Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48507 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47056 * 299.99438 * 3 2 1 6 6 H 1.48502 * 109.47181 * 59.99621 * 3 2 1 7 7 C 1.38817 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.46699 * 125.32474 * 179.97438 * 9 7 2 11 11 C 1.54046 * 106.83002 * 161.82172 * 10 9 7 12 12 H 1.08994 * 114.12216 * 263.18764 * 11 10 9 13 13 C 1.55122 * 108.83492 * 136.02095 * 11 10 9 14 14 C 1.54846 * 101.77979 * 285.88388 * 13 11 10 15 15 N 1.47398 * 104.81477 * 322.81854 * 14 13 11 16 16 C 1.34778 * 125.59293 * 204.62669 * 15 14 13 17 17 O 1.21277 * 119.99997 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99900 * 359.97438 * 16 15 14 19 19 H 1.08998 * 109.70842 * 60.60065 * 18 16 15 20 20 C 1.53365 * 109.71325 * 181.24564 * 18 16 15 21 21 C 1.53042 * 109.74250 * 170.32853 * 20 18 16 22 22 C 1.53378 * 109.71892 * 288.27379 * 21 20 18 23 23 C 1.50888 * 108.19741 * 50.53669 * 22 21 20 24 24 C 1.34566 * 128.32517 * 163.25228 * 23 22 21 25 25 N 1.35205 * 107.61787 * 180.29753 * 24 23 22 26 26 H 0.97001 * 126.00525 * 179.97438 * 25 24 23 27 27 N 1.40316 * 107.98861 * 359.96022 * 25 24 23 28 28 C 1.30124 * 108.12610 * 359.95894 * 27 25 24 29 29 C 1.46735 * 108.81958 * 24.60514 * 15 14 13 30 30 H 1.09002 * 111.32988 * 236.12451 * 29 15 14 31 31 C 1.47816 * 125.18549 * 0.61879 * 9 7 2 32 32 H 0.96997 * 120.00481 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.98533 * 42.48470 * 10 9 7 34 34 H 1.08993 * 110.02578 * 281.18863 * 10 9 7 35 35 H 1.09011 * 110.96471 * 167.76544 * 13 11 10 36 36 H 1.08998 * 110.99826 * 44.02487 * 13 11 10 37 37 H 1.08997 * 110.37411 * 203.98492 * 14 13 11 38 38 H 1.09006 * 110.46314 * 81.69619 * 14 13 11 39 39 H 1.09000 * 109.43027 * 290.41196 * 20 18 16 40 40 H 1.09002 * 109.42780 * 50.25023 * 20 18 16 41 41 H 1.08999 * 109.42517 * 168.19569 * 21 20 18 42 42 H 1.09001 * 109.38870 * 48.32293 * 21 20 18 43 43 H 1.09001 * 109.71816 * 290.86429 * 22 21 20 44 44 H 1.09003 * 109.72425 * 170.21508 * 22 21 20 45 45 H 1.08001 * 126.19976 * 0.24893 * 24 23 22 46 46 H 1.08998 * 110.40958 * 61.92891 * 31 9 7 47 47 H 1.09000 * 109.71009 * 300.84643 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9381 -3.7211 0.0005 11 6 0.8513 -4.7113 0.4605 12 1 0.8937 -4.9580 1.5213 13 6 0.8953 -5.9635 -0.4539 14 6 0.2624 -5.4235 -1.7600 15 7 -0.8010 -4.5063 -1.3123 16 6 -1.8960 -4.1689 -2.0220 17 8 -2.7100 -3.4020 -1.5530 18 6 -2.1089 -4.7447 -3.3983 19 1 -2.1730 -5.8311 -3.3364 20 6 -3.4028 -4.1825 -3.9999 21 6 -3.4981 -4.5720 -5.4768 22 6 -2.4739 -3.7710 -6.2904 23 6 -1.1297 -3.9045 -5.6181 24 6 0.0876 -3.6397 -6.1267 25 7 1.0001 -3.9112 -5.1666 26 1 1.9616 -3.8140 -5.2499 27 7 0.3117 -4.3579 -4.0284 28 6 -0.9614 -4.3527 -4.2973 29 6 -0.4724 -4.0212 0.0330 30 1 -1.2768 -4.2315 0.7378 31 6 -0.1465 -2.5218 -0.0130 32 1 -0.4851 0.8400 -0.0004 33 1 2.7801 -3.7442 0.6924 34 1 2.2744 -3.9773 -1.0040 35 1 0.2965 -6.7729 -0.0360 36 1 1.9221 -6.2878 -0.6231 37 1 -0.1622 -6.2413 -2.3422 38 1 1.0049 -4.8849 -2.3489 39 1 -4.2592 -4.5889 -3.4618 40 1 -3.4019 -3.0962 -3.9109 41 1 -4.5014 -4.3570 -5.8444 42 1 -3.2932 -5.6372 -5.5841 43 1 -2.7676 -2.7217 -6.3203 44 1 -2.4188 -4.1670 -7.3045 45 1 0.2980 -3.2769 -7.1219 46 1 -0.5596 -2.0825 -0.9210 47 1 -0.5687 -2.0261 0.8611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075792108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = 82.177431 kcal Electronic energy + Delta-G solvation = -30411.949846 eV Core-core repulsion = 26597.234307 eV Total energy + Delta-G solvation = -3814.715540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52724 -39.87267 -37.95769 -35.99853 -34.62008 -32.61955 -31.64449 -30.70843 -30.36733 -28.87497 -28.42575 -26.21534 -24.75237 -24.45893 -22.47573 -21.70763 -21.55632 -20.35022 -19.40360 -18.96135 -18.00792 -17.65113 -16.86415 -16.49334 -15.65420 -15.45483 -14.76037 -14.62110 -14.29619 -14.13345 -13.87623 -13.68159 -13.39494 -13.19101 -12.76064 -12.70357 -12.51450 -12.38241 -12.04984 -11.84146 -11.71596 -11.58829 -11.18356 -10.98046 -10.90117 -10.82000 -10.72052 -10.60612 -10.33665 -10.23257 -10.07693 -9.93555 -9.72466 -9.58219 -9.47661 -9.01132 -8.50601 -8.33452 -7.85018 -6.69872 -5.58049 -2.93125 1.99353 2.70044 2.91129 3.27457 3.44231 3.48450 3.52082 3.58026 4.46361 4.56815 4.67347 4.80932 4.92841 5.00082 5.04738 5.14185 5.28009 5.33691 5.43804 5.45206 5.56859 5.59484 5.68450 5.72638 5.78310 5.84067 5.92516 5.96894 6.00979 6.04199 6.10869 6.14084 6.17330 6.25223 6.45513 6.47508 6.54461 6.64149 6.70701 6.80118 6.84437 7.04077 7.40730 7.67262 7.75014 7.78538 8.02040 8.19666 8.38146 8.76411 9.31949 9.94247 10.59537 11.51843 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004908 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.359002 B = 5703.800939 C = 6376.941910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.108 4.108 12 H 0.093 0.907 13 C -0.128 4.128 14 C 0.099 3.901 15 N -0.592 5.592 16 C 0.533 3.467 17 O -0.532 6.532 18 C -0.020 4.020 19 H 0.107 0.893 20 C -0.098 4.098 21 C -0.115 4.115 22 C -0.041 4.041 23 C -0.232 4.232 24 C 0.060 3.940 25 N -0.482 5.482 26 H 0.439 0.561 27 N -0.261 5.261 28 C 0.086 3.914 29 C 0.113 3.887 30 H 0.075 0.925 31 C 0.181 3.819 32 H 0.251 0.749 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.173 0.827 46 H 0.053 0.947 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -14.974 -12.829 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.021 3.979 11 C -0.128 4.128 12 H 0.112 0.888 13 C -0.167 4.167 14 C -0.024 4.024 15 N -0.325 5.325 16 C 0.319 3.681 17 O -0.409 6.409 18 C -0.043 4.043 19 H 0.124 0.876 20 C -0.137 4.137 21 C -0.153 4.153 22 C -0.079 4.079 23 C -0.244 4.244 24 C -0.086 4.086 25 N -0.189 5.189 26 H 0.282 0.718 27 N -0.083 5.083 28 C -0.082 4.082 29 C 0.010 3.990 30 H 0.093 0.907 31 C 0.056 3.944 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.190 0.810 46 H 0.071 0.929 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.958 -14.542 -11.763 18.806 hybrid contribution 0.589 1.203 -0.728 1.524 sum -1.369 -13.339 -12.491 18.326 Atomic orbital electron populations 1.70004 1.04711 1.24745 1.56670 1.24815 0.95643 0.97542 1.02437 0.86107 0.78610 0.84217 0.77196 1.20624 1.21966 1.21749 1.19037 0.90258 0.82501 1.43949 0.90618 1.44488 1.01497 0.99813 1.87152 1.21201 0.93681 0.85878 0.97137 1.23095 0.95907 0.94703 0.99117 0.88831 1.22817 1.00940 0.97090 0.95837 1.22768 0.91382 0.92259 0.96013 1.48253 1.21093 1.45875 1.17267 1.19711 0.80738 0.81686 0.85950 1.90724 1.44284 1.35028 1.70838 1.19877 0.92398 1.01347 0.90695 0.87561 1.21413 0.94649 1.02843 0.94751 1.21569 0.98883 1.00009 0.94797 1.19998 0.90006 1.00423 0.97489 1.20004 0.95507 1.13449 0.95421 1.21996 0.89444 1.01534 0.95649 1.46509 1.09241 1.53602 1.09557 0.71768 1.77340 1.05401 1.20720 1.04796 1.21870 0.92109 0.99982 0.94264 1.22612 0.95620 0.98102 0.82698 0.90750 1.21391 0.83871 0.87284 1.01839 0.93831 0.95048 0.96433 0.91607 0.90383 0.92437 0.87338 0.90553 0.90189 0.91207 0.91859 0.91200 0.91403 0.81008 0.92935 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.81 10.24 55.49 0.57 -28.25 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.23 -6.68 10.25 -15.06 -0.15 -6.83 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -16.21 3.41 -171.05 -0.58 -16.79 16 10 C 0.15 3.14 6.48 -3.39 -0.02 3.12 16 11 C -0.11 -1.94 4.30 -87.74 -0.38 -2.32 16 12 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 13 C -0.13 -1.81 6.36 -24.64 -0.16 -1.97 16 14 C 0.10 1.57 4.45 -2.58 -0.01 1.56 16 15 N -0.59 -11.35 2.94 -162.41 -0.48 -11.83 16 16 C 0.53 10.50 6.74 -10.98 -0.07 10.43 16 17 O -0.53 -12.53 15.69 5.56 0.09 -12.44 16 18 C -0.02 -0.30 2.24 -92.61 -0.21 -0.51 16 19 H 0.11 1.33 7.87 -51.93 -0.41 0.92 16 20 C -0.10 -1.31 4.60 -26.52 -0.12 -1.43 16 21 C -0.12 -1.14 5.87 -26.51 -0.16 -1.30 16 22 C -0.04 -0.42 6.28 -27.60 -0.17 -0.60 16 23 C -0.23 -3.02 5.89 -104.98 -0.62 -3.64 16 24 C 0.06 0.68 11.95 -17.36 -0.21 0.47 16 25 N -0.48 -6.14 7.37 30.35 0.22 -5.91 16 26 H 0.44 4.34 8.96 -182.43 -1.64 2.71 16 27 N -0.26 -4.18 8.14 33.75 0.27 -3.90 16 28 C 0.09 1.33 6.19 -82.35 -0.51 0.82 16 29 C 0.11 2.39 3.57 -66.33 -0.24 2.16 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 31 C 0.18 4.86 4.96 -3.05 -0.02 4.84 16 32 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.02 0.38 6.60 -51.93 -0.34 0.04 16 35 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 36 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.06 0.79 7.42 -51.93 -0.39 0.41 16 38 H 0.11 1.91 4.71 -51.93 -0.24 1.67 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.28 7.77 -51.93 -0.40 0.88 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 46 H 0.05 1.64 6.68 -51.93 -0.35 1.29 16 47 H 0.05 1.53 7.30 -51.93 -0.38 1.16 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -37.09 357.14 -11.02 -48.11 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.34 Total: 3.05 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -3.14 Total: 4.48 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.01 Total: -66.68 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.09 -11.02 -48.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075792108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.285 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds