Wall clock time and date at job start Tue Mar 31 2020 06:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99596 * 2 1 4 4 H 1.48504 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47283 * 299.99687 * 3 2 1 6 6 H 1.48497 * 109.47565 * 59.99987 * 3 2 1 7 7 C 1.38811 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00361 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.46383 * 125.49492 * 180.31489 * 9 7 2 11 11 C 1.53752 * 108.45430 * 181.42819 * 10 9 7 12 12 H 1.08994 * 113.83540 * 250.87905 * 11 10 9 13 13 C 1.55164 * 108.31214 * 123.94114 * 11 10 9 14 14 C 1.54869 * 101.73482 * 285.38574 * 13 11 10 15 15 N 1.47405 * 104.81613 * 322.77122 * 14 13 11 16 16 C 1.34777 * 125.58963 * 204.40279 * 15 14 13 17 17 O 1.21279 * 120.00051 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99649 * 0.02562 * 16 15 14 19 19 H 1.08998 * 109.43101 * 59.90598 * 18 16 15 20 20 C 1.53032 * 109.42902 * 179.75309 * 18 16 15 21 21 C 1.53325 * 109.79522 * 191.76928 * 20 18 16 22 22 C 1.50942 * 108.23277 * 309.48675 * 21 20 18 23 23 N 1.30128 * 128.28363 * 196.69474 * 22 21 20 24 24 N 1.40316 * 108.12243 * 179.62462 * 23 22 21 25 25 H 0.97002 * 126.00082 * 180.02562 * 24 23 22 26 26 C 1.35190 * 107.99644 * 0.03660 * 24 23 22 27 27 C 1.34573 * 107.61830 * 0.04016 * 26 24 23 28 28 C 1.50877 * 128.32831 * 179.73031 * 27 26 24 29 29 C 1.46711 * 108.82527 * 24.66375 * 15 14 13 30 30 H 1.08997 * 111.53079 * 235.84023 * 29 15 14 31 31 C 1.46719 * 125.30993 * 359.97438 * 9 7 2 32 32 H 0.96993 * 120.00056 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.92799 * 61.43961 * 10 9 7 34 34 H 1.08993 * 109.21327 * 300.99770 * 10 9 7 35 35 H 1.09000 * 110.97414 * 167.27178 * 13 11 10 36 36 H 1.09002 * 110.97549 * 43.49313 * 13 11 10 37 37 H 1.08997 * 110.36813 * 203.93886 * 14 13 11 38 38 H 1.09000 * 110.36762 * 81.60805 * 14 13 11 39 39 H 1.09001 * 109.42493 * 311.90756 * 20 18 16 40 40 H 1.08999 * 109.42395 * 71.79646 * 20 18 16 41 41 H 1.08999 * 109.81873 * 189.72599 * 21 20 18 42 42 H 1.08999 * 109.57746 * 69.09988 * 21 20 18 43 43 H 1.08001 * 126.19688 * 180.02562 * 26 24 23 44 44 H 1.09009 * 109.72076 * 316.32587 * 28 27 26 45 45 H 1.08998 * 109.72649 * 76.97769 * 28 27 26 46 46 H 1.08999 * 109.98707 * 42.72792 * 31 9 7 47 47 H 1.08999 * 110.01582 * 281.43455 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.9330 -3.7199 0.0055 11 6 0.8084 -4.7677 -0.0331 12 1 0.6833 -5.3142 0.9015 13 6 1.0453 -5.6923 -1.2565 14 6 0.6193 -4.7765 -2.4306 15 7 -0.5344 -4.0166 -1.9165 16 6 -1.5053 -3.4608 -2.6680 17 8 -2.4113 -2.8545 -2.1366 18 6 -1.4651 -3.5927 -4.1687 19 1 -1.4906 -4.6478 -4.4408 20 6 -2.6775 -2.8823 -4.7748 21 6 -2.8092 -3.2531 -6.2567 22 6 -1.4702 -3.0360 -6.9187 23 7 -1.2051 -2.9389 -8.1890 24 7 0.1753 -2.7319 -8.3323 25 1 0.6516 -2.6237 -9.1703 26 6 0.7247 -2.7099 -7.0973 27 6 -0.2670 -2.8963 -6.2069 28 6 -0.1740 -2.9592 -4.7023 29 6 -0.4493 -3.9592 -0.4530 30 1 -1.3519 -4.3511 0.0159 31 6 -0.1351 -2.5239 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 2.5289 -3.8525 0.9085 34 1 2.5679 -3.8286 -0.8737 35 1 0.4132 -6.5787 -1.2038 36 1 2.0965 -5.9687 -1.3389 37 1 0.3252 -5.3762 -3.2920 38 1 1.4309 -4.0997 -2.6976 39 1 -3.5791 -3.1865 -4.2431 40 1 -2.5489 -1.8038 -4.6832 41 1 -3.5605 -2.6211 -6.7304 42 1 -3.0986 -4.3001 -6.3470 43 1 1.7703 -2.5685 -6.8668 44 1 0.6819 -3.5685 -4.4118 45 1 -0.0639 -1.9529 -4.2982 46 1 -0.5763 -1.8088 -0.6938 47 1 -0.5246 -2.3567 1.0047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076456752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:54 Heat of formation + Delta-G solvation = 70.321514 kcal Electronic energy + Delta-G solvation = -29830.878813 eV Core-core repulsion = 26015.649162 eV Total energy + Delta-G solvation = -3815.229651 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51280 -40.15356 -38.10739 -35.83422 -34.71079 -32.52921 -31.84299 -30.77357 -30.46312 -29.26901 -28.21243 -26.30542 -24.72904 -24.54087 -23.06516 -21.79251 -21.07761 -20.48509 -19.51359 -18.88266 -18.20036 -17.65669 -17.01394 -16.53207 -15.74780 -15.30857 -14.95828 -14.74567 -14.47872 -13.91667 -13.74332 -13.66864 -13.37985 -13.20623 -12.98757 -12.84278 -12.63180 -12.28371 -12.06411 -11.96877 -11.70482 -11.55339 -11.47396 -11.05275 -11.00643 -10.91372 -10.76478 -10.72369 -10.46290 -10.27327 -10.20998 -10.07739 -9.74932 -9.64265 -9.41554 -9.12549 -8.56815 -8.42105 -7.99526 -6.75487 -5.59688 -3.00735 1.85673 2.71687 2.79781 3.18610 3.41738 3.46475 3.49948 3.52372 4.41882 4.51479 4.67052 4.77706 4.85006 4.94692 5.04878 5.16354 5.20358 5.30001 5.44434 5.49360 5.52289 5.56337 5.57772 5.65137 5.73682 5.76227 5.83710 5.84714 5.92625 5.96181 6.07118 6.08908 6.24808 6.26614 6.30605 6.39699 6.47334 6.58823 6.64630 6.66043 6.71887 6.92883 7.22878 7.54618 7.63392 7.70506 8.00228 8.13798 8.45189 8.77636 9.28034 9.89768 10.52770 11.44816 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.004457 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.898794 B = 6280.887529 C = 7281.204681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.144 3.856 11 C -0.111 4.111 12 H 0.094 0.906 13 C -0.125 4.125 14 C 0.103 3.897 15 N -0.598 5.598 16 C 0.533 3.467 17 O -0.531 6.531 18 C -0.095 4.095 19 H 0.091 0.909 20 C -0.097 4.097 21 C -0.038 4.038 22 C 0.084 3.916 23 N -0.294 5.294 24 N -0.488 5.488 25 H 0.437 0.563 26 C 0.060 3.940 27 C -0.226 4.226 28 C -0.037 4.037 29 C 0.114 3.886 30 H 0.076 0.924 31 C 0.155 3.845 32 H 0.252 0.748 33 H 0.018 0.982 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.177 0.823 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.107 0.893 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.673 -12.467 -12.549 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.358 4.358 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.017 3.983 11 C -0.130 4.130 12 H 0.113 0.887 13 C -0.163 4.163 14 C -0.020 4.020 15 N -0.331 5.331 16 C 0.320 3.680 17 O -0.407 6.407 18 C -0.117 4.117 19 H 0.109 0.891 20 C -0.136 4.136 21 C -0.077 4.077 22 C -0.085 4.085 23 N -0.117 5.117 24 N -0.197 5.197 25 H 0.281 0.719 26 C -0.085 4.085 27 C -0.237 4.237 28 C -0.075 4.075 29 C 0.010 3.990 30 H 0.094 0.906 31 C 0.030 3.970 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.194 0.806 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.125 0.875 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.390 -11.880 -13.475 17.968 hybrid contribution 1.410 0.974 0.401 1.760 sum 1.020 -10.906 -13.074 17.056 Atomic orbital electron populations 1.69920 1.04696 1.24753 1.56546 1.24804 0.95638 0.97582 1.02230 0.86099 0.78612 0.84090 0.77268 1.20601 1.21825 1.21765 1.19013 0.90323 0.82328 1.44087 0.90563 1.44133 1.01645 0.99751 1.86945 1.21101 0.93434 0.85843 0.97883 1.23056 0.96145 0.96067 0.97726 0.88739 1.22812 1.01563 0.97297 0.94665 1.22352 0.89357 0.93767 0.96560 1.48252 1.23954 1.53772 1.07168 1.20036 0.81097 0.78405 0.88417 1.90715 1.35165 1.40820 1.74010 1.21244 0.97120 1.01531 0.91795 0.89092 1.21385 0.97690 1.01648 0.92846 1.20166 0.90610 1.02415 0.94482 1.22428 0.96931 0.98737 0.90359 1.76965 0.91812 1.24280 1.18607 1.46283 1.05936 1.59922 1.07550 0.71949 1.22066 0.99643 1.01826 0.84974 1.20089 0.92193 1.14736 0.96712 1.20066 0.96407 1.02212 0.88817 1.22640 0.96671 0.99833 0.79854 0.90598 1.21684 0.84610 0.90840 0.99889 0.93717 0.96377 0.95895 0.91210 0.90162 0.91353 0.90906 0.89812 0.90681 0.89705 0.89886 0.80627 0.90240 0.90039 0.87518 0.96327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.46 10.17 55.49 0.56 -26.89 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.23 -6.34 10.25 -15.06 -0.15 -6.50 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.07 3.37 -172.22 -0.58 -15.65 16 10 C 0.14 2.83 6.39 -3.71 -0.02 2.81 16 11 C -0.11 -1.77 4.27 -87.87 -0.38 -2.15 16 12 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 13 C -0.13 -1.53 6.31 -24.60 -0.16 -1.69 16 14 C 0.10 1.40 4.67 -2.56 -0.01 1.39 16 15 N -0.60 -10.43 3.00 -162.25 -0.49 -10.92 16 16 C 0.53 9.76 6.82 -10.99 -0.07 9.68 16 17 O -0.53 -11.93 15.50 5.56 0.09 -11.84 16 18 C -0.10 -1.34 1.82 -91.55 -0.17 -1.51 16 19 H 0.09 1.09 7.79 -51.93 -0.40 0.68 16 20 C -0.10 -1.32 4.64 -26.55 -0.12 -1.44 16 21 C -0.04 -0.43 6.31 -27.60 -0.17 -0.60 16 22 C 0.08 1.11 7.10 -82.35 -0.58 0.53 16 23 N -0.29 -3.93 12.68 33.75 0.43 -3.50 16 24 N -0.49 -5.09 7.37 30.35 0.22 -4.87 16 25 H 0.44 3.00 8.96 -182.43 -1.64 1.36 16 26 C 0.06 0.64 11.95 -17.37 -0.21 0.44 16 27 C -0.23 -2.91 5.89 -104.98 -0.62 -3.53 16 28 C -0.04 -0.51 5.20 -27.60 -0.14 -0.65 16 29 C 0.11 2.21 3.65 -66.20 -0.24 1.96 16 30 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 31 C 0.16 3.89 5.17 -3.52 -0.02 3.87 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.02 0.44 6.78 -51.93 -0.35 0.09 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 37 H 0.07 0.74 7.23 -51.93 -0.38 0.37 16 38 H 0.07 1.08 6.64 -51.93 -0.34 0.73 16 39 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 40 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 44 H 0.08 1.00 5.40 -51.92 -0.28 0.72 16 45 H 0.08 1.38 8.12 -51.93 -0.42 0.95 16 46 H 0.11 3.10 5.31 -51.93 -0.28 2.83 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -35.23 360.07 -10.78 -46.01 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.25 Total: 2.62 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.17 Total: 2.33 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.15 Total: -61.83 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.23 -10.78 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076456752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.335 kcal (2) G-P(sol) polarization free energy of solvation -35.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds