Wall clock time and date at job start Tue Mar 31 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99956 * 2 1 4 4 H 1.48502 * 109.46700 * 274.98813 * 3 2 1 5 5 H 1.48496 * 109.47109 * 34.98899 * 3 2 1 6 6 H 1.48497 * 109.46957 * 154.99148 * 3 2 1 7 7 C 1.38811 * 119.99611 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99445 * 176.79953 * 7 2 1 9 9 N 1.36932 * 120.00568 * 356.79473 * 7 2 1 10 10 C 1.48059 * 125.29779 * 192.94328 * 9 7 2 11 11 C 1.53746 * 107.58381 * 181.70721 * 10 9 7 12 12 H 1.09000 * 113.19995 * 250.04505 * 11 10 9 13 13 C 1.55170 * 108.31496 * 123.57390 * 11 10 9 14 14 C 1.54865 * 101.73159 * 284.55030 * 13 11 10 15 15 N 1.47407 * 104.81846 * 322.76908 * 14 13 11 16 16 C 1.34781 * 125.58891 * 204.40011 * 15 14 13 17 17 O 1.21282 * 119.99723 * 185.12953 * 16 15 14 18 18 C 1.50700 * 120.00041 * 4.86089 * 16 15 14 19 19 H 1.09005 * 109.43081 * 327.66325 * 18 16 15 20 20 C 1.53110 * 109.43168 * 207.80744 * 18 16 15 21 21 C 1.53497 * 109.30318 * 170.00886 * 20 18 16 22 22 C 1.50709 * 108.06211 * 48.70190 * 21 20 18 23 23 C 1.33859 * 128.68319 * 164.19850 * 22 21 20 24 24 N 1.34419 * 107.79970 * 180.16362 * 23 22 21 25 25 C 1.30793 * 109.32159 * 359.97438 * 24 23 22 26 26 N 1.34409 * 108.55072 * 359.93862 * 25 24 23 27 27 C 1.46469 * 128.44392 * 180.16739 * 26 25 24 28 28 C 1.46706 * 108.82169 * 24.66497 * 15 14 13 29 29 H 1.08999 * 111.52920 * 235.83556 * 28 15 14 30 30 C 1.46718 * 125.30972 * 12.03446 * 9 7 2 31 31 H 0.97001 * 119.99943 * 359.97438 * 1 2 3 32 32 H 1.08998 * 110.66815 * 61.81510 * 10 9 7 33 33 H 1.09004 * 109.33676 * 300.83342 * 10 9 7 34 34 H 1.08998 * 110.97221 * 166.44029 * 13 11 10 35 35 H 1.08995 * 111.00793 * 42.67054 * 13 11 10 36 36 H 1.09001 * 110.36625 * 203.93884 * 14 13 11 37 37 H 1.09000 * 110.37285 * 81.60435 * 14 13 11 38 38 H 1.08996 * 109.50075 * 289.95572 * 20 18 16 39 39 H 1.09001 * 109.49918 * 50.06262 * 20 18 16 40 40 H 1.08994 * 109.74470 * 289.05842 * 21 20 18 41 41 H 1.09004 * 109.78303 * 168.36490 * 21 20 18 42 42 H 1.07995 * 126.10070 * 0.13814 * 23 22 21 43 43 H 1.07999 * 125.72149 * 179.97438 * 25 24 23 44 44 H 1.09003 * 109.60335 * 42.94635 * 27 26 25 45 45 H 1.09004 * 109.59876 * 282.47525 * 27 26 25 46 46 H 1.08998 * 109.98506 * 42.72964 * 30 9 7 47 47 H 1.09004 * 109.98148 * 281.42868 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0102 -1.2022 0.0005 8 1 3.0890 -1.2029 -0.0517 9 7 1.3272 -2.3871 0.0674 10 6 1.9327 -3.7090 0.3467 11 6 0.8096 -4.7571 0.2835 12 1 0.5584 -5.1766 1.2577 13 6 1.2043 -5.8323 -0.7634 14 6 0.9426 -5.0862 -2.0950 15 7 -0.2665 -4.2810 -1.8448 16 6 -1.1260 -3.8432 -2.7861 17 8 -2.0401 -3.1081 -2.4778 18 6 -0.9477 -4.2622 -4.2227 19 1 0.1140 -4.3898 -4.4341 20 6 -1.5233 -3.1827 -5.1433 21 6 -1.1221 -3.4859 -6.5936 22 6 -1.4320 -4.9345 -6.8710 23 6 -1.5212 -5.5598 -8.0512 24 7 -1.8211 -6.8481 -7.8119 25 6 -1.9192 -7.0372 -6.5215 26 7 -1.6822 -5.8697 -5.8990 27 6 -1.6770 -5.5887 -4.4615 28 6 -0.3776 -4.0291 -0.4038 29 1 -1.3363 -4.3679 -0.0112 30 6 -0.1212 -2.5421 -0.1080 31 1 -0.4850 0.8401 0.0004 32 1 2.3921 -3.7207 1.3351 33 1 2.6846 -3.9290 -0.4112 34 1 0.5673 -6.7126 -0.6777 35 1 2.2557 -6.1030 -0.6680 36 1 0.7640 -5.7987 -2.9003 37 1 1.7852 -4.4394 -2.3395 38 1 -2.6101 -3.1754 -5.0605 39 1 -1.1291 -2.2088 -4.8529 40 1 -0.0553 -3.3057 -6.7259 41 1 -1.6898 -2.8510 -7.2739 42 1 -1.3781 -5.1095 -9.0223 43 1 -2.1511 -7.9743 -6.0373 44 1 -1.1607 -6.3908 -3.9340 45 1 -2.7025 -5.5114 -4.1004 46 1 -0.4627 -1.9317 -0.9440 47 1 -0.6404 -2.2488 0.8045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075966981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:57 Heat of formation + Delta-G solvation = 62.678494 kcal Electronic energy + Delta-G solvation = -29544.130219 eV Core-core repulsion = 25728.569142 eV Total energy + Delta-G solvation = -3815.561077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47488 -40.37200 -38.34680 -36.10623 -34.76275 -33.17651 -32.32085 -30.93320 -30.80868 -28.84874 -27.93411 -26.51219 -24.93589 -24.69227 -23.24073 -22.15246 -21.52867 -20.77844 -19.77560 -19.12414 -18.53305 -17.34183 -17.22516 -16.64516 -16.11643 -15.58037 -15.24256 -14.80738 -14.52886 -14.15701 -14.15152 -14.02236 -13.83129 -13.65436 -13.31585 -13.22834 -13.00448 -12.65978 -12.19707 -12.16729 -11.95915 -11.76615 -11.63242 -11.31060 -11.23227 -11.04367 -11.01962 -10.76400 -10.57850 -10.39636 -10.18716 -10.07011 -9.91713 -9.78367 -9.67012 -9.44837 -8.59044 -8.45025 -8.25406 -6.79905 -5.73205 -3.10151 1.93343 2.47988 2.84929 3.04634 3.21800 3.37446 3.42832 3.45368 4.23581 4.32788 4.36967 4.45738 4.54116 4.64714 4.66888 4.77808 4.94002 4.99327 5.03218 5.08064 5.20348 5.27780 5.40348 5.42400 5.45556 5.48043 5.61086 5.63780 5.69313 5.69453 5.79023 5.94038 5.95334 6.08367 6.13321 6.23147 6.24919 6.41451 6.48089 6.59828 6.61820 6.77832 7.05943 7.49046 7.58094 7.82097 7.88352 7.94029 8.29124 8.43331 9.19470 9.79520 10.45613 11.36841 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.003629 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.542037 B = 7712.990428 C = 8769.805808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.003 4.003 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.600 5.600 10 C 0.138 3.862 11 C -0.109 4.109 12 H 0.096 0.904 13 C -0.124 4.124 14 C 0.101 3.899 15 N -0.597 5.597 16 C 0.534 3.466 17 O -0.520 6.520 18 C -0.114 4.114 19 H 0.099 0.901 20 C -0.107 4.107 21 C -0.047 4.047 22 C -0.018 4.018 23 C -0.028 4.028 24 N -0.498 5.498 25 C 0.181 3.819 26 N -0.453 5.453 27 C 0.119 3.881 28 C 0.113 3.887 29 H 0.079 0.921 30 C 0.170 3.830 31 H 0.253 0.747 32 H 0.025 0.975 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.203 0.797 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 -14.635 -8.608 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.327 5.327 10 C 0.013 3.987 11 C -0.129 4.129 12 H 0.114 0.886 13 C -0.162 4.162 14 C -0.022 4.022 15 N -0.330 5.330 16 C 0.320 3.680 17 O -0.395 6.395 18 C -0.136 4.136 19 H 0.117 0.883 20 C -0.145 4.145 21 C -0.085 4.085 22 C -0.133 4.133 23 C -0.175 4.175 24 N -0.216 5.216 25 C -0.101 4.101 26 N -0.137 5.137 27 C -0.004 4.004 28 C 0.009 3.991 29 H 0.097 0.903 30 C 0.045 3.955 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.110 0.890 42 H 0.186 0.814 43 H 0.220 0.780 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.874 -14.581 -8.946 17.209 hybrid contribution 0.701 1.383 0.798 1.744 sum -1.173 -13.199 -8.148 15.555 Atomic orbital electron populations 1.69969 1.04868 1.25183 1.55759 1.24910 0.95674 0.97742 1.01678 0.86158 0.78716 0.83731 0.77492 1.21667 1.21585 1.20608 1.18956 0.90537 0.82275 1.44556 0.90735 1.44507 1.03249 1.01726 1.83209 1.21462 0.93460 0.86097 0.97709 1.23044 0.96227 0.95534 0.98050 0.88574 1.22800 1.01964 0.97334 0.94114 1.22329 0.88448 0.93684 0.97750 1.48326 1.24637 1.52649 1.07437 1.19602 0.82032 0.80815 0.85538 1.90767 1.32682 1.34636 1.81458 1.21547 1.02340 0.95469 0.94248 0.88325 1.21517 1.02212 0.98470 0.92270 1.20285 1.02391 0.88778 0.97060 1.21260 1.09729 0.93369 0.88927 1.21808 1.08042 0.90445 0.97247 1.70486 1.19655 1.17752 1.13700 1.24769 1.05745 0.90798 0.88762 1.45389 1.51988 1.09296 1.07009 1.21798 1.02806 0.97499 0.78277 1.22724 0.97410 1.00129 0.78838 0.90297 1.21361 0.84805 0.88315 1.01028 0.93611 0.95760 0.95630 0.91106 0.89914 0.91657 0.90784 0.90343 0.89442 0.89759 0.88998 0.81442 0.77992 0.88636 0.88925 0.89861 0.95118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.11 10.39 55.49 0.58 -26.53 16 2 C 0.00 -0.07 5.48 -17.43 -0.10 -0.17 16 3 Si 0.91 22.05 29.56 -169.99 -5.02 17.02 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.45 10.23 -15.06 -0.15 -6.61 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.85 3.41 -170.87 -0.58 -15.43 16 10 C 0.14 2.64 6.53 -2.80 -0.02 2.62 16 11 C -0.11 -1.65 4.21 -87.87 -0.37 -2.02 16 12 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 13 C -0.12 -1.38 6.31 -24.60 -0.16 -1.54 16 14 C 0.10 1.26 5.91 -2.56 -0.02 1.24 16 15 N -0.60 -9.54 3.01 -162.26 -0.49 -10.03 16 16 C 0.53 8.81 6.58 -10.98 -0.07 8.74 16 17 O -0.52 -10.86 15.82 5.56 0.09 -10.77 16 18 C -0.11 -1.39 1.86 -91.59 -0.17 -1.56 16 19 H 0.10 1.14 7.08 -51.93 -0.37 0.77 16 20 C -0.11 -1.32 4.68 -26.42 -0.12 -1.44 16 21 C -0.05 -0.47 6.31 -27.62 -0.17 -0.65 16 22 C -0.02 -0.21 6.57 -81.73 -0.54 -0.75 16 23 C -0.03 -0.34 11.84 -17.96 -0.21 -0.55 16 24 N -0.50 -6.51 11.27 -14.87 -0.17 -6.68 16 25 C 0.18 1.94 12.66 -90.71 -1.15 0.79 16 26 N -0.45 -4.90 3.13 -114.10 -0.36 -5.26 16 27 C 0.12 1.18 6.28 -3.93 -0.02 1.16 16 28 C 0.11 2.04 3.69 -66.21 -0.24 1.80 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 C 0.17 4.14 4.92 -3.53 -0.02 4.12 16 31 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.03 0.47 6.83 -51.93 -0.35 0.12 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.81 7.94 -51.93 -0.41 0.40 16 36 H 0.07 0.62 6.86 -51.93 -0.36 0.26 16 37 H 0.07 1.05 7.54 -51.93 -0.39 0.66 16 38 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 39 H 0.09 1.22 8.11 -51.93 -0.42 0.80 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 44 H 0.10 0.75 7.63 -51.93 -0.40 0.35 16 45 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 46 H 0.08 2.36 5.90 -51.93 -0.31 2.06 16 47 H 0.03 0.84 7.90 -51.93 -0.41 0.43 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -34.71 365.07 -11.17 -45.88 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.19 Total: 1.10 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -3.53 Total: 5.19 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -1.02 Total: -63.92 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.71 -11.17 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075966981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.561 kcal (2) G-P(sol) polarization free energy of solvation -34.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds