Wall clock time and date at job start Tue Mar 31 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00154 * 2 1 4 4 H 1.48509 * 109.47125 * 270.00324 * 3 2 1 5 5 H 1.48503 * 109.47189 * 29.99796 * 3 2 1 6 6 H 1.48500 * 109.47543 * 150.00186 * 3 2 1 7 7 C 1.38811 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.46642 * 125.28496 * 180.02562 * 9 7 2 11 11 C 1.53519 * 107.04997 * 197.36071 * 10 9 7 12 12 H 1.09006 * 112.80686 * 210.79743 * 11 10 9 13 13 C 1.54783 * 109.68788 * 84.08438 * 11 10 9 14 14 C 1.54954 * 101.45265 * 212.92610 * 13 11 10 15 15 N 1.47348 * 104.90082 * 37.25672 * 14 13 11 16 16 C 1.34774 * 125.51991 * 156.70251 * 15 14 13 17 17 O 1.21286 * 119.99520 * 174.97120 * 16 15 14 18 18 C 1.50703 * 120.00257 * 354.97147 * 16 15 14 19 19 H 1.08998 * 109.71307 * 333.02523 * 18 16 15 20 20 C 1.53380 * 109.71172 * 212.38376 * 18 16 15 21 21 C 1.53029 * 109.74194 * 189.67157 * 20 18 16 22 22 C 1.53388 * 109.72052 * 71.73031 * 21 20 18 23 23 C 1.50887 * 108.19162 * 309.45240 * 22 21 20 24 24 C 1.34570 * 128.32725 * 196.74297 * 23 22 21 25 25 N 1.35193 * 107.61925 * 179.71854 * 24 23 22 26 26 H 0.97000 * 126.00735 * 180.02562 * 25 24 23 27 27 N 1.40319 * 107.99389 * 0.03948 * 25 24 23 28 28 C 1.30130 * 108.12229 * 0.04365 * 27 25 24 29 29 C 1.47253 * 108.95278 * 336.73700 * 15 14 13 30 30 H 1.08998 * 112.73075 * 236.14567 * 29 15 14 31 31 C 1.46489 * 125.28773 * 359.97187 * 9 7 2 32 32 H 0.96999 * 120.00022 * 359.97438 * 1 2 3 33 33 H 1.09003 * 109.92381 * 316.70667 * 10 9 7 34 34 H 1.08995 * 109.92529 * 78.00760 * 10 9 7 35 35 H 1.08996 * 111.02991 * 330.97127 * 13 11 10 36 36 H 1.08996 * 111.02781 * 94.88629 * 13 11 10 37 37 H 1.09004 * 110.35355 * 156.11237 * 14 13 11 38 38 H 1.08997 * 110.35486 * 278.29030 * 14 13 11 39 39 H 1.08998 * 109.42651 * 309.75508 * 20 18 16 40 40 H 1.08993 * 109.42466 * 69.59178 * 20 18 16 41 41 H 1.08991 * 109.42928 * 311.64594 * 21 20 18 42 42 H 1.08998 * 109.42225 * 191.80058 * 21 20 18 43 43 H 1.09002 * 109.71384 * 189.78564 * 22 21 20 44 44 H 1.08992 * 109.71917 * 69.13088 * 22 21 20 45 45 H 1.08004 * 126.18948 * 359.68219 * 24 23 22 46 46 H 1.09003 * 109.71697 * 297.78745 * 31 9 7 47 47 H 1.09000 * 109.71479 * 58.33402 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9385 -3.7202 0.0016 11 6 0.8545 -4.7150 -0.4367 12 1 0.9807 -5.7013 0.0098 13 6 0.7821 -4.7598 -1.9822 14 6 -0.7270 -5.0264 -2.2119 15 7 -1.4128 -4.2484 -1.1652 16 6 -2.6875 -3.8143 -1.2207 17 8 -3.1812 -3.2590 -0.2622 18 6 -3.4993 -4.0189 -2.4738 19 1 -2.8361 -4.0699 -3.3373 20 6 -4.4863 -2.8576 -2.6462 21 6 -5.4698 -3.1781 -3.7739 22 6 -6.4445 -4.2703 -3.3158 23 6 -5.6389 -5.4119 -2.7460 24 6 -6.0332 -6.6774 -2.5141 25 7 -4.9759 -7.3486 -2.0048 26 1 -4.9659 -8.2823 -1.7423 27 7 -3.8954 -6.4571 -1.9223 28 6 -4.2917 -5.2989 -2.3639 29 6 -0.4794 -4.0214 -0.0491 30 1 -0.8666 -4.3823 0.9037 31 6 -0.1332 -2.5231 0.0006 32 1 -0.4850 0.8400 0.0004 33 1 2.7720 -3.7461 -0.7005 34 1 2.2865 -3.9682 1.0043 35 1 1.0811 -3.8055 -2.4156 36 1 1.3879 -5.5745 -2.3787 37 1 -1.0272 -4.6789 -3.2005 38 1 -0.9454 -6.0885 -2.1016 39 1 -5.0363 -2.7083 -1.7171 40 1 -3.9372 -1.9486 -2.8916 41 1 -4.9188 -3.5268 -4.6473 42 1 -6.0287 -2.2792 -4.0338 43 1 -7.0294 -4.6214 -4.1660 44 1 -7.1100 -3.8717 -2.5502 45 1 -7.0165 -7.0834 -2.7006 46 1 -0.5434 -2.0806 0.9084 47 1 -0.5490 -2.0206 -0.8727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075792107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:14 Heat of formation + Delta-G solvation = 70.990815 kcal Electronic energy + Delta-G solvation = -29629.386744 eV Core-core repulsion = 25814.186117 eV Total energy + Delta-G solvation = -3815.200628 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63367 -39.92068 -37.99594 -36.08231 -34.79371 -32.56587 -31.92227 -30.54920 -30.52967 -29.04871 -28.30375 -26.65238 -24.85384 -24.26896 -22.62944 -21.80812 -21.47931 -20.34665 -19.55547 -18.88542 -18.28567 -17.71060 -16.97586 -16.51374 -15.75492 -15.36533 -15.02705 -14.55142 -14.39482 -14.23555 -14.00006 -13.56308 -13.47525 -13.35453 -13.02092 -12.72635 -12.52118 -12.25769 -12.04204 -12.01206 -11.64249 -11.52271 -11.32698 -11.03937 -10.93554 -10.86622 -10.73583 -10.70303 -10.52421 -10.37082 -10.12310 -9.93099 -9.78172 -9.65651 -9.63269 -9.09690 -8.52171 -8.49801 -8.00911 -6.73320 -5.60369 -2.96869 1.79829 2.58052 2.71777 3.17484 3.44771 3.49010 3.50364 3.52539 4.35174 4.56473 4.61279 4.75186 4.87835 4.97201 4.99197 5.09370 5.18909 5.30115 5.40884 5.42328 5.46553 5.57456 5.65263 5.65693 5.71467 5.76970 5.87869 5.90597 5.92582 6.02678 6.03917 6.07265 6.17458 6.20327 6.30748 6.44960 6.50695 6.53278 6.68148 6.69815 6.77083 6.95921 7.17634 7.57665 7.67444 7.71744 7.98532 8.12474 8.37577 8.72461 9.31091 9.91938 10.55437 11.48971 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.003731 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.105195 B = 7501.897069 C = 8630.038641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.111 4.111 12 H 0.087 0.913 13 C -0.122 4.122 14 C 0.106 3.894 15 N -0.598 5.598 16 C 0.542 3.458 17 O -0.528 6.528 18 C -0.022 4.022 19 H 0.104 0.896 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.041 4.041 23 C -0.228 4.228 24 C 0.056 3.944 25 N -0.485 5.485 26 H 0.438 0.562 27 N -0.275 5.275 28 C 0.098 3.902 29 C 0.116 3.884 30 H 0.078 0.922 31 C 0.180 3.820 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.016 0.984 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.175 0.825 46 H 0.043 0.957 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 -15.584 -9.997 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.019 3.981 11 C -0.131 4.131 12 H 0.105 0.895 13 C -0.159 4.159 14 C -0.018 4.018 15 N -0.332 5.332 16 C 0.328 3.672 17 O -0.404 6.404 18 C -0.045 4.045 19 H 0.122 0.878 20 C -0.143 4.143 21 C -0.153 4.153 22 C -0.080 4.080 23 C -0.240 4.240 24 C -0.089 4.089 25 N -0.194 5.194 26 H 0.282 0.718 27 N -0.097 5.097 28 C -0.071 4.071 29 C 0.012 3.988 30 H 0.096 0.904 31 C 0.055 3.945 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.033 0.967 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.192 0.808 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.131 -15.686 -8.993 21.232 hybrid contribution -0.235 0.597 -0.170 0.664 sum -11.366 -15.089 -9.163 20.996 Atomic orbital electron populations 1.70014 1.04728 1.24983 1.56364 1.24835 0.95672 0.97638 1.02123 0.86154 0.78571 0.83739 0.77473 1.21672 1.21700 1.20739 1.19007 0.90343 0.82307 1.44476 0.90429 1.44137 1.01497 0.99959 1.87316 1.21063 0.93877 0.85784 0.97421 1.22945 0.95683 0.98704 0.95721 0.89523 1.22759 0.94399 1.02867 0.95924 1.22271 0.92728 0.95541 0.91228 1.48430 1.10984 1.53932 1.19833 1.19633 0.80483 0.78339 0.88718 1.90712 1.69723 1.42473 1.37469 1.19872 0.96047 0.90848 0.97763 0.87793 1.21498 0.96453 0.95953 1.00377 1.21563 0.97207 0.98469 0.98055 1.20025 0.96280 0.92244 0.99423 1.20098 0.95271 0.95758 1.12823 1.22010 0.93974 0.93061 0.99873 1.46327 1.07993 1.12323 1.52727 0.71832 1.77107 1.09327 1.00123 1.23149 1.21775 0.94049 0.93146 0.98115 1.22793 0.87317 0.99687 0.88955 0.90425 1.21259 0.84049 0.87357 1.01871 0.93714 0.94386 0.96659 0.89588 0.90701 0.91523 0.91509 0.89802 0.90261 0.91737 0.90979 0.91280 0.91074 0.80776 0.93869 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.06 10.23 55.49 0.57 -27.49 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.63 10.25 -15.06 -0.15 -6.79 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.79 3.37 -172.28 -0.58 -16.37 16 10 C 0.15 3.02 6.50 -3.70 -0.02 3.00 16 11 C -0.11 -1.95 3.97 -88.21 -0.35 -2.30 16 12 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.12 -1.87 6.32 -24.76 -0.16 -2.03 16 14 C 0.11 1.59 6.70 -2.55 -0.02 1.57 16 15 N -0.60 -11.32 2.83 -161.80 -0.46 -11.78 16 16 C 0.54 10.70 6.49 -10.98 -0.07 10.63 16 17 O -0.53 -12.60 16.24 5.55 0.09 -12.51 16 18 C -0.02 -0.34 2.49 -92.61 -0.23 -0.57 16 19 H 0.10 1.42 6.47 -51.93 -0.34 1.08 16 20 C -0.10 -1.45 4.98 -26.52 -0.13 -1.58 16 21 C -0.12 -1.17 5.87 -26.52 -0.16 -1.32 16 22 C -0.04 -0.39 6.28 -27.59 -0.17 -0.56 16 23 C -0.23 -2.65 5.89 -104.98 -0.62 -3.27 16 24 C 0.06 0.52 11.95 -17.37 -0.21 0.31 16 25 N -0.49 -4.99 7.37 30.35 0.22 -4.77 16 26 H 0.44 2.97 8.96 -182.43 -1.64 1.34 16 27 N -0.28 -3.97 12.58 33.75 0.42 -3.55 16 28 C 0.10 1.42 6.42 -82.35 -0.53 0.89 16 29 C 0.12 2.43 3.79 -65.87 -0.25 2.18 16 30 H 0.08 1.68 8.14 -51.93 -0.42 1.25 16 31 C 0.18 4.70 4.73 -3.60 -0.02 4.69 16 32 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.04 0.76 7.95 -51.93 -0.41 0.34 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.90 6.66 -51.93 -0.35 0.55 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 1.32 7.48 -51.93 -0.39 0.93 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 46 H 0.04 1.31 7.51 -51.93 -0.39 0.92 16 47 H 0.06 1.62 6.88 -51.93 -0.36 1.26 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -36.54 367.04 -10.88 -47.42 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.47 Total: 1.34 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -3.18 Total: 4.58 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.18 Total: -63.96 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.54 -10.88 -47.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075792107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.409 kcal (2) G-P(sol) polarization free energy of solvation -36.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds