Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 119.99980 * 2 1 4 4 H 1.48507 * 109.46957 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47056 * 299.99438 * 3 2 1 6 6 H 1.48502 * 109.47181 * 59.99621 * 3 2 1 7 7 C 1.38817 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.46699 * 125.32474 * 179.97438 * 9 7 2 11 11 C 1.54046 * 106.83002 * 161.82172 * 10 9 7 12 12 H 1.08994 * 114.12216 * 263.18764 * 11 10 9 13 13 C 1.55122 * 108.83492 * 136.02095 * 11 10 9 14 14 C 1.54846 * 101.77979 * 285.88388 * 13 11 10 15 15 N 1.47398 * 104.81477 * 322.81854 * 14 13 11 16 16 C 1.34778 * 125.59293 * 204.62669 * 15 14 13 17 17 O 1.21277 * 119.99997 * 179.97438 * 16 15 14 18 18 C 1.50703 * 119.99900 * 359.97438 * 16 15 14 19 19 H 1.08998 * 109.70842 * 60.60065 * 18 16 15 20 20 C 1.53365 * 109.71325 * 181.24564 * 18 16 15 21 21 C 1.53042 * 109.74250 * 170.32853 * 20 18 16 22 22 C 1.53378 * 109.71892 * 288.27379 * 21 20 18 23 23 C 1.50888 * 108.19741 * 50.53669 * 22 21 20 24 24 C 1.34566 * 128.32517 * 163.25228 * 23 22 21 25 25 N 1.35205 * 107.61787 * 180.29753 * 24 23 22 26 26 H 0.97001 * 126.00525 * 179.97438 * 25 24 23 27 27 N 1.40316 * 107.98861 * 359.96022 * 25 24 23 28 28 C 1.30124 * 108.12610 * 359.95894 * 27 25 24 29 29 C 1.46735 * 108.81958 * 24.60514 * 15 14 13 30 30 H 1.09002 * 111.32988 * 236.12451 * 29 15 14 31 31 C 1.47816 * 125.18549 * 0.61879 * 9 7 2 32 32 H 0.96997 * 120.00481 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.98533 * 42.48470 * 10 9 7 34 34 H 1.08993 * 110.02578 * 281.18863 * 10 9 7 35 35 H 1.09011 * 110.96471 * 167.76544 * 13 11 10 36 36 H 1.08998 * 110.99826 * 44.02487 * 13 11 10 37 37 H 1.08997 * 110.37411 * 203.98492 * 14 13 11 38 38 H 1.09006 * 110.46314 * 81.69619 * 14 13 11 39 39 H 1.09000 * 109.43027 * 290.41196 * 20 18 16 40 40 H 1.09002 * 109.42780 * 50.25023 * 20 18 16 41 41 H 1.08999 * 109.42517 * 168.19569 * 21 20 18 42 42 H 1.09001 * 109.38870 * 48.32293 * 21 20 18 43 43 H 1.09001 * 109.71816 * 290.86429 * 22 21 20 44 44 H 1.09003 * 109.72425 * 170.21508 * 22 21 20 45 45 H 1.08001 * 126.19976 * 0.24893 * 24 23 22 46 46 H 1.08998 * 110.40958 * 61.92891 * 31 9 7 47 47 H 1.09000 * 109.71009 * 300.84643 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9381 -3.7211 0.0005 11 6 0.8513 -4.7113 0.4605 12 1 0.8937 -4.9580 1.5213 13 6 0.8953 -5.9635 -0.4539 14 6 0.2624 -5.4235 -1.7600 15 7 -0.8010 -4.5063 -1.3123 16 6 -1.8960 -4.1689 -2.0220 17 8 -2.7100 -3.4020 -1.5530 18 6 -2.1089 -4.7447 -3.3983 19 1 -2.1730 -5.8311 -3.3364 20 6 -3.4028 -4.1825 -3.9999 21 6 -3.4981 -4.5720 -5.4768 22 6 -2.4739 -3.7710 -6.2904 23 6 -1.1297 -3.9045 -5.6181 24 6 0.0876 -3.6397 -6.1267 25 7 1.0001 -3.9112 -5.1666 26 1 1.9616 -3.8140 -5.2499 27 7 0.3117 -4.3579 -4.0284 28 6 -0.9614 -4.3527 -4.2973 29 6 -0.4724 -4.0212 0.0330 30 1 -1.2768 -4.2315 0.7378 31 6 -0.1465 -2.5218 -0.0130 32 1 -0.4851 0.8400 -0.0004 33 1 2.7801 -3.7442 0.6924 34 1 2.2744 -3.9773 -1.0040 35 1 0.2965 -6.7729 -0.0360 36 1 1.9221 -6.2878 -0.6231 37 1 -0.1622 -6.2413 -2.3422 38 1 1.0049 -4.8849 -2.3489 39 1 -4.2592 -4.5889 -3.4618 40 1 -3.4019 -3.0962 -3.9109 41 1 -4.5014 -4.3570 -5.8444 42 1 -3.2932 -5.6372 -5.5841 43 1 -2.7676 -2.7217 -6.3203 44 1 -2.4188 -4.1670 -7.3045 45 1 0.2980 -3.2769 -7.1219 46 1 -0.5596 -2.0825 -0.9210 47 1 -0.5687 -2.0261 0.8611 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075792108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = 56.314244 kcal Electronic energy + Delta-G solvation = -30413.071358 eV Core-core repulsion = 26597.234307 eV Total energy + Delta-G solvation = -3815.837052 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.58501 -41.36827 -39.49281 -37.09709 -36.49306 -34.16854 -33.12626 -32.38604 -31.38841 -30.51152 -29.66170 -27.89828 -26.61396 -25.71547 -23.83397 -22.94170 -22.68650 -22.05614 -20.84703 -20.10574 -19.43402 -18.94626 -18.56211 -18.06000 -17.03211 -16.91361 -16.56431 -15.98006 -15.61668 -15.54445 -15.17881 -15.04068 -14.72381 -14.45814 -14.35186 -14.06848 -13.95586 -13.64243 -13.50990 -13.35034 -13.04857 -13.00366 -12.87385 -12.84331 -12.52688 -12.17058 -12.08638 -11.89854 -11.86996 -11.74140 -11.65172 -11.54480 -11.44765 -11.18291 -10.79300 -10.73705 -10.27585 -9.41473 -9.28447 -8.92389 -7.86067 -5.24538 0.99991 1.37046 1.40007 1.50394 1.52418 1.83879 2.06353 2.17034 2.44527 3.30161 3.34384 3.52731 3.58415 3.64515 3.80789 3.87894 4.00404 4.03132 4.14973 4.29426 4.37095 4.42947 4.48078 4.53555 4.55449 4.64091 4.68401 4.80557 4.85369 4.90517 4.92188 4.95520 5.08967 5.13819 5.16194 5.24373 5.29721 5.35666 5.38004 5.40474 5.46032 5.51676 5.64477 5.78123 5.78532 6.14366 6.53504 6.68860 6.73603 7.03196 7.24053 7.74827 8.39413 9.22694 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011765 B = 0.004908 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.359002 B = 5703.800939 C = 6376.941910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.074 4.074 3 Si 0.980 3.020 4 H -0.257 1.257 5 H -0.297 1.297 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.088 0.912 9 N -0.622 5.622 10 C 0.142 3.858 11 C -0.095 4.095 12 H 0.116 0.884 13 C -0.110 4.110 14 C 0.097 3.903 15 N -0.592 5.592 16 C 0.519 3.481 17 O -0.587 6.587 18 C -0.012 4.012 19 H 0.137 0.863 20 C -0.096 4.096 21 C -0.106 4.106 22 C -0.039 4.039 23 C -0.253 4.253 24 C 0.072 3.928 25 N -0.481 5.481 26 H 0.448 0.552 27 N -0.298 5.298 28 C 0.064 3.936 29 C 0.114 3.886 30 H 0.072 0.928 31 C 0.204 3.796 32 H 0.241 0.759 33 H 0.044 0.956 34 H 0.025 0.975 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.216 0.784 46 H -0.005 1.005 47 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.519 -17.716 -14.783 23.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.266 4.266 3 Si 0.808 3.192 4 H -0.181 1.181 5 H -0.225 1.225 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.105 0.895 9 N -0.349 5.349 10 C 0.017 3.983 11 C -0.115 4.115 12 H 0.134 0.866 13 C -0.148 4.148 14 C -0.025 4.025 15 N -0.323 5.323 16 C 0.307 3.693 17 O -0.467 6.467 18 C -0.034 4.034 19 H 0.155 0.845 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.078 4.078 23 C -0.264 4.264 24 C -0.075 4.075 25 N -0.190 5.190 26 H 0.294 0.706 27 N -0.121 5.121 28 C -0.103 4.103 29 C 0.009 3.991 30 H 0.090 0.910 31 C 0.078 3.922 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.114 0.886 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.232 0.768 46 H 0.013 0.987 47 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -0.116 -17.351 -13.727 22.125 hybrid contribution 0.096 2.099 -0.134 2.106 sum -0.021 -15.252 -13.861 20.609 Atomic orbital electron populations 1.70316 1.06690 1.24805 1.58474 1.25777 0.96457 1.01497 1.02901 0.84981 0.78422 0.79244 0.76539 1.18122 1.22472 1.21823 1.19530 0.91017 0.83695 1.42513 0.89450 1.44797 1.01697 1.01551 1.86844 1.21449 0.94970 0.84015 0.97822 1.23102 0.91730 0.95408 1.01256 0.86578 1.22854 1.03114 0.95608 0.93260 1.22932 0.90237 0.92076 0.97232 1.48366 1.21671 1.45920 1.16387 1.20741 0.80116 0.80900 0.87498 1.90685 1.46275 1.37422 1.72365 1.19910 0.93296 1.02709 0.87524 0.84549 1.21416 0.94135 1.00229 0.97652 1.21555 1.00068 1.00954 0.91749 1.20080 0.88615 1.00165 0.98897 1.20437 0.97373 1.13798 0.94822 1.22683 0.88484 0.99583 0.96732 1.46582 1.10049 1.53153 1.09216 0.70610 1.77235 1.05954 1.22363 1.06534 1.22032 0.91991 1.00898 0.95394 1.22379 0.97551 0.94665 0.84510 0.91037 1.20863 0.83906 0.90769 0.96703 0.94930 0.93760 0.95742 0.88622 0.87481 0.89731 0.88868 0.90118 0.94165 0.89155 0.89998 0.92183 0.88229 0.76770 0.98680 0.98157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.16 10.24 21.65 0.22 -63.93 16 2 C -0.07 -4.56 5.48 84.86 0.47 -4.09 16 3 Si 0.98 48.99 29.55 68.60 2.03 51.02 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 6 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 7 C -0.24 -14.24 10.25 84.03 0.86 -13.38 16 8 H 0.09 4.88 7.83 -2.91 -0.02 4.86 16 9 N -0.62 -34.51 3.41 -695.09 -2.37 -36.88 16 10 C 0.14 5.93 6.48 86.70 0.56 6.49 16 11 C -0.10 -3.24 4.30 -8.93 -0.04 -3.28 16 12 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 13 C -0.11 -2.68 6.36 31.95 0.20 -2.47 16 14 C 0.10 2.89 4.45 86.84 0.39 3.27 16 15 N -0.59 -23.04 2.94 -786.12 -2.32 -25.35 16 16 C 0.52 21.39 6.74 87.66 0.59 21.98 16 17 O -0.59 -29.97 15.69 -3.02 -0.05 -30.02 16 18 C -0.01 -0.35 2.24 -12.08 -0.03 -0.38 16 19 H 0.14 3.16 7.87 -2.39 -0.02 3.14 16 20 C -0.10 -2.59 4.60 30.73 0.14 -2.45 16 21 C -0.11 -1.89 5.87 30.73 0.18 -1.71 16 22 C -0.04 -0.73 6.28 30.03 0.19 -0.54 16 23 C -0.25 -6.18 5.89 -20.10 -0.12 -6.30 16 24 C 0.07 1.45 11.95 83.33 1.00 2.44 16 25 N -0.48 -11.59 7.37 -57.88 -0.43 -12.01 16 26 H 0.45 8.26 8.96 -213.18 -1.91 6.35 16 27 N -0.30 -9.36 8.14 -47.14 -0.38 -9.74 16 28 C 0.06 1.95 6.19 43.44 0.27 2.22 16 29 C 0.11 4.95 3.57 45.90 0.16 5.11 16 30 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 31 C 0.20 11.68 4.96 86.30 0.43 12.11 16 32 H 0.24 15.90 8.31 -92.71 -0.77 15.13 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.02 1.01 6.60 -2.39 -0.02 1.00 16 35 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.11 2.09 8.09 -2.39 -0.02 2.07 16 37 H 0.08 2.07 7.42 -2.39 -0.02 2.06 16 38 H 0.09 3.16 4.71 -2.38 -0.01 3.15 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.39 7.77 -2.39 -0.02 1.37 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 43 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 46 H -0.01 -0.34 6.68 -2.39 -0.02 -0.36 16 47 H 0.00 0.02 7.30 -2.39 -0.02 0.00 16 Total: -1.00 -90.08 357.14 1.04 -89.04 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.92 Total: 18.85 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 5.25 Total: 19.03 kcal Atomic # 7 Polarization: -142.65 SS G_CDS: -5.27 Total: -147.92 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.05 Total: -30.02 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.02 kcal Total: -90.08 1.04 -89.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075792108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.354 kcal (2) G-P(sol) polarization free energy of solvation -90.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds