 0.10 1.96 6.54 86.96 0.57 2.52 16 15 N -0.61 -19.70 2.85 -783.36 -2.23 -21.94 16 16 C 0.52 18.59 6.43 87.66 0.56 19.16 16 17 O -0.58 -28.07 16.11 -3.04 -0.05 -28.12 16 18 C -0.01 -0.28 2.58 -12.10 -0.03 -0.32 16 19 H 0.12 2.28 6.38 -2.39 -0.02 2.26 16 20 C -0.10 -1.88 5.17 30.77 0.16 -1.72 16 21 C -0.10 -1.26 5.87 30.76 0.18 -1.08 16 22 C -0.04 -0.74 6.31 30.05 0.19 -0.55 16 23 C 0.08 2.28 7.10 43.44 0.31 2.59 16 24 N -0.32 -9.66 12.68 -47.14 -0.60 -10.26 16 25 N -0.48 -14.10 7.37 -57.88 -0.43 -14.53 16 26 H 0.45 10.43 8.96 -213.18 -1.91 8.52 16 27 C 0.07 2.32 11.17 83.33 0.93 3.25 16 28 C -0.24 -7.02 5.05 -20.10 -0.10 -7.12 16 29 C 0.12 4.60 3.87 46.02 0.18 4.78 16 30 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 31 C 0.19 10.25 4.69 86.57 0.41 10.66 16 32 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.04 1.34 7.74 -2.39 -0.02 1.32 16 35 H 0.05 1.48 7.88 -2.39 -0.02 1.46 16 36 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.51 6.88 -2.39 -0.02 1.50 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.16 5.55 8.06 -2.91 -0.02 5.53 16 46 H -0.02 -1.17 7.94 -2.39 -0.02 -1.19 16 47 H 0.03 2.20 6.29 -2.39 -0.02 2.19 16 Total: -1.00 -87.76 366.52 1.07 -86.69 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.92 Total: 19.20 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 5.42 Total: 16.03 kcal Atomic # 7 Polarization: -138.12 SS G_CDS: -5.40 Total: -143.52 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.12 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -87.76 1.07 -86.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075791952.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.805 kcal (2) G-P(sol) polarization free energy of solvation -87.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds