Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00270 * 2 1 4 4 H 1.48498 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47120 * 299.99984 * 3 2 1 6 6 H 1.48504 * 109.47346 * 59.99820 * 3 2 1 7 7 C 1.38812 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.46388 * 125.49473 * 180.31386 * 9 7 2 11 11 C 1.53750 * 108.45417 * 181.41754 * 10 9 7 12 12 H 1.08993 * 113.83499 * 250.87243 * 11 10 9 13 13 C 1.55170 * 108.31152 * 123.93859 * 11 10 9 14 14 C 1.54867 * 101.73376 * 285.38756 * 13 11 10 15 15 N 1.47406 * 104.81612 * 322.77023 * 14 13 11 16 16 C 1.34782 * 125.58988 * 204.40491 * 15 14 13 17 17 O 1.21284 * 120.00266 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99846 * 0.02562 * 16 15 14 19 19 H 1.09001 * 109.42667 * 60.09807 * 18 16 15 20 20 C 1.53111 * 109.43238 * 180.02562 * 18 16 15 21 21 C 1.53492 * 109.30705 * 189.99028 * 20 18 16 22 22 C 1.50706 * 108.06298 * 311.30768 * 21 20 18 23 23 C 1.33862 * 128.68505 * 195.77982 * 22 21 20 24 24 N 1.34425 * 107.79932 * 179.85443 * 23 22 21 25 25 C 1.30782 * 109.32217 * 359.97438 * 24 23 22 26 26 N 1.34414 * 108.55649 * 0.06103 * 25 24 23 27 27 C 1.46470 * 128.44751 * 179.63586 * 26 25 24 28 28 C 1.46708 * 108.82383 * 24.66384 * 15 14 13 29 29 H 1.09003 * 111.53563 * 235.83571 * 28 15 14 30 30 C 1.46719 * 125.31238 * 359.96782 * 9 7 2 31 31 H 0.96998 * 119.99554 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.92972 * 61.42624 * 10 9 7 33 33 H 1.08994 * 109.21238 * 300.98888 * 10 9 7 34 34 H 1.08998 * 110.97570 * 167.27558 * 13 11 10 35 35 H 1.09000 * 110.97551 * 43.48982 * 13 11 10 36 36 H 1.08997 * 110.36689 * 203.94031 * 14 13 11 37 37 H 1.08997 * 110.37447 * 81.60391 * 14 13 11 38 38 H 1.08999 * 109.49715 * 70.04162 * 20 18 16 39 39 H 1.09000 * 109.52739 * 309.95613 * 20 18 16 40 40 H 1.09005 * 109.74083 * 191.66582 * 21 20 18 41 41 H 1.08998 * 109.78383 * 70.97386 * 21 20 18 42 42 H 1.08003 * 126.09760 * 359.85041 * 23 22 21 43 43 H 1.07996 * 125.72567 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.59569 * 317.08313 * 27 26 25 45 45 H 1.08996 * 109.60045 * 77.56161 * 27 26 25 46 46 H 1.08994 * 109.98179 * 42.73566 * 30 9 7 47 47 H 1.08999 * 110.01710 * 281.44524 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9326 -3.7201 0.0076 11 6 0.8080 -4.7678 -0.0311 12 1 0.6824 -5.3138 0.9037 13 6 1.0455 -5.6930 -1.2540 14 6 0.6203 -4.7777 -2.4287 15 7 -0.5336 -4.0175 -1.9156 16 6 -1.5041 -3.4619 -2.6680 17 8 -2.4104 -2.8552 -2.1374 18 6 -1.4631 -3.5945 -4.1686 19 1 -1.4920 -4.6497 -4.4403 20 6 -2.6720 -2.8781 -4.7765 21 6 -2.7676 -3.2217 -6.2695 22 6 -1.4057 -3.0216 -6.8831 23 6 -1.0777 -2.9206 -8.1770 24 7 0.2532 -2.7461 -8.2510 25 6 0.7561 -2.7358 -7.0438 26 7 -0.2442 -2.9056 -6.1622 27 6 -0.1692 -2.9697 -4.7008 28 6 -0.4494 -3.9594 -0.4521 29 1 -1.3523 -4.3509 0.0165 30 6 -0.1354 -2.5239 0.0007 31 1 -0.4849 0.8401 0.0004 32 1 2.5281 -3.8522 0.9110 33 1 2.5681 -3.8293 -0.8712 34 1 0.4133 -6.5793 -1.2013 35 1 2.0967 -5.9695 -1.3357 36 1 0.3267 -5.3777 -3.2900 37 1 1.4320 -4.1010 -2.6956 38 1 -2.5542 -1.8010 -4.6579 39 1 -3.5807 -3.2028 -4.2696 40 1 -3.4897 -2.5638 -6.7532 41 1 -3.0769 -4.2598 -6.3901 42 1 -1.7604 -2.9704 -9.0123 43 1 1.8001 -2.6123 -6.7967 44 1 0.6816 -3.5835 -4.4051 45 1 -0.0559 -1.9640 -4.2961 46 1 -0.5760 -1.8092 -0.6944 47 1 -0.5256 -2.3561 1.0045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075966982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = 64.881756 kcal Electronic energy + Delta-G solvation = -29977.102923 eV Core-core repulsion = 26161.637387 eV Total energy + Delta-G solvation = -3815.465536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.36598 -40.41270 -38.33708 -36.08009 -34.88607 -33.10157 -32.32037 -30.94528 -30.74915 -28.90791 -27.78481 -26.50637 -24.90046 -24.72826 -23.19774 -22.12729 -21.42925 -20.72945 -19.72902 -19.23129 -18.48716 -17.28085 -17.12151 -16.70854 -16.10690 -15.55975 -15.11293 -14.75504 -14.55694 -14.18583 -13.99203 -13.91254 -13.87308 -13.65781 -13.27310 -13.20780 -13.05692 -12.54919 -12.27063 -12.13795 -11.87876 -11.68905 -11.62411 -11.27493 -11.21034 -11.08286 -10.99735 -10.80972 -10.61903 -10.37810 -10.18756 -9.98256 -9.88476 -9.76130 -9.51964 -9.44775 -8.67940 -8.34774 -8.24945 -6.87370 -5.70626 -3.11923 2.05356 2.60161 2.95624 3.15204 3.21859 3.35438 3.40862 3.43934 4.28424 4.34966 4.43470 4.48209 4.63633 4.66210 4.76712 4.79827 4.97770 5.08284 5.10978 5.14041 5.26182 5.35789 5.41396 5.41892 5.47543 5.53354 5.63089 5.64612 5.67905 5.72975 5.78090 5.93088 5.96151 6.09872 6.13206 6.24154 6.36496 6.41076 6.47800 6.57252 6.72223 6.76585 7.18459 7.39936 7.59883 7.82651 7.88903 8.06002 8.32035 8.45409 9.17226 9.78713 10.40981 11.34064 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.004535 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.723726 B = 6172.426919 C = 7163.054595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.599 5.599 10 C 0.143 3.857 11 C -0.110 4.110 12 H 0.097 0.903 13 C -0.123 4.123 14 C 0.097 3.903 15 N -0.597 5.597 16 C 0.535 3.465 17 O -0.520 6.520 18 C -0.111 4.111 19 H 0.100 0.900 20 C -0.106 4.106 21 C -0.045 4.045 22 C -0.025 4.025 23 C -0.029 4.029 24 N -0.500 5.500 25 C 0.185 3.815 26 N -0.450 5.450 27 C 0.108 3.892 28 C 0.114 3.886 29 H 0.079 0.921 30 C 0.155 3.845 31 H 0.253 0.747 32 H 0.021 0.979 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.167 0.833 43 H 0.204 0.796 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.106 0.894 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 -13.028 -9.376 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.016 3.984 11 C -0.129 4.129 12 H 0.115 0.885 13 C -0.162 4.162 14 C -0.026 4.026 15 N -0.331 5.331 16 C 0.321 3.679 17 O -0.395 6.395 18 C -0.133 4.133 19 H 0.118 0.882 20 C -0.144 4.144 21 C -0.083 4.083 22 C -0.139 4.139 23 C -0.176 4.176 24 N -0.218 5.218 25 C -0.097 4.097 26 N -0.133 5.133 27 C -0.014 4.014 28 C 0.010 3.990 29 H 0.097 0.903 30 C 0.030 3.970 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.184 0.816 43 H 0.221 0.779 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -2.194 -12.331 -9.701 15.843 hybrid contribution 0.295 0.780 0.917 1.240 sum -1.900 -11.551 -8.784 14.635 Atomic orbital electron populations 1.69915 1.04746 1.24881 1.56531 1.24816 0.95672 0.97687 1.02080 0.86083 0.78675 0.83875 0.77346 1.20502 1.21774 1.21651 1.19031 0.90386 0.82256 1.44225 0.90455 1.44145 1.01561 0.99798 1.87033 1.21116 0.93413 0.85778 0.98054 1.23070 0.95995 0.96039 0.97816 0.88482 1.22796 1.01819 0.97230 0.94310 1.22415 0.89229 0.93947 0.96982 1.48298 1.23719 1.53471 1.07602 1.19611 0.81651 0.78998 0.87593 1.90754 1.34842 1.40361 1.73541 1.21522 0.96160 1.02250 0.93392 0.88157 1.21504 0.97413 1.01559 0.93912 1.20254 0.90848 1.02544 0.94660 1.21224 0.89202 1.11090 0.92431 1.21786 0.92554 1.08629 0.94631 1.70489 1.08977 1.20352 1.21984 1.24809 0.95432 1.05539 0.83897 1.45437 1.07529 1.52999 1.07384 1.22079 0.98743 1.04134 0.76479 1.22697 0.96968 1.00102 0.79229 0.90325 1.21686 0.84743 0.90557 1.00061 0.93661 0.96160 0.95874 0.91012 0.89896 0.91415 0.90829 0.90483 0.89334 0.89147 0.90047 0.81571 0.77912 0.88114 0.88441 0.87619 0.96073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.80 10.17 55.49 0.56 -26.24 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.21 10.25 -15.06 -0.15 -6.37 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.51 3.37 -172.22 -0.58 -15.09 16 10 C 0.14 2.68 6.39 -3.71 -0.02 2.65 16 11 C -0.11 -1.65 4.27 -87.87 -0.38 -2.02 16 12 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.12 -1.38 6.31 -24.60 -0.16 -1.54 16 14 C 0.10 1.20 4.66 -2.56 -0.01 1.18 16 15 N -0.60 -9.58 3.00 -162.25 -0.49 -10.07 16 16 C 0.54 9.00 6.82 -10.98 -0.07 8.92 16 17 O -0.52 -10.93 15.54 5.55 0.09 -10.84 16 18 C -0.11 -1.41 1.86 -91.60 -0.17 -1.58 16 19 H 0.10 1.07 7.81 -51.93 -0.41 0.67 16 20 C -0.11 -1.30 4.69 -26.42 -0.12 -1.42 16 21 C -0.04 -0.45 6.31 -27.63 -0.17 -0.62 16 22 C -0.02 -0.31 6.57 -81.73 -0.54 -0.84 16 23 C -0.03 -0.37 11.84 -17.95 -0.21 -0.58 16 24 N -0.50 -7.29 11.27 -14.87 -0.17 -7.46 16 25 C 0.19 2.39 12.66 -90.71 -1.15 1.24 16 26 N -0.45 -5.73 3.13 -114.12 -0.36 -6.09 16 27 C 0.11 1.37 5.93 -3.94 -0.02 1.34 16 28 C 0.11 2.06 3.65 -66.20 -0.24 1.82 16 29 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 30 C 0.16 3.72 5.17 -3.52 -0.02 3.70 16 31 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.02 0.42 6.78 -51.93 -0.35 0.07 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.80 7.96 -51.93 -0.41 0.39 16 36 H 0.07 0.65 7.22 -51.93 -0.37 0.27 16 37 H 0.07 0.98 6.64 -51.93 -0.34 0.63 16 38 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.09 1.09 7.77 -51.93 -0.40 0.68 16 40 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.17 1.73 8.06 -52.48 -0.42 1.30 16 43 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 44 H 0.10 1.12 5.34 -51.93 -0.28 0.84 16 45 H 0.10 1.49 8.12 -51.93 -0.42 1.06 16 46 H 0.11 2.95 5.31 -51.93 -0.28 2.67 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -33.95 360.56 -11.12 -45.06 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.04 Total: 2.79 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -3.54 Total: 5.62 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -1.03 Total: -64.95 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.95 -11.12 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075966982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.945 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds