Wall clock time and date at job start Tue Mar 31 2020 06:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48499 * 109.46952 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47038 * 300.00040 * 3 2 1 6 6 H 1.48507 * 109.46900 * 60.00164 * 3 2 1 7 7 C 1.38812 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99590 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.46382 * 125.49411 * 180.31615 * 9 7 2 11 11 C 1.53751 * 108.45242 * 181.42426 * 10 9 7 12 12 H 1.08992 * 113.83435 * 250.87626 * 11 10 9 13 13 C 1.55167 * 108.31023 * 123.93913 * 11 10 9 14 14 C 1.54858 * 101.73782 * 285.38305 * 13 11 10 15 15 N 1.47408 * 104.81777 * 322.77389 * 14 13 11 16 16 C 1.34779 * 125.59050 * 204.39950 * 15 14 13 17 17 O 1.21275 * 120.00045 * 180.02562 * 16 15 14 18 18 C 1.50694 * 119.99685 * 0.02562 * 16 15 14 19 19 H 1.09005 * 109.52990 * 59.92060 * 18 16 15 20 20 C 1.53117 * 109.49871 * 180.02562 * 18 16 15 21 21 C 1.53288 * 109.70513 * 189.87029 * 20 18 16 22 22 N 1.46473 * 108.68597 * 309.22030 * 21 20 18 23 23 C 1.34412 * 128.43858 * 197.34266 * 22 21 20 24 24 N 1.30783 * 108.55081 * 180.02562 * 23 22 21 25 25 C 1.34430 * 109.32033 * 359.67863 * 24 23 22 26 26 C 1.33863 * 107.79731 * 0.37709 * 25 24 23 27 27 C 1.50707 * 128.67885 * 179.64828 * 26 25 24 28 28 C 1.46714 * 108.82054 * 24.66160 * 15 14 13 29 29 H 1.09002 * 111.52946 * 235.83787 * 28 15 14 30 30 C 1.46712 * 125.31237 * 359.97438 * 9 7 2 31 31 H 0.97003 * 119.99731 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.93051 * 61.43739 * 10 9 7 33 33 H 1.08999 * 109.21503 * 300.99372 * 10 9 7 34 34 H 1.09000 * 110.97395 * 167.27357 * 13 11 10 35 35 H 1.09004 * 110.97586 * 43.49678 * 13 11 10 36 36 H 1.08998 * 110.37380 * 203.93861 * 14 13 11 37 37 H 1.09004 * 110.36815 * 81.60694 * 14 13 11 38 38 H 1.09000 * 109.43597 * 69.79271 * 20 18 16 39 39 H 1.09007 * 109.39184 * 309.91291 * 20 18 16 40 40 H 1.09002 * 109.59755 * 189.45894 * 21 20 18 41 41 H 1.08994 * 109.73476 * 69.05881 * 21 20 18 42 42 H 1.08002 * 125.72228 * 359.77887 * 23 22 21 43 43 H 1.08002 * 126.09760 * 180.19325 * 25 24 23 44 44 H 1.08996 * 109.74808 * 76.13068 * 27 26 25 45 45 H 1.09001 * 109.78742 * 315.43305 * 27 26 25 46 46 H 1.08995 * 109.98903 * 42.72484 * 30 9 7 47 47 H 1.09007 * 110.01592 * 281.44174 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.9328 -3.7200 0.0055 11 6 0.8081 -4.7677 -0.0330 12 1 0.6831 -5.3141 0.9017 13 6 1.0449 -5.6923 -1.2564 14 6 0.6189 -4.7766 -2.4304 15 7 -0.5348 -4.0166 -1.9163 16 6 -1.5057 -3.4607 -2.6678 17 8 -2.4116 -2.8543 -2.1364 18 6 -1.4655 -3.5926 -4.1685 19 1 -1.4913 -4.6474 -4.4423 20 6 -2.6743 -2.8764 -4.7770 21 6 -2.7761 -3.2113 -6.2694 22 7 -1.4733 -2.9709 -6.8942 23 6 -1.1867 -2.8250 -8.1993 24 7 0.1002 -2.6273 -8.3230 25 6 0.6703 -2.6340 -7.1056 26 6 -0.2944 -2.8506 -6.2032 27 6 -0.1759 -2.9552 -4.7045 28 6 -0.4495 -3.9592 -0.4528 29 1 -1.3521 -4.3510 0.0162 30 6 -0.1352 -2.5239 0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 2.5287 -3.8526 0.9085 33 1 2.5677 -3.8288 -0.8738 34 1 0.4128 -6.5787 -1.2037 35 1 2.0961 -5.9688 -1.3389 36 1 0.3248 -5.3762 -3.2919 37 1 1.4305 -4.0998 -2.6975 38 1 -2.5578 -1.7997 -4.6540 39 1 -3.5820 -3.2032 -4.2694 40 1 -3.5285 -2.5756 -6.7362 41 1 -3.0536 -4.2580 -6.3936 42 1 -1.8989 -2.8681 -9.0100 43 1 1.7199 -2.4929 -6.8937 44 1 -0.0501 -1.9614 -4.2748 45 1 0.6790 -3.5795 -4.4446 46 1 -0.5764 -1.8088 -0.6938 47 1 -0.5248 -2.3566 1.0048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075960788.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:28 Heat of formation + Delta-G solvation = 64.975374 kcal Electronic energy + Delta-G solvation = -29926.574845 eV Core-core repulsion = 26111.113368 eV Total energy + Delta-G solvation = -3815.461477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.35832 -40.31366 -38.25611 -36.07488 -34.82042 -33.21687 -32.06169 -30.85738 -30.50824 -29.06744 -27.85522 -26.38093 -24.82237 -24.63549 -23.26080 -22.04566 -21.48808 -20.63223 -19.61870 -19.19592 -18.41131 -17.25461 -17.09545 -16.63450 -16.07744 -15.57889 -15.10901 -14.65854 -14.54902 -14.10661 -14.01900 -13.83356 -13.70677 -13.53965 -13.19349 -13.12904 -12.99057 -12.51676 -12.22948 -12.13301 -11.84416 -11.69035 -11.57385 -11.25975 -11.17539 -11.03519 -10.98086 -10.74415 -10.54123 -10.30439 -10.12667 -10.00553 -9.81379 -9.69328 -9.54951 -9.30815 -8.61491 -8.32726 -8.13675 -6.80554 -5.64353 -3.05279 2.04619 2.72309 2.96931 3.16980 3.32489 3.40336 3.45566 3.48486 4.25555 4.44509 4.48588 4.51099 4.62676 4.74325 4.75470 4.81629 4.98735 4.99977 5.09607 5.16495 5.32657 5.39701 5.47468 5.49845 5.54104 5.62120 5.70674 5.72748 5.75477 5.82348 5.85803 5.93508 6.00686 6.07998 6.21116 6.31486 6.35620 6.49696 6.56431 6.64500 6.74475 6.84470 7.18511 7.46731 7.66300 7.92258 7.98573 8.05410 8.38983 8.57608 9.23569 9.85244 10.47643 11.40366 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.004500 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.337084 B = 6220.842745 C = 7255.605358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.143 3.857 11 C -0.110 4.110 12 H 0.096 0.904 13 C -0.125 4.125 14 C 0.100 3.900 15 N -0.595 5.595 16 C 0.534 3.466 17 O -0.530 6.530 18 C -0.103 4.103 19 H 0.094 0.906 20 C -0.115 4.115 21 C 0.105 3.895 22 N -0.457 5.457 23 C 0.177 3.823 24 N -0.498 5.498 25 C -0.026 4.026 26 C -0.012 4.012 27 C -0.042 4.042 28 C 0.114 3.886 29 H 0.077 0.923 30 C 0.155 3.845 31 H 0.252 0.748 32 H 0.020 0.980 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.202 0.798 43 H 0.170 0.830 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.106 0.894 47 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 -13.230 -10.766 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.017 3.983 11 C -0.129 4.129 12 H 0.114 0.886 13 C -0.163 4.163 14 C -0.023 4.023 15 N -0.329 5.329 16 C 0.322 3.678 17 O -0.406 6.406 18 C -0.125 4.125 19 H 0.112 0.888 20 C -0.153 4.153 21 C -0.017 4.017 22 N -0.141 5.141 23 C -0.105 4.105 24 N -0.216 5.216 25 C -0.173 4.173 26 C -0.126 4.126 27 C -0.080 4.080 28 C 0.010 3.990 29 H 0.095 0.905 30 C 0.030 3.970 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.219 0.781 43 H 0.187 0.813 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.124 0.876 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -4.362 -12.543 -11.229 17.390 hybrid contribution 0.050 0.736 0.787 1.078 sum -4.312 -11.807 -10.442 16.341 Atomic orbital electron populations 1.69922 1.04744 1.24772 1.56688 1.24808 0.95657 0.97651 1.02153 0.86083 0.78696 0.83939 0.77277 1.20502 1.21769 1.21750 1.19032 0.90386 0.82276 1.44020 0.90462 1.44132 1.01573 0.99795 1.86982 1.21115 0.93424 0.85775 0.98033 1.23062 0.96050 0.96069 0.97767 0.88620 1.22806 1.01746 0.97226 0.94494 1.22396 0.89319 0.93886 0.96686 1.48239 1.23814 1.53448 1.07388 1.19777 0.81378 0.78724 0.87959 1.90730 1.35170 1.40846 1.73828 1.21329 0.96666 1.01490 0.92989 0.88789 1.21701 0.99076 1.02687 0.91862 1.22048 0.82744 1.02490 0.94406 1.45474 1.08009 1.53238 1.07422 1.24730 0.94551 1.06079 0.85142 1.70479 1.05354 1.20078 1.25714 1.21839 0.99499 1.08147 0.87767 1.21126 0.86101 1.10189 0.95232 1.20330 0.97094 1.03358 0.87211 1.22673 0.96822 1.00031 0.79480 0.90508 1.21679 0.84740 0.90651 0.99941 0.93745 0.96247 0.95782 0.91177 0.89959 0.91396 0.90650 0.89798 0.88373 0.88753 0.89697 0.78114 0.81318 0.88769 0.88600 0.87583 0.96230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.25 10.17 55.49 0.56 -26.68 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.29 10.25 -15.06 -0.15 -6.44 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -14.87 3.37 -172.23 -0.58 -15.45 16 10 C 0.14 2.76 6.39 -3.72 -0.02 2.74 16 11 C -0.11 -1.72 4.27 -87.87 -0.38 -2.09 16 12 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.12 -1.47 6.31 -24.60 -0.16 -1.63 16 14 C 0.10 1.31 4.68 -2.57 -0.01 1.30 16 15 N -0.60 -9.94 3.00 -162.26 -0.49 -10.43 16 16 C 0.53 9.23 6.81 -10.99 -0.07 9.15 16 17 O -0.53 -11.30 15.55 5.56 0.09 -11.22 16 18 C -0.10 -1.32 1.89 -91.44 -0.17 -1.49 16 19 H 0.09 1.01 7.82 -51.93 -0.41 0.60 16 20 C -0.12 -1.34 4.66 -26.52 -0.12 -1.46 16 21 C 0.11 0.91 7.00 -3.91 -0.03 0.88 16 22 N -0.46 -5.22 3.13 -114.08 -0.36 -5.58 16 23 C 0.18 2.03 12.66 -90.71 -1.15 0.89 16 24 N -0.50 -7.21 11.27 -14.87 -0.17 -7.38 16 25 C -0.03 -0.36 11.84 -17.95 -0.21 -0.57 16 26 C -0.01 -0.16 6.57 -81.73 -0.54 -0.70 16 27 C -0.04 -0.56 5.21 -27.61 -0.14 -0.70 16 28 C 0.11 2.13 3.65 -66.21 -0.24 1.89 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 C 0.16 3.82 5.17 -3.53 -0.02 3.80 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.45 6.78 -51.93 -0.35 0.10 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.85 7.96 -51.93 -0.41 0.43 16 36 H 0.07 0.70 7.23 -51.93 -0.38 0.32 16 37 H 0.08 1.08 6.69 -51.93 -0.35 0.73 16 38 H 0.08 1.17 8.11 -51.93 -0.42 0.74 16 39 H 0.10 1.11 7.77 -51.92 -0.40 0.70 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 44 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 45 H 0.10 1.17 5.52 -51.93 -0.29 0.89 16 46 H 0.11 3.03 5.31 -51.93 -0.28 2.75 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -35.01 360.77 -11.10 -46.11 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.05 Total: 2.64 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -3.52 Total: 5.29 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: -1.03 Total: -65.51 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.01 -11.10 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075960788.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.089 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds