Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99887 * 2 1 4 4 H 1.48506 * 109.46906 * 274.99066 * 3 2 1 5 5 H 1.48501 * 109.47287 * 34.99035 * 3 2 1 6 6 H 1.48501 * 109.46932 * 154.99174 * 3 2 1 7 7 C 1.38805 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00611 * 173.82983 * 7 2 1 9 9 N 1.36945 * 119.99974 * 353.82729 * 7 2 1 10 10 C 1.46694 * 125.32355 * 184.98861 * 9 7 2 11 11 C 1.54048 * 106.83088 * 161.80192 * 10 9 7 12 12 H 1.08996 * 113.43461 * 262.67901 * 11 10 9 13 13 C 1.55123 * 108.26242 * 135.80730 * 11 10 9 14 14 C 1.54850 * 101.77669 * 285.19201 * 13 11 10 15 15 N 1.47398 * 104.81342 * 322.81150 * 14 13 11 16 16 C 1.34779 * 125.59032 * 204.61535 * 15 14 13 17 17 O 1.21284 * 119.99712 * 184.73718 * 16 15 14 18 18 C 1.50700 * 119.99991 * 4.73318 * 16 15 14 19 19 H 1.08997 * 109.74786 * 24.75246 * 18 16 15 20 20 C 1.53389 * 109.71800 * 264.11907 * 18 16 15 21 21 C 1.53023 * 109.71370 * 189.78198 * 20 18 16 22 22 C 1.53380 * 109.74529 * 71.74169 * 21 20 18 23 23 C 1.50951 * 108.20274 * 309.34852 * 22 21 20 24 24 N 1.30124 * 128.28743 * 196.81500 * 23 22 21 25 25 N 1.40309 * 108.12464 * 179.72793 * 24 23 22 26 26 H 0.97004 * 126.00654 * 179.76541 * 25 24 23 27 27 C 1.35198 * 107.99360 * 0.02562 * 25 24 23 28 28 C 1.34570 * 107.61689 * 0.03584 * 27 25 24 29 29 C 1.46730 * 108.81948 * 24.87021 * 15 14 13 30 30 H 1.09002 * 111.33379 * 235.86068 * 29 15 14 31 31 C 1.46635 * 125.32044 * 4.97639 * 9 7 2 32 32 H 0.97008 * 119.99899 * 0.02562 * 1 2 3 33 33 H 1.09003 * 109.98534 * 42.46643 * 10 9 7 34 34 H 1.08997 * 109.99497 * 281.15104 * 10 9 7 35 35 H 1.08988 * 110.96884 * 167.06538 * 13 11 10 36 36 H 1.09006 * 110.96177 * 43.31211 * 13 11 10 37 37 H 1.09005 * 110.36895 * 203.97887 * 14 13 11 38 38 H 1.08998 * 110.46758 * 81.69216 * 14 13 11 39 39 H 1.08993 * 109.43099 * 309.85957 * 20 18 16 40 40 H 1.08996 * 109.42751 * 69.75950 * 20 18 16 41 41 H 1.09000 * 109.42619 * 191.81683 * 21 20 18 42 42 H 1.09001 * 109.43293 * 311.70415 * 21 20 18 43 43 H 1.08995 * 109.70617 * 189.67882 * 22 21 20 44 44 H 1.09000 * 109.73198 * 69.02782 * 22 21 20 45 45 H 1.08005 * 126.19290 * 180.02562 * 27 25 24 46 46 H 1.09006 * 109.75593 * 300.94386 * 31 9 7 47 47 H 1.08998 * 109.75905 * 61.64274 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1074 -1.3948 5 1 1.5044 2.6200 0.8029 6 1 3.5965 1.4121 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 3.0856 -1.2049 -0.1000 9 7 1.3315 -2.3846 0.1286 10 6 1.9504 -3.7092 0.2475 11 6 0.8770 -4.6531 0.8220 12 1 0.9555 -4.7937 1.9000 13 6 0.9186 -5.9810 0.0212 14 6 0.2430 -5.5688 -1.3098 15 7 -0.8240 -4.6311 -0.9162 16 6 -1.9425 -4.3742 -1.6230 17 8 -2.7148 -3.5184 -1.2460 18 6 -2.2333 -5.1502 -2.8817 19 1 -1.7284 -6.1154 -2.8442 20 6 -1.7466 -4.3584 -4.1019 21 6 -2.2539 -5.0222 -5.3839 22 6 -3.7642 -4.7941 -5.5229 23 6 -4.4228 -5.1930 -4.2245 24 7 -5.6801 -5.4437 -4.0019 25 7 -5.8249 -5.7800 -2.6474 26 1 -6.6556 -6.0111 -2.2029 27 6 -4.6043 -5.7197 -2.0692 28 6 -3.7214 -5.3589 -3.0186 29 6 -0.4660 -4.0187 0.3682 30 1 -1.2478 -4.1718 1.1122 31 6 -0.1276 -2.5245 0.1685 32 1 -0.4850 0.8401 -0.0004 33 1 2.8048 -3.6620 0.9228 34 1 2.2695 -4.0610 -0.7335 35 1 0.3449 -6.7586 0.5253 36 1 1.9463 -6.3033 -0.1464 37 1 -0.1825 -6.4413 -1.8055 38 1 0.9606 -5.0739 -1.9641 39 1 -2.1262 -3.3382 -4.0471 40 1 -0.6568 -4.3397 -4.1108 41 1 -1.7415 -4.5898 -6.2433 42 1 -2.0519 -6.0926 -5.3424 43 1 -4.1549 -5.4054 -6.3363 44 1 -3.9602 -3.7414 -5.7263 45 1 -4.3786 -5.9238 -1.0329 46 1 -0.5300 -1.9513 1.0038 47 1 -0.5580 -2.1650 -0.7662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075791953.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = 71.157414 kcal Electronic energy + Delta-G solvation = -29655.316221 eV Core-core repulsion = 25840.122818 eV Total energy + Delta-G solvation = -3815.193403 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55278 -40.04005 -37.93646 -36.17819 -34.73496 -32.46062 -31.86979 -30.79531 -30.51198 -29.03296 -28.31410 -26.36658 -24.89530 -24.60820 -22.67715 -21.84501 -21.38629 -20.49650 -19.58458 -18.82413 -18.34925 -17.51467 -17.09026 -16.59043 -15.74910 -15.09946 -14.85420 -14.84968 -14.37015 -14.17599 -14.10939 -13.73527 -13.41503 -13.25197 -12.97640 -12.81161 -12.62234 -12.39937 -12.14972 -11.98108 -11.84817 -11.52019 -11.29294 -11.11229 -11.05785 -10.94665 -10.82460 -10.71923 -10.43108 -10.34865 -10.20208 -10.10373 -9.81749 -9.67639 -9.35675 -9.19994 -8.52411 -8.39517 -8.07869 -6.76081 -5.64155 -2.99450 1.93727 2.70488 2.85614 3.09671 3.43158 3.48003 3.49095 3.50980 4.39292 4.53063 4.67015 4.73432 4.81147 4.91467 4.96635 5.10053 5.19860 5.21982 5.39624 5.41100 5.46806 5.53226 5.55408 5.58742 5.68092 5.76238 5.78415 5.81727 5.86940 5.89026 5.97147 6.04896 6.07924 6.17771 6.25358 6.33681 6.37138 6.51746 6.61020 6.64827 6.68568 6.91285 7.28689 7.63972 7.68525 7.70420 7.94913 8.06649 8.34483 8.70754 9.28011 9.89348 10.53275 11.45607 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.003800 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.543617 B = 7366.259315 C = 8118.766425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.004 4.004 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.143 3.857 11 C -0.111 4.111 12 H 0.095 0.905 13 C -0.124 4.124 14 C 0.100 3.900 15 N -0.604 5.604 16 C 0.530 3.470 17 O -0.523 6.523 18 C -0.021 4.021 19 H 0.090 0.910 20 C -0.108 4.108 21 C -0.111 4.111 22 C -0.040 4.040 23 C 0.091 3.909 24 N -0.295 5.295 25 N -0.486 5.486 26 H 0.438 0.562 27 C 0.082 3.918 28 C -0.215 4.215 29 C 0.114 3.886 30 H 0.077 0.923 31 C 0.178 3.822 32 H 0.253 0.747 33 H 0.034 0.966 34 H 0.017 0.983 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.171 0.829 46 H 0.050 0.950 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 -17.839 -6.199 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.201 4.201 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.131 4.131 12 H 0.113 0.887 13 C -0.163 4.163 14 C -0.023 4.023 15 N -0.339 5.339 16 C 0.317 3.683 17 O -0.398 6.398 18 C -0.043 4.043 19 H 0.108 0.892 20 C -0.146 4.146 21 C -0.149 4.149 22 C -0.079 4.079 23 C -0.078 4.078 24 N -0.117 5.117 25 N -0.194 5.194 26 H 0.281 0.719 27 C -0.064 4.064 28 C -0.227 4.227 29 C 0.010 3.990 30 H 0.095 0.905 31 C 0.053 3.947 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.189 0.811 46 H 0.068 0.932 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.298 -17.182 -6.540 19.434 hybrid contribution 0.814 0.853 0.849 1.452 sum -5.485 -16.330 -5.692 18.142 Atomic orbital electron populations 1.70015 1.04797 1.25046 1.56078 1.24846 0.95630 0.97651 1.01996 0.86169 0.78669 0.83867 0.77463 1.21704 1.21655 1.20641 1.18991 0.90856 0.82455 1.43977 0.90486 1.44206 1.01494 1.00841 1.86368 1.21290 0.93952 0.86347 0.96722 1.23151 0.95876 0.94411 0.99655 0.88671 1.22753 1.00928 0.97221 0.95383 1.22328 0.90093 0.92366 0.97493 1.48451 1.19792 1.43155 1.22459 1.20057 0.80142 0.83603 0.84453 1.90743 1.47582 1.32070 1.69362 1.19664 0.91774 0.99076 0.93814 0.89170 1.21495 1.01003 1.00010 0.92072 1.21544 0.94221 1.01275 0.97828 1.20161 0.94329 1.02150 0.91299 1.22272 0.90506 0.98411 0.96633 1.76940 1.18340 1.22798 0.93630 1.46217 1.08585 1.57184 1.07392 0.71878 1.21971 0.85341 1.00103 0.98962 1.19462 0.95514 1.14401 0.93302 1.22793 0.95190 0.96915 0.84093 0.90542 1.21380 0.84148 0.87313 1.01890 0.93687 0.94807 0.96507 0.91176 0.90036 0.91182 0.91106 0.90560 0.90767 0.90538 0.91406 0.90032 0.89624 0.81146 0.93162 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.97 10.28 55.49 0.57 -27.40 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 22.50 29.56 -169.99 -5.02 17.47 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.61 10.24 -15.06 -0.15 -6.76 16 8 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 9 N -0.60 -15.44 3.38 -171.39 -0.58 -16.02 16 10 C 0.14 2.83 6.46 -3.39 -0.02 2.81 16 11 C -0.11 -1.79 4.28 -87.73 -0.38 -2.16 16 12 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 13 C -0.12 -1.47 6.34 -24.63 -0.16 -1.62 16 14 C 0.10 1.29 6.26 -2.58 -0.02 1.27 16 15 N -0.60 -10.19 2.98 -161.81 -0.48 -10.67 16 16 C 0.53 9.42 6.22 -10.98 -0.07 9.35 16 17 O -0.52 -11.71 15.92 5.55 0.09 -11.62 16 18 C -0.02 -0.28 2.52 -92.63 -0.23 -0.52 16 19 H 0.09 1.01 6.38 -51.93 -0.33 0.68 16 20 C -0.11 -1.39 5.17 -26.52 -0.14 -1.53 16 21 C -0.11 -1.08 5.86 -26.52 -0.16 -1.23 16 22 C -0.04 -0.44 6.31 -27.56 -0.17 -0.61 16 23 C 0.09 1.25 7.10 -82.35 -0.58 0.67 16 24 N -0.29 -4.22 12.68 33.75 0.43 -3.80 16 25 N -0.49 -5.86 7.37 30.35 0.22 -5.63 16 26 H 0.44 3.70 8.96 -182.44 -1.64 2.07 16 27 C 0.08 1.06 11.19 -17.37 -0.19 0.87 16 28 C -0.22 -3.04 5.05 -104.98 -0.53 -3.57 16 29 C 0.11 2.19 3.68 -65.80 -0.24 1.94 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 C 0.18 4.52 4.91 -3.18 -0.02 4.50 16 32 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.33 6.59 -51.93 -0.34 -0.01 16 35 H 0.07 0.71 8.14 -51.94 -0.42 0.29 16 36 H 0.08 0.82 8.07 -51.93 -0.42 0.41 16 37 H 0.07 0.69 6.60 -51.93 -0.34 0.35 16 38 H 0.07 0.98 7.24 -51.93 -0.38 0.60 16 39 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.17 1.90 8.06 -52.48 -0.42 1.47 16 46 H 0.05 1.45 7.22 -51.93 -0.38 1.08 16 47 H 0.05 1.57 6.78 -51.93 -0.35 1.22 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -36.39 363.92 -10.81 -47.20 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -8.36 Total: 1.80 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -3.15 Total: 3.19 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.16 Total: -63.52 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.39 -10.81 -47.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075791953.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.354 kcal (2) G-P(sol) polarization free energy of solvation -36.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds