Wall clock time and date at job start Tue Mar 31 2020 06:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00154 * 2 1 4 4 H 1.48509 * 109.47125 * 270.00324 * 3 2 1 5 5 H 1.48503 * 109.47189 * 29.99796 * 3 2 1 6 6 H 1.48500 * 109.47543 * 150.00186 * 3 2 1 7 7 C 1.38811 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00086 * 0.02562 * 7 2 1 10 10 C 1.46642 * 125.28496 * 180.02562 * 9 7 2 11 11 C 1.53519 * 107.04997 * 197.36071 * 10 9 7 12 12 H 1.09006 * 112.80686 * 210.79743 * 11 10 9 13 13 C 1.54783 * 109.68788 * 84.08438 * 11 10 9 14 14 C 1.54954 * 101.45265 * 212.92610 * 13 11 10 15 15 N 1.47348 * 104.90082 * 37.25672 * 14 13 11 16 16 C 1.34774 * 125.51991 * 156.70251 * 15 14 13 17 17 O 1.21286 * 119.99520 * 174.97120 * 16 15 14 18 18 C 1.50703 * 120.00257 * 354.97147 * 16 15 14 19 19 H 1.08998 * 109.71307 * 333.02523 * 18 16 15 20 20 C 1.53380 * 109.71172 * 212.38376 * 18 16 15 21 21 C 1.53029 * 109.74194 * 189.67157 * 20 18 16 22 22 C 1.53388 * 109.72052 * 71.73031 * 21 20 18 23 23 C 1.50887 * 108.19162 * 309.45240 * 22 21 20 24 24 C 1.34570 * 128.32725 * 196.74297 * 23 22 21 25 25 N 1.35193 * 107.61925 * 179.71854 * 24 23 22 26 26 H 0.97000 * 126.00735 * 180.02562 * 25 24 23 27 27 N 1.40319 * 107.99389 * 0.03948 * 25 24 23 28 28 C 1.30130 * 108.12229 * 0.04365 * 27 25 24 29 29 C 1.47253 * 108.95278 * 336.73700 * 15 14 13 30 30 H 1.08998 * 112.73075 * 236.14567 * 29 15 14 31 31 C 1.46489 * 125.28773 * 359.97187 * 9 7 2 32 32 H 0.96999 * 120.00022 * 359.97438 * 1 2 3 33 33 H 1.09003 * 109.92381 * 316.70667 * 10 9 7 34 34 H 1.08995 * 109.92529 * 78.00760 * 10 9 7 35 35 H 1.08996 * 111.02991 * 330.97127 * 13 11 10 36 36 H 1.08996 * 111.02781 * 94.88629 * 13 11 10 37 37 H 1.09004 * 110.35355 * 156.11237 * 14 13 11 38 38 H 1.08997 * 110.35486 * 278.29030 * 14 13 11 39 39 H 1.08998 * 109.42651 * 309.75508 * 20 18 16 40 40 H 1.08993 * 109.42466 * 69.59178 * 20 18 16 41 41 H 1.08991 * 109.42928 * 311.64594 * 21 20 18 42 42 H 1.08998 * 109.42225 * 191.80058 * 21 20 18 43 43 H 1.09002 * 109.71384 * 189.78564 * 22 21 20 44 44 H 1.08992 * 109.71917 * 69.13088 * 22 21 20 45 45 H 1.08004 * 126.18948 * 359.68219 * 24 23 22 46 46 H 1.09003 * 109.71697 * 297.78745 * 31 9 7 47 47 H 1.09000 * 109.71479 * 58.33402 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4002 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.9385 -3.7202 0.0016 11 6 0.8545 -4.7150 -0.4367 12 1 0.9807 -5.7013 0.0098 13 6 0.7821 -4.7598 -1.9822 14 6 -0.7270 -5.0264 -2.2119 15 7 -1.4128 -4.2484 -1.1652 16 6 -2.6875 -3.8143 -1.2207 17 8 -3.1812 -3.2590 -0.2622 18 6 -3.4993 -4.0189 -2.4738 19 1 -2.8361 -4.0699 -3.3373 20 6 -4.4863 -2.8576 -2.6462 21 6 -5.4698 -3.1781 -3.7739 22 6 -6.4445 -4.2703 -3.3158 23 6 -5.6389 -5.4119 -2.7460 24 6 -6.0332 -6.6774 -2.5141 25 7 -4.9759 -7.3486 -2.0048 26 1 -4.9659 -8.2823 -1.7423 27 7 -3.8954 -6.4571 -1.9223 28 6 -4.2917 -5.2989 -2.3639 29 6 -0.4794 -4.0214 -0.0491 30 1 -0.8666 -4.3823 0.9037 31 6 -0.1332 -2.5231 0.0006 32 1 -0.4850 0.8400 0.0004 33 1 2.7720 -3.7461 -0.7005 34 1 2.2865 -3.9682 1.0043 35 1 1.0811 -3.8055 -2.4156 36 1 1.3879 -5.5745 -2.3787 37 1 -1.0272 -4.6789 -3.2005 38 1 -0.9454 -6.0885 -2.1016 39 1 -5.0363 -2.7083 -1.7171 40 1 -3.9372 -1.9486 -2.8916 41 1 -4.9188 -3.5268 -4.6473 42 1 -6.0287 -2.2792 -4.0338 43 1 -7.0294 -4.6214 -4.1660 44 1 -7.1100 -3.8717 -2.5502 45 1 -7.0165 -7.0834 -2.7006 46 1 -0.5434 -2.0806 0.9084 47 1 -0.5490 -2.0206 -0.8727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075792107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:13 Heat of formation + Delta-G solvation = 45.499093 kcal Electronic energy + Delta-G solvation = -29630.492148 eV Core-core repulsion = 25814.186117 eV Total energy + Delta-G solvation = -3816.306032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.55858 -41.43122 -39.54678 -37.15516 -36.61390 -34.18549 -33.23640 -32.20098 -31.47763 -30.54822 -29.59893 -28.31573 -26.55787 -25.65269 -23.98220 -22.73700 -22.71189 -22.01495 -20.93884 -20.18629 -19.57556 -18.95068 -18.55602 -18.03411 -17.27678 -16.76229 -16.51406 -16.10974 -15.63952 -15.48061 -15.24750 -15.04066 -14.96637 -14.46035 -14.28886 -14.24006 -13.73976 -13.65389 -13.46615 -13.35388 -13.23575 -13.01024 -12.88507 -12.69895 -12.65505 -12.35217 -12.15726 -11.88066 -11.85387 -11.77496 -11.64193 -11.52209 -11.49113 -11.45414 -10.85321 -10.72155 -10.31542 -9.61196 -9.31405 -8.90869 -7.83384 -5.23282 0.96044 1.42858 1.46371 1.54146 1.55271 1.70097 2.00315 2.12401 2.48718 3.28561 3.33368 3.45320 3.64089 3.67203 3.73864 3.83684 3.93011 4.03109 4.10904 4.26939 4.34935 4.36755 4.40891 4.47842 4.50351 4.56446 4.63086 4.70856 4.79020 4.86237 4.89655 4.94480 5.04167 5.08935 5.13954 5.16315 5.21154 5.27399 5.33456 5.44611 5.47705 5.48731 5.57659 5.66287 5.78358 6.18345 6.51260 6.60346 6.71026 7.06683 7.19327 7.77702 8.39637 9.24829 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.003731 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.105195 B = 7501.897069 C = 8630.038641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.622 5.622 10 C 0.138 3.862 11 C -0.093 4.093 12 H 0.129 0.871 13 C -0.112 4.112 14 C 0.106 3.894 15 N -0.601 5.601 16 C 0.530 3.470 17 O -0.587 6.587 18 C -0.013 4.013 19 H 0.118 0.882 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.037 4.037 23 C -0.252 4.252 24 C 0.079 3.921 25 N -0.474 5.474 26 H 0.453 0.547 27 N -0.313 5.313 28 C 0.075 3.925 29 C 0.117 3.883 30 H 0.064 0.936 31 C 0.205 3.795 32 H 0.243 0.757 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.224 0.776 46 H -0.020 1.020 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.590 -18.638 -12.376 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.810 3.190 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.349 5.349 10 C 0.013 3.987 11 C -0.112 4.112 12 H 0.147 0.853 13 C -0.149 4.149 14 C -0.016 4.016 15 N -0.333 5.333 16 C 0.319 3.681 17 O -0.467 6.467 18 C -0.036 4.036 19 H 0.136 0.864 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.075 4.075 23 C -0.264 4.264 24 C -0.067 4.067 25 N -0.185 5.185 26 H 0.299 0.701 27 N -0.137 5.137 28 C -0.092 4.092 29 C 0.012 3.988 30 H 0.082 0.918 31 C 0.079 3.921 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.240 0.760 46 H -0.002 1.002 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -10.980 -18.808 -11.402 24.582 hybrid contribution -0.252 1.484 0.651 1.640 sum -11.231 -17.324 -10.751 23.277 Atomic orbital electron populations 1.70317 1.06653 1.25023 1.58121 1.25786 0.96460 1.01515 1.02521 0.85030 0.77602 0.78762 0.77641 1.20845 1.22634 1.18842 1.19510 0.91158 0.83430 1.43115 0.89142 1.44435 1.01695 1.01711 1.87029 1.21332 0.95260 0.83899 0.98248 1.22997 0.91410 0.99143 0.97677 0.85320 1.22755 0.95158 1.03183 0.93836 1.22524 0.92087 0.96195 0.90770 1.48571 1.10703 1.53855 1.20151 1.20611 0.80858 0.76976 0.89619 1.90668 1.71107 1.44972 1.39905 1.19804 0.96010 0.92469 0.95359 0.86397 1.21492 0.96842 0.95113 1.00795 1.21549 0.96639 0.99817 0.96495 1.20068 0.95848 0.91182 1.00437 1.20453 0.94365 0.97541 1.14015 1.22715 0.95038 0.91945 0.97040 1.46378 1.07458 1.12767 1.51871 0.70067 1.76981 1.11525 1.00798 1.24361 1.21677 0.95404 0.92573 0.99589 1.22528 0.90017 0.96400 0.89881 0.91819 1.20737 0.84111 0.90412 0.96862 0.94802 0.92526 0.96067 0.92580 0.85873 0.89838 0.89128 0.92640 0.91914 0.90557 0.89344 0.88040 0.91312 0.75990 1.00159 0.96822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.58 10.23 21.65 0.22 -62.36 16 2 C -0.07 -4.23 5.48 84.86 0.47 -3.76 16 3 Si 0.98 47.98 29.55 68.60 2.03 50.00 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.24 -14.20 10.25 84.03 0.86 -13.34 16 8 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 9 N -0.62 -33.76 3.37 -698.98 -2.36 -36.12 16 10 C 0.14 5.61 6.50 86.53 0.56 6.18 16 11 C -0.09 -3.10 3.97 -9.23 -0.04 -3.14 16 12 H 0.13 3.32 8.14 -2.38 -0.02 3.30 16 13 C -0.11 -3.14 6.32 31.87 0.20 -2.94 16 14 C 0.11 2.99 6.70 86.89 0.58 3.57 16 15 N -0.60 -23.44 2.83 -784.22 -2.22 -25.66 16 16 C 0.53 22.31 6.49 87.66 0.57 22.88 16 17 O -0.59 -30.73 16.24 -3.05 -0.05 -30.78 16 18 C -0.01 -0.42 2.49 -12.08 -0.03 -0.45 16 19 H 0.12 3.23 6.47 -2.39 -0.02 3.22 16 20 C -0.10 -3.06 4.98 30.73 0.15 -2.91 16 21 C -0.11 -2.06 5.87 30.73 0.18 -1.88 16 22 C -0.04 -0.62 6.28 30.04 0.19 -0.43 16 23 C -0.25 -5.33 5.89 -20.10 -0.12 -5.45 16 24 C 0.08 1.16 11.95 83.33 1.00 2.16 16 25 N -0.47 -8.47 7.37 -57.89 -0.43 -8.89 16 26 H 0.45 4.80 8.96 -213.18 -1.91 2.89 16 27 N -0.31 -8.63 12.58 -47.14 -0.59 -9.23 16 28 C 0.08 2.12 6.42 43.44 0.28 2.40 16 29 C 0.12 5.08 3.79 45.92 0.17 5.26 16 30 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 31 C 0.21 11.54 4.73 86.67 0.41 11.95 16 32 H 0.24 15.65 8.31 -92.71 -0.77 14.88 16 33 H 0.06 2.12 7.95 -2.39 -0.02 2.11 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 36 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 2.10 6.66 -2.39 -0.02 2.09 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.05 1.92 7.48 -2.39 -0.02 1.91 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 42 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.22 0.97 8.06 -2.91 -0.02 0.94 16 46 H -0.02 -1.33 7.51 -2.39 -0.02 -1.35 16 47 H 0.01 0.87 6.88 -2.39 -0.02 0.85 16 Total: -1.00 -89.49 367.04 1.12 -88.37 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -0.92 Total: 14.56 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: 5.44 Total: 20.10 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -5.38 Total: -142.26 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.05 Total: -30.78 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.00 kcal Total: -89.49 1.12 -88.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075792107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.872 kcal (2) G-P(sol) polarization free energy of solvation -89.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds