Wall clock time and date at job start Tue Mar 31 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00027 * 2 1 4 4 H 1.48504 * 109.46913 * 270.00450 * 3 2 1 5 5 H 1.48504 * 109.47106 * 30.00087 * 3 2 1 6 6 H 1.48492 * 109.47074 * 150.00122 * 3 2 1 7 7 C 1.38803 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00172 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00161 * 359.97438 * 7 2 1 10 10 C 1.48055 * 125.29517 * 180.88656 * 9 7 2 11 11 C 1.53759 * 107.58438 * 181.70672 * 10 9 7 12 12 H 1.09000 * 113.19819 * 250.04321 * 11 10 9 13 13 C 1.55164 * 108.31140 * 123.57503 * 11 10 9 14 14 C 1.54860 * 101.73437 * 284.54932 * 13 11 10 15 15 N 1.47406 * 104.82097 * 322.77440 * 14 13 11 16 16 C 1.34771 * 125.59174 * 204.39708 * 15 14 13 17 17 O 1.21279 * 119.99913 * 185.21658 * 16 15 14 18 18 C 1.50703 * 119.99887 * 5.22343 * 16 15 14 19 19 H 1.08997 * 109.49704 * 332.30644 * 18 16 15 20 20 C 1.53115 * 109.49888 * 212.24065 * 18 16 15 21 21 C 1.53279 * 109.70616 * 170.13414 * 20 18 16 22 22 N 1.46463 * 108.69353 * 50.76055 * 21 20 18 23 23 C 1.34413 * 128.44036 * 162.67111 * 22 21 20 24 24 N 1.30784 * 108.55302 * 180.18169 * 23 22 21 25 25 C 1.34431 * 109.32044 * 359.94941 * 24 23 22 26 26 C 1.33862 * 107.79669 * 359.97438 * 25 24 23 27 27 C 1.50712 * 128.67969 * 180.13447 * 26 25 24 28 28 C 1.46714 * 108.82039 * 24.66315 * 15 14 13 29 29 H 1.08999 * 111.52845 * 235.84019 * 28 15 14 30 30 C 1.46717 * 125.31023 * 359.97438 * 9 7 2 31 31 H 0.97003 * 120.00030 * 359.97438 * 1 2 3 32 32 H 1.09005 * 110.66988 * 61.81796 * 10 9 7 33 33 H 1.09001 * 109.34188 * 300.83764 * 10 9 7 34 34 H 1.09001 * 110.97252 * 166.44031 * 13 11 10 35 35 H 1.08999 * 111.00949 * 42.67544 * 13 11 10 36 36 H 1.09000 * 110.37168 * 203.93988 * 14 13 11 37 37 H 1.09005 * 110.36913 * 81.61487 * 14 13 11 38 38 H 1.09001 * 109.43386 * 50.05676 * 20 18 16 39 39 H 1.09003 * 109.39355 * 290.18192 * 20 18 16 40 40 H 1.09002 * 109.59898 * 290.99729 * 21 20 18 41 41 H 1.09007 * 109.73107 * 170.60671 * 21 20 18 42 42 H 1.07993 * 125.72464 * 0.44927 * 23 22 21 43 43 H 1.08000 * 126.10080 * 179.97438 * 25 24 23 44 44 H 1.09007 * 109.74177 * 283.86983 * 27 26 25 45 45 H 1.09000 * 109.74908 * 44.58267 * 27 26 25 46 46 H 1.08997 * 109.98571 * 42.73295 * 30 9 7 47 47 H 1.09006 * 109.98336 * 281.42522 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.9442 -3.7330 0.0176 11 6 0.8080 -4.7677 -0.0331 12 1 0.6830 -5.3142 0.9017 13 6 1.0448 -5.6922 -1.2564 14 6 0.6188 -4.7766 -2.4304 15 7 -0.5349 -4.0166 -1.9163 16 6 -1.5057 -3.4606 -2.6678 17 8 -2.3593 -2.7754 -2.1456 18 6 -1.5307 -3.6906 -4.1569 19 1 -0.5171 -3.8722 -4.5140 20 6 -2.1049 -2.4549 -4.8553 21 6 -1.9075 -2.5790 -6.3703 22 7 -2.4096 -3.8848 -6.8037 23 6 -2.7267 -4.2878 -8.0462 24 7 -3.1390 -5.5276 -7.9890 25 6 -3.0968 -5.9520 -6.7142 26 6 -2.6436 -4.9421 -5.9615 27 6 -2.4111 -4.9074 -4.4728 28 6 -0.4496 -3.9591 -0.4528 29 1 -1.3522 -4.3509 0.0162 30 6 -0.1353 -2.5238 0.0005 31 1 -0.4850 0.8401 0.0004 32 1 2.5309 -3.8744 0.9254 33 1 2.5855 -3.8472 -0.8564 34 1 0.4127 -6.5787 -1.2037 35 1 2.0958 -5.9693 -1.3393 36 1 0.3246 -5.3761 -3.2918 37 1 1.4304 -4.0998 -2.6976 38 1 -1.5920 -1.5633 -4.4946 39 1 -3.1692 -2.3756 -4.6336 40 1 -0.8470 -2.4974 -6.6087 41 1 -2.4585 -1.7880 -6.8792 42 1 -2.6494 -3.6897 -8.9420 43 1 -3.3784 -6.9328 -6.3604 44 1 -3.3650 -4.8160 -3.9532 45 1 -1.9055 -5.8202 -4.1576 46 1 -0.5765 -1.8088 -0.6939 47 1 -0.5243 -2.3567 1.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075960793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:31 Heat of formation + Delta-G solvation = 63.820454 kcal Electronic energy + Delta-G solvation = -29573.061344 eV Core-core repulsion = 25757.549786 eV Total energy + Delta-G solvation = -3815.511558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44122 -40.26136 -38.25339 -36.08789 -34.72016 -33.21436 -32.13313 -30.84290 -30.60865 -29.01696 -27.96518 -26.39859 -24.85528 -24.64624 -23.27484 -22.10366 -21.55610 -20.66950 -19.68298 -19.08248 -18.42133 -17.30138 -17.16792 -16.57438 -16.15633 -15.61171 -15.10281 -14.64637 -14.49227 -14.17728 -14.09026 -13.93829 -13.78968 -13.52473 -13.27436 -13.17733 -12.95721 -12.55999 -12.24472 -12.14215 -11.90769 -11.76494 -11.59863 -11.32031 -11.17693 -11.04160 -11.01541 -10.75369 -10.53621 -10.34226 -10.16805 -10.08088 -9.83007 -9.69073 -9.62601 -9.29379 -8.62290 -8.44256 -8.13017 -6.82184 -5.64671 -3.05729 1.95152 2.66088 2.96116 3.06246 3.29367 3.37547 3.42721 3.45411 4.26169 4.41581 4.44653 4.47339 4.57165 4.72832 4.75066 4.79097 4.97748 4.99390 5.09327 5.13222 5.26933 5.32196 5.45964 5.47127 5.49826 5.57199 5.61753 5.66101 5.72883 5.75760 5.83792 5.85520 5.99910 6.01642 6.21114 6.26331 6.29548 6.49009 6.55418 6.62843 6.63393 6.82797 7.09730 7.46457 7.63143 7.92084 7.95835 7.99349 8.38674 8.58748 9.22451 9.82837 10.46447 11.39690 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014724 B = 0.003736 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.162387 B = 7492.442266 C = 8644.485731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.007 4.007 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.139 3.861 11 C -0.110 4.110 12 H 0.095 0.905 13 C -0.124 4.124 14 C 0.102 3.898 15 N -0.596 5.596 16 C 0.534 3.466 17 O -0.526 6.526 18 C -0.105 4.105 19 H 0.091 0.909 20 C -0.117 4.117 21 C 0.104 3.896 22 N -0.454 5.454 23 C 0.180 3.820 24 N -0.499 5.499 25 C -0.026 4.026 26 C -0.016 4.016 27 C -0.031 4.031 28 C 0.115 3.885 29 H 0.077 0.923 30 C 0.156 3.844 31 H 0.252 0.748 32 H 0.023 0.977 33 H 0.027 0.973 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.203 0.797 43 H 0.168 0.832 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.109 0.891 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 -11.590 -11.062 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.013 3.987 11 C -0.130 4.130 12 H 0.113 0.887 13 C -0.162 4.162 14 C -0.021 4.021 15 N -0.330 5.330 16 C 0.321 3.679 17 O -0.401 6.401 18 C -0.127 4.127 19 H 0.109 0.891 20 C -0.155 4.155 21 C -0.018 4.018 22 N -0.138 5.138 23 C -0.102 4.102 24 N -0.217 5.217 25 C -0.174 4.174 26 C -0.131 4.131 27 C -0.070 4.070 28 C 0.011 3.989 29 H 0.095 0.905 30 C 0.031 3.969 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.220 0.780 43 H 0.185 0.815 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.127 0.873 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.820 -11.256 -11.476 16.320 hybrid contribution 0.938 1.431 0.701 1.849 sum -1.882 -9.825 -10.775 14.703 Atomic orbital electron populations 1.69916 1.04693 1.24842 1.56633 1.24811 0.95682 0.97613 1.02287 0.86144 0.78565 0.83690 0.77487 1.21720 1.21645 1.20760 1.19003 0.90361 0.82387 1.44035 0.90603 1.44548 1.01460 0.99627 1.87121 1.21453 0.93392 0.85758 0.98066 1.23048 0.96066 0.96109 0.97752 0.88702 1.22794 1.01709 0.97235 0.94468 1.22303 0.89183 0.93913 0.96739 1.48268 1.23774 1.53542 1.07404 1.19759 0.81012 0.79424 0.87689 1.90749 1.38535 1.37160 1.73689 1.21340 1.01303 0.96516 0.93508 0.89056 1.21718 1.03916 0.98557 0.91276 1.22082 1.00591 0.82404 0.96724 1.45498 1.48530 1.11896 1.07844 1.24763 1.03525 0.93643 0.88242 1.70486 1.20538 1.09524 1.21180 1.21797 1.07025 0.99563 0.88979 1.21065 1.09017 0.89298 0.93691 1.20101 1.00688 0.97734 0.88469 1.22658 0.96744 1.00038 0.79487 0.90472 1.21680 0.84536 0.90780 0.99917 0.93707 0.95915 0.95553 0.91072 0.90048 0.91400 0.91033 0.88439 0.89618 0.89414 0.88554 0.78016 0.81453 0.89227 0.89136 0.87343 0.96344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.14 10.17 55.49 0.56 -26.58 16 2 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.32 10.26 -15.06 -0.15 -6.48 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -15.01 3.41 -170.87 -0.58 -15.60 16 10 C 0.14 2.70 6.53 -2.79 -0.02 2.68 16 11 C -0.11 -1.73 4.21 -87.87 -0.37 -2.10 16 12 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.12 -1.47 6.31 -24.61 -0.16 -1.62 16 14 C 0.10 1.35 5.90 -2.57 -0.02 1.33 16 15 N -0.60 -10.02 3.01 -162.25 -0.49 -10.51 16 16 C 0.53 9.22 6.52 -10.99 -0.07 9.15 16 17 O -0.53 -11.35 15.90 5.56 0.09 -11.26 16 18 C -0.10 -1.33 2.01 -91.46 -0.18 -1.51 16 19 H 0.09 1.08 6.84 -51.93 -0.35 0.72 16 20 C -0.12 -1.40 4.71 -26.53 -0.12 -1.53 16 21 C 0.10 0.94 7.00 -3.92 -0.03 0.91 16 22 N -0.45 -4.88 3.13 -114.09 -0.36 -5.24 16 23 C 0.18 1.94 12.66 -90.71 -1.15 0.79 16 24 N -0.50 -6.58 11.27 -14.87 -0.17 -6.75 16 25 C -0.03 -0.32 11.84 -17.95 -0.21 -0.53 16 26 C -0.02 -0.19 6.57 -81.73 -0.54 -0.72 16 27 C -0.03 -0.35 5.61 -27.63 -0.15 -0.50 16 28 C 0.11 2.15 3.69 -66.20 -0.24 1.91 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 C 0.16 3.85 5.15 -3.53 -0.02 3.84 16 31 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.03 0.50 6.83 -51.93 -0.35 0.14 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.84 7.94 -51.93 -0.41 0.43 16 36 H 0.07 0.70 7.27 -51.93 -0.38 0.33 16 37 H 0.07 1.06 7.54 -51.93 -0.39 0.67 16 38 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 39 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.20 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.09 1.06 8.11 -51.92 -0.42 0.64 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.11 3.10 5.15 -51.93 -0.27 2.83 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -34.99 365.48 -11.19 -46.18 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.19 Total: 1.91 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.53 Total: 5.30 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -1.03 Total: -64.67 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.99 -11.19 -46.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075960793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.000 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds