Wall clock time and date at job start Tue Mar 31 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99596 * 2 1 4 4 H 1.48504 * 109.47333 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47283 * 299.99687 * 3 2 1 6 6 H 1.48497 * 109.47565 * 59.99987 * 3 2 1 7 7 C 1.38811 * 120.00611 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00361 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.46383 * 125.49492 * 180.31489 * 9 7 2 11 11 C 1.53752 * 108.45430 * 181.42819 * 10 9 7 12 12 H 1.08994 * 113.83540 * 250.87905 * 11 10 9 13 13 C 1.55164 * 108.31214 * 123.94114 * 11 10 9 14 14 C 1.54869 * 101.73482 * 285.38574 * 13 11 10 15 15 N 1.47405 * 104.81613 * 322.77122 * 14 13 11 16 16 C 1.34777 * 125.58963 * 204.40279 * 15 14 13 17 17 O 1.21279 * 120.00051 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99649 * 0.02562 * 16 15 14 19 19 H 1.08998 * 109.43101 * 59.90598 * 18 16 15 20 20 C 1.53032 * 109.42902 * 179.75309 * 18 16 15 21 21 C 1.53325 * 109.79522 * 191.76928 * 20 18 16 22 22 C 1.50942 * 108.23277 * 309.48675 * 21 20 18 23 23 N 1.30128 * 128.28363 * 196.69474 * 22 21 20 24 24 N 1.40316 * 108.12243 * 179.62462 * 23 22 21 25 25 H 0.97002 * 126.00082 * 180.02562 * 24 23 22 26 26 C 1.35190 * 107.99644 * 0.03660 * 24 23 22 27 27 C 1.34573 * 107.61830 * 0.04016 * 26 24 23 28 28 C 1.50877 * 128.32831 * 179.73031 * 27 26 24 29 29 C 1.46711 * 108.82527 * 24.66375 * 15 14 13 30 30 H 1.08997 * 111.53079 * 235.84023 * 29 15 14 31 31 C 1.46719 * 125.30993 * 359.97438 * 9 7 2 32 32 H 0.96993 * 120.00056 * 0.02562 * 1 2 3 33 33 H 1.09005 * 109.92799 * 61.43961 * 10 9 7 34 34 H 1.08993 * 109.21327 * 300.99770 * 10 9 7 35 35 H 1.09000 * 110.97414 * 167.27178 * 13 11 10 36 36 H 1.09002 * 110.97549 * 43.49313 * 13 11 10 37 37 H 1.08997 * 110.36813 * 203.93886 * 14 13 11 38 38 H 1.09000 * 110.36762 * 81.60805 * 14 13 11 39 39 H 1.09001 * 109.42493 * 311.90756 * 20 18 16 40 40 H 1.08999 * 109.42395 * 71.79646 * 20 18 16 41 41 H 1.08999 * 109.81873 * 189.72599 * 21 20 18 42 42 H 1.08999 * 109.57746 * 69.09988 * 21 20 18 43 43 H 1.08001 * 126.19688 * 180.02562 * 26 24 23 44 44 H 1.09009 * 109.72076 * 316.32587 * 28 27 26 45 45 H 1.08998 * 109.72649 * 76.97769 * 28 27 26 46 46 H 1.08999 * 109.98707 * 42.72792 * 31 9 7 47 47 H 1.08999 * 110.01582 * 281.43455 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3966 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.9330 -3.7199 0.0055 11 6 0.8084 -4.7677 -0.0331 12 1 0.6833 -5.3142 0.9015 13 6 1.0453 -5.6923 -1.2565 14 6 0.6193 -4.7765 -2.4306 15 7 -0.5344 -4.0166 -1.9165 16 6 -1.5053 -3.4608 -2.6680 17 8 -2.4113 -2.8545 -2.1366 18 6 -1.4651 -3.5927 -4.1687 19 1 -1.4906 -4.6478 -4.4408 20 6 -2.6775 -2.8823 -4.7748 21 6 -2.8092 -3.2531 -6.2567 22 6 -1.4702 -3.0360 -6.9187 23 7 -1.2051 -2.9389 -8.1890 24 7 0.1753 -2.7319 -8.3323 25 1 0.6516 -2.6237 -9.1703 26 6 0.7247 -2.7099 -7.0973 27 6 -0.2670 -2.8963 -6.2069 28 6 -0.1740 -2.9592 -4.7023 29 6 -0.4493 -3.9592 -0.4530 30 1 -1.3519 -4.3511 0.0159 31 6 -0.1351 -2.5239 0.0005 32 1 -0.4850 0.8400 -0.0004 33 1 2.5289 -3.8525 0.9085 34 1 2.5679 -3.8286 -0.8737 35 1 0.4132 -6.5787 -1.2038 36 1 2.0965 -5.9687 -1.3389 37 1 0.3252 -5.3762 -3.2920 38 1 1.4309 -4.0997 -2.6976 39 1 -3.5791 -3.1865 -4.2431 40 1 -2.5489 -1.8038 -4.6832 41 1 -3.5605 -2.6211 -6.7304 42 1 -3.0986 -4.3001 -6.3470 43 1 1.7703 -2.5685 -6.8668 44 1 0.6819 -3.5685 -4.4118 45 1 -0.0639 -1.9529 -4.2982 46 1 -0.5763 -1.8088 -0.6938 47 1 -0.5246 -2.3567 1.0047 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076456752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:53 Heat of formation + Delta-G solvation = 46.066636 kcal Electronic energy + Delta-G solvation = -29831.930583 eV Core-core repulsion = 26015.649162 eV Total energy + Delta-G solvation = -3816.281421 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.46422 -41.53421 -39.54489 -37.02845 -36.44856 -34.03959 -33.12624 -32.31968 -31.45114 -30.74549 -29.49652 -27.84936 -26.55319 -25.67887 -24.28602 -23.07976 -22.26893 -21.89631 -20.85202 -20.00749 -19.52003 -18.88057 -18.52428 -18.04348 -17.09276 -16.80810 -16.33013 -16.11613 -15.72329 -15.62426 -15.10089 -14.79246 -14.59547 -14.45901 -14.40030 -14.03058 -13.79269 -13.71101 -13.60585 -13.29963 -12.98807 -12.96471 -12.85709 -12.76878 -12.69068 -12.35758 -12.05000 -11.98507 -11.87166 -11.80216 -11.79492 -11.50300 -11.37352 -11.22325 -10.76693 -10.55179 -10.31626 -9.47265 -9.36036 -8.82674 -7.76183 -5.19140 0.97999 1.42616 1.44024 1.54432 1.73767 1.77973 2.02818 2.19907 2.48810 3.35397 3.36420 3.51582 3.67901 3.78415 3.83843 3.86103 3.92221 4.06796 4.18089 4.29858 4.32030 4.39877 4.51297 4.53294 4.58193 4.64066 4.66927 4.75389 4.79052 4.83381 4.93902 4.99825 5.02401 5.03669 5.16498 5.19865 5.22351 5.25259 5.35557 5.37811 5.41769 5.51532 5.65881 5.69694 5.93399 6.33488 6.49773 6.74608 6.76157 7.11697 7.35769 7.83821 8.45266 9.26549 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.004457 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.898794 B = 6280.887529 C = 7281.204681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.233 4.233 8 H 0.087 0.913 9 N -0.617 5.617 10 C 0.136 3.864 11 C -0.098 4.098 12 H 0.118 0.882 13 C -0.107 4.107 14 C 0.095 3.905 15 N -0.599 5.599 16 C 0.521 3.479 17 O -0.587 6.587 18 C -0.084 4.084 19 H 0.126 0.874 20 C -0.092 4.092 21 C -0.029 4.029 22 C 0.073 3.927 23 N -0.320 5.320 24 N -0.476 5.476 25 H 0.453 0.547 26 C 0.079 3.921 27 C -0.255 4.255 28 C -0.023 4.023 29 C 0.116 3.884 30 H 0.074 0.926 31 C 0.166 3.834 32 H 0.240 0.760 33 H 0.022 0.978 34 H 0.041 0.959 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.210 0.790 44 H 0.096 0.904 45 H 0.036 0.964 46 H 0.060 0.940 47 H -0.029 1.029 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 -15.596 -14.564 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.343 5.343 10 C 0.012 3.988 11 C -0.118 4.118 12 H 0.136 0.864 13 C -0.145 4.145 14 C -0.027 4.027 15 N -0.331 5.331 16 C 0.311 3.689 17 O -0.467 6.467 18 C -0.105 4.105 19 H 0.144 0.856 20 C -0.131 4.131 21 C -0.068 4.068 22 C -0.095 4.095 23 N -0.143 5.143 24 N -0.186 5.186 25 H 0.300 0.700 26 C -0.068 4.068 27 C -0.266 4.266 28 C -0.062 4.062 29 C 0.011 3.989 30 H 0.092 0.908 31 C 0.039 3.961 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.109 0.891 42 H 0.125 0.875 43 H 0.227 0.773 44 H 0.114 0.886 45 H 0.055 0.945 46 H 0.078 0.922 47 H -0.011 1.011 Dipole moment (debyes) X Y Z Total from point charges 2.273 -15.069 -15.527 21.756 hybrid contribution 0.665 1.980 1.052 2.339 sum 2.938 -13.089 -14.475 19.735 Atomic orbital electron populations 1.70245 1.06468 1.24509 1.58565 1.25661 0.96343 1.01137 1.03035 0.85068 0.78529 0.79751 0.76391 1.18191 1.22449 1.22378 1.19461 0.90999 0.83539 1.42171 0.89504 1.44401 1.01871 1.01409 1.86636 1.21392 0.94821 0.84094 0.98528 1.23075 0.92173 0.95655 1.00848 0.86438 1.22855 1.04065 0.96740 0.90822 1.22674 0.87498 0.93820 0.98705 1.48367 1.24780 1.53634 1.06291 1.20925 0.80440 0.77265 0.90244 1.90683 1.37551 1.43125 1.75357 1.21241 0.97422 1.03519 0.88288 0.85619 1.21296 0.97494 0.99595 0.94716 1.20128 0.90459 1.03956 0.92280 1.22627 0.97490 0.98826 0.90551 1.76913 0.93391 1.25357 1.18623 1.46330 1.05191 1.58672 1.08415 0.70048 1.22542 1.00698 0.99151 0.84390 1.20070 0.93072 1.17388 0.96116 1.19852 0.96715 0.99865 0.89736 1.22380 0.98440 0.96517 0.81570 0.90802 1.21295 0.84684 0.93865 0.96238 0.95018 0.95954 0.94152 0.88286 0.87184 0.87438 0.92029 0.90288 0.93961 0.89100 0.87462 0.77321 0.88582 0.94523 0.92221 1.01068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.01 10.17 21.65 0.22 -60.79 16 2 C -0.07 -4.08 5.48 84.86 0.47 -3.61 16 3 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 7 C -0.23 -13.11 10.25 84.03 0.86 -12.25 16 8 H 0.09 4.60 7.83 -2.91 -0.02 4.57 16 9 N -0.62 -31.72 3.37 -698.79 -2.36 -34.08 16 10 C 0.14 5.13 6.39 86.65 0.55 5.68 16 11 C -0.10 -2.89 4.27 -9.01 -0.04 -2.93 16 12 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 13 C -0.11 -2.06 6.31 31.97 0.20 -1.86 16 14 C 0.09 2.23 4.67 86.84 0.41 2.63 16 15 N -0.60 -20.57 3.00 -785.62 -2.36 -22.92 16 16 C 0.52 19.65 6.82 87.66 0.60 20.24 16 17 O -0.59 -28.34 15.50 -3.03 -0.05 -28.39 16 18 C -0.08 -2.31 1.82 -11.40 -0.02 -2.33 16 19 H 0.13 2.62 7.79 -2.39 -0.02 2.60 16 20 C -0.09 -2.58 4.64 30.71 0.14 -2.44 16 21 C -0.03 -0.64 6.31 30.03 0.19 -0.45 16 22 C 0.07 1.82 7.10 43.44 0.31 2.13 16 23 N -0.32 -7.92 12.68 -47.14 -0.60 -8.52 16 24 N -0.48 -8.63 7.37 -57.89 -0.43 -9.06 16 25 H 0.45 4.87 8.96 -213.18 -1.91 2.96 16 26 C 0.08 1.45 11.95 83.34 1.00 2.45 16 27 C -0.26 -6.15 5.89 -20.10 -0.12 -6.27 16 28 C -0.02 -0.63 5.20 30.03 0.16 -0.47 16 29 C 0.12 4.53 3.65 46.00 0.17 4.70 16 30 H 0.07 2.88 8.14 -2.39 -0.02 2.87 16 31 C 0.17 8.80 5.17 86.60 0.45 9.25 16 32 H 0.24 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.04 1.40 6.78 -2.39 -0.02 1.39 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.59 7.96 -2.39 -0.02 1.57 16 37 H 0.11 1.75 7.23 -2.39 -0.02 1.74 16 38 H 0.06 1.62 6.64 -2.39 -0.02 1.61 16 39 H 0.08 2.25 7.69 -2.39 -0.02 2.24 16 40 H 0.04 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.10 2.21 5.40 -2.38 -0.01 2.19 16 45 H 0.04 1.30 8.12 -2.39 -0.02 1.28 16 46 H 0.06 3.76 5.31 -2.39 -0.01 3.74 16 47 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 Total: -1.00 -85.18 360.07 0.86 -84.31 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -0.91 Total: 15.69 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 5.32 Total: 14.46 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -5.52 Total: -135.38 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.05 Total: -28.39 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -85.18 0.86 -84.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076456752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.380 kcal (2) G-P(sol) polarization free energy of solvation -85.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds