Wall clock time and date at job start Tue Mar 31 2020 06:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00270 * 2 1 4 4 H 1.48498 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47120 * 299.99984 * 3 2 1 6 6 H 1.48504 * 109.47346 * 59.99820 * 3 2 1 7 7 C 1.38812 * 119.99605 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99967 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.46388 * 125.49473 * 180.31386 * 9 7 2 11 11 C 1.53750 * 108.45417 * 181.41754 * 10 9 7 12 12 H 1.08993 * 113.83499 * 250.87243 * 11 10 9 13 13 C 1.55170 * 108.31152 * 123.93859 * 11 10 9 14 14 C 1.54867 * 101.73376 * 285.38756 * 13 11 10 15 15 N 1.47406 * 104.81612 * 322.77023 * 14 13 11 16 16 C 1.34782 * 125.58988 * 204.40491 * 15 14 13 17 17 O 1.21284 * 120.00266 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99846 * 0.02562 * 16 15 14 19 19 H 1.09001 * 109.42667 * 60.09807 * 18 16 15 20 20 C 1.53111 * 109.43238 * 180.02562 * 18 16 15 21 21 C 1.53492 * 109.30705 * 189.99028 * 20 18 16 22 22 C 1.50706 * 108.06298 * 311.30768 * 21 20 18 23 23 C 1.33862 * 128.68505 * 195.77982 * 22 21 20 24 24 N 1.34425 * 107.79932 * 179.85443 * 23 22 21 25 25 C 1.30782 * 109.32217 * 359.97438 * 24 23 22 26 26 N 1.34414 * 108.55649 * 0.06103 * 25 24 23 27 27 C 1.46470 * 128.44751 * 179.63586 * 26 25 24 28 28 C 1.46708 * 108.82383 * 24.66384 * 15 14 13 29 29 H 1.09003 * 111.53563 * 235.83571 * 28 15 14 30 30 C 1.46719 * 125.31238 * 359.96782 * 9 7 2 31 31 H 0.96998 * 119.99554 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.92972 * 61.42624 * 10 9 7 33 33 H 1.08994 * 109.21238 * 300.98888 * 10 9 7 34 34 H 1.08998 * 110.97570 * 167.27558 * 13 11 10 35 35 H 1.09000 * 110.97551 * 43.48982 * 13 11 10 36 36 H 1.08997 * 110.36689 * 203.94031 * 14 13 11 37 37 H 1.08997 * 110.37447 * 81.60391 * 14 13 11 38 38 H 1.08999 * 109.49715 * 70.04162 * 20 18 16 39 39 H 1.09000 * 109.52739 * 309.95613 * 20 18 16 40 40 H 1.09005 * 109.74083 * 191.66582 * 21 20 18 41 41 H 1.08998 * 109.78383 * 70.97386 * 21 20 18 42 42 H 1.08003 * 126.09760 * 359.85041 * 23 22 21 43 43 H 1.07996 * 125.72567 * 180.02562 * 25 24 23 44 44 H 1.09000 * 109.59569 * 317.08313 * 27 26 25 45 45 H 1.08996 * 109.60045 * 77.56161 * 27 26 25 46 46 H 1.08994 * 109.98179 * 42.73566 * 30 9 7 47 47 H 1.08999 * 110.01710 * 281.44524 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 1.9326 -3.7201 0.0076 11 6 0.8080 -4.7678 -0.0311 12 1 0.6824 -5.3138 0.9037 13 6 1.0455 -5.6930 -1.2540 14 6 0.6203 -4.7777 -2.4287 15 7 -0.5336 -4.0175 -1.9156 16 6 -1.5041 -3.4619 -2.6680 17 8 -2.4104 -2.8552 -2.1374 18 6 -1.4631 -3.5945 -4.1686 19 1 -1.4920 -4.6497 -4.4403 20 6 -2.6720 -2.8781 -4.7765 21 6 -2.7676 -3.2217 -6.2695 22 6 -1.4057 -3.0216 -6.8831 23 6 -1.0777 -2.9206 -8.1770 24 7 0.2532 -2.7461 -8.2510 25 6 0.7561 -2.7358 -7.0438 26 7 -0.2442 -2.9056 -6.1622 27 6 -0.1692 -2.9697 -4.7008 28 6 -0.4494 -3.9594 -0.4521 29 1 -1.3523 -4.3509 0.0165 30 6 -0.1354 -2.5239 0.0007 31 1 -0.4849 0.8401 0.0004 32 1 2.5281 -3.8522 0.9110 33 1 2.5681 -3.8293 -0.8712 34 1 0.4133 -6.5793 -1.2013 35 1 2.0967 -5.9695 -1.3357 36 1 0.3267 -5.3777 -3.2900 37 1 1.4320 -4.1010 -2.6956 38 1 -2.5542 -1.8010 -4.6579 39 1 -3.5807 -3.2028 -4.2696 40 1 -3.4897 -2.5638 -6.7532 41 1 -3.0769 -4.2598 -6.3901 42 1 -1.7604 -2.9704 -9.0123 43 1 1.8001 -2.6123 -6.7967 44 1 0.6816 -3.5835 -4.4051 45 1 -0.0559 -1.9640 -4.2961 46 1 -0.5760 -1.8092 -0.6944 47 1 -0.5256 -2.3561 1.0045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075966982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:00 Heat of formation + Delta-G solvation = 44.077893 kcal Electronic energy + Delta-G solvation = -29978.005046 eV Core-core repulsion = 26161.637387 eV Total energy + Delta-G solvation = -3816.367660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.34122 -41.71500 -39.68694 -37.21714 -36.53587 -34.20396 -33.83139 -32.46378 -31.86351 -30.44209 -28.82742 -27.95517 -26.61438 -25.89025 -24.28978 -23.29831 -22.45876 -22.29696 -20.98194 -20.32770 -19.75275 -18.94621 -18.23641 -18.07368 -17.32197 -16.88360 -16.63456 -16.06747 -15.89174 -15.61741 -15.20607 -14.97882 -14.91000 -14.76162 -14.61642 -14.50246 -14.14533 -13.87506 -13.77732 -13.49963 -13.10101 -13.04039 -12.90557 -12.88756 -12.71934 -12.45339 -12.20265 -12.07129 -12.03647 -11.86478 -11.83933 -11.57775 -11.40648 -11.02623 -10.84424 -10.71327 -10.53848 -9.61775 -9.28185 -8.87801 -7.81647 -5.24116 1.10147 1.40385 1.40941 1.42976 1.51350 1.83179 2.01443 2.18559 2.44679 3.24797 3.28475 3.30465 3.46520 3.57930 3.63612 3.73629 3.77384 3.90394 4.00755 4.04038 4.10179 4.13201 4.23888 4.33420 4.42547 4.47807 4.52019 4.57042 4.61290 4.75062 4.78377 4.85455 4.92213 4.95257 5.02047 5.10320 5.15392 5.16922 5.28869 5.37055 5.42389 5.46294 5.58025 5.80376 5.86397 6.22560 6.27785 6.58243 7.07194 7.09469 7.15514 7.78970 8.39631 9.20997 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.004535 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.723726 B = 6172.426919 C = 7163.054595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.259 1.259 5 H -0.298 1.298 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.087 0.913 9 N -0.618 5.618 10 C 0.135 3.865 11 C -0.098 4.098 12 H 0.119 0.881 13 C -0.106 4.106 14 C 0.088 3.912 15 N -0.597 5.597 16 C 0.527 3.473 17 O -0.575 6.575 18 C -0.098 4.098 19 H 0.136 0.864 20 C -0.104 4.104 21 C -0.034 4.034 22 C -0.030 4.030 23 C -0.042 4.042 24 N -0.530 5.530 25 C 0.179 3.821 26 N -0.454 5.454 27 C 0.118 3.882 28 C 0.117 3.883 29 H 0.078 0.922 30 C 0.165 3.835 31 H 0.241 0.759 32 H 0.023 0.977 33 H 0.041 0.959 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.187 0.813 43 H 0.227 0.773 44 H 0.122 0.878 45 H 0.060 0.940 46 H 0.060 0.940 47 H -0.026 1.026 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -16.353 -10.955 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.260 4.260 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.225 1.225 6 H -0.223 1.223 7 C -0.361 4.361 8 H 0.104 0.896 9 N -0.343 5.343 10 C 0.010 3.990 11 C -0.117 4.117 12 H 0.137 0.863 13 C -0.144 4.144 14 C -0.033 4.033 15 N -0.330 5.330 16 C 0.315 3.685 17 O -0.454 6.454 18 C -0.119 4.119 19 H 0.154 0.846 20 C -0.142 4.142 21 C -0.072 4.072 22 C -0.145 4.145 23 C -0.188 4.188 24 N -0.249 5.249 25 C -0.102 4.102 26 N -0.137 5.137 27 C -0.004 4.004 28 C 0.013 3.987 29 H 0.096 0.904 30 C 0.038 3.962 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.204 0.796 43 H 0.244 0.756 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.079 0.921 47 H -0.008 1.008 Dipole moment (debyes) X Y Z Total from point charges -0.557 -15.717 -11.301 19.366 hybrid contribution -0.165 1.842 1.453 2.352 sum -0.722 -13.875 -9.847 17.029 Atomic orbital electron populations 1.70226 1.06366 1.24544 1.58596 1.25620 0.96339 1.01010 1.03023 0.85102 0.78563 0.79877 0.76410 1.18305 1.22519 1.22332 1.19450 0.91003 0.83523 1.42146 0.89559 1.44405 1.01885 1.01375 1.86681 1.21407 0.94854 0.84075 0.98623 1.23081 0.92093 0.95603 1.00915 0.86284 1.22841 1.04209 0.96723 0.90601 1.22746 0.87472 0.94027 0.99061 1.48393 1.24542 1.53368 1.06663 1.20399 0.80955 0.77819 0.89327 1.90728 1.37186 1.42588 1.74904 1.21465 0.96218 1.04252 0.89976 0.84599 1.21461 0.97343 0.99501 0.95921 1.20307 0.90042 1.04589 0.92229 1.21609 0.89854 1.10561 0.92448 1.22190 0.92417 1.08610 0.95593 1.70488 1.10026 1.21448 1.22909 1.25331 0.96477 1.04868 0.83572 1.45468 1.07883 1.53247 1.07129 1.21906 0.99494 1.02451 0.76582 1.22406 0.98676 0.96614 0.81045 0.90394 1.21306 0.84666 0.93725 0.96463 0.94971 0.95939 0.94114 0.88106 0.87130 0.87363 0.91784 0.93798 0.89460 0.87673 0.87202 0.79621 0.75629 0.85969 0.92143 0.92148 1.00849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.26 10.17 21.65 0.22 -59.04 16 2 C -0.07 -3.86 5.48 84.86 0.47 -3.40 16 3 Si 0.97 46.46 29.55 68.60 2.03 48.48 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 7 C -0.23 -12.71 10.25 84.03 0.86 -11.85 16 8 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -30.46 3.37 -698.79 -2.36 -32.81 16 10 C 0.14 4.82 6.39 86.65 0.55 5.37 16 11 C -0.10 -2.65 4.27 -9.01 -0.04 -2.69 16 12 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 13 C -0.11 -1.80 6.31 31.98 0.20 -1.60 16 14 C 0.09 1.82 4.66 86.84 0.40 2.22 16 15 N -0.60 -18.50 3.00 -785.63 -2.36 -20.86 16 16 C 0.53 17.83 6.82 87.66 0.60 18.42 16 17 O -0.58 -25.60 15.54 -3.04 -0.05 -25.64 16 18 C -0.10 -2.34 1.86 -11.43 -0.02 -2.36 16 19 H 0.14 2.33 7.81 -2.39 -0.02 2.32 16 20 C -0.10 -2.52 4.69 30.80 0.14 -2.37 16 21 C -0.03 -0.59 6.31 30.02 0.19 -0.40 16 22 C -0.03 -0.69 6.57 40.73 0.27 -0.42 16 23 C -0.04 -1.00 11.84 83.30 0.99 -0.01 16 24 N -0.53 -14.66 11.27 -200.96 -2.26 -16.93 16 25 C 0.18 4.32 12.66 180.38 2.28 6.61 16 26 N -0.45 -10.81 3.13 -514.97 -1.61 -12.43 16 27 C 0.12 2.86 5.93 86.46 0.51 3.38 16 28 C 0.12 4.25 3.65 46.00 0.17 4.42 16 29 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 30 C 0.16 8.33 5.17 86.60 0.45 8.78 16 31 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 1.34 6.78 -2.39 -0.02 1.32 16 34 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.40 7.96 -2.39 -0.02 1.38 16 36 H 0.11 1.43 7.22 -2.39 -0.02 1.41 16 37 H 0.06 1.48 6.64 -2.39 -0.02 1.46 16 38 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 39 H 0.09 2.14 7.77 -2.39 -0.02 2.12 16 40 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 43 H 0.23 3.98 8.06 -2.91 -0.02 3.95 16 44 H 0.12 2.39 5.34 -2.39 -0.01 2.37 16 45 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 46 H 0.06 3.63 5.31 -2.39 -0.01 3.61 16 47 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 Total: -1.00 -81.64 360.56 2.61 -79.04 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.97 Total: 16.10 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 8.03 Total: 24.09 kcal Atomic # 7 Polarization: -133.69 SS G_CDS: -8.37 Total: -142.06 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.64 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -81.64 2.61 -79.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075966982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.116 kcal (2) G-P(sol) polarization free energy of solvation -81.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds