Wall clock time and date at job start Tue Mar 31 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99568 * 2 1 4 4 H 1.48499 * 109.46632 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46973 * 300.00036 * 3 2 1 6 6 H 1.48494 * 109.47166 * 60.00061 * 3 2 1 7 7 C 1.38807 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00005 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.46970 * 125.23940 * 180.76379 * 9 7 2 11 11 C 1.53260 * 107.96089 * 178.26845 * 10 9 7 12 12 H 1.08997 * 112.58108 * 221.77759 * 11 10 9 13 13 C 1.54803 * 110.31352 * 95.01462 * 11 10 9 14 14 C 1.54937 * 101.49857 * 212.07341 * 13 11 10 15 15 N 1.47349 * 104.89401 * 37.23157 * 14 13 11 16 16 C 1.34782 * 125.52937 * 156.57216 * 15 14 13 17 17 O 1.21285 * 120.00064 * 179.97438 * 16 15 14 18 18 C 1.50696 * 119.99892 * 359.96683 * 16 15 14 19 19 H 1.08994 * 109.43176 * 300.09819 * 18 16 15 20 20 C 1.53027 * 109.42511 * 180.25671 * 18 16 15 21 21 C 1.53395 * 109.73408 * 168.19912 * 20 18 16 22 22 C 1.50946 * 108.19623 * 50.70681 * 21 20 18 23 23 N 1.30120 * 128.28897 * 163.14958 * 22 21 20 24 24 N 1.40308 * 108.12625 * 180.18423 * 23 22 21 25 25 H 0.97002 * 126.00555 * 179.97438 * 24 23 22 26 26 C 1.35198 * 107.99227 * 359.95711 * 24 23 22 27 27 C 1.34573 * 107.62094 * 359.97438 * 26 24 23 28 28 C 1.50875 * 128.33266 * 180.02562 * 27 26 24 29 29 C 1.47212 * 108.94108 * 336.54377 * 15 14 13 30 30 H 1.08997 * 112.72481 * 235.96410 * 29 15 14 31 31 C 1.46605 * 125.30632 * 0.02562 * 9 7 2 32 32 H 0.96999 * 120.00343 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.65004 * 58.16335 * 10 9 7 34 34 H 1.09001 * 108.99357 * 297.41555 * 10 9 7 35 35 H 1.09003 * 111.01587 * 330.12573 * 13 11 10 36 36 H 1.08999 * 111.02337 * 93.97921 * 13 11 10 37 37 H 1.09000 * 110.36071 * 156.08501 * 14 13 11 38 38 H 1.09003 * 110.35694 * 278.38156 * 14 13 11 39 39 H 1.09000 * 109.42857 * 288.29594 * 20 18 16 40 40 H 1.08995 * 109.42696 * 48.13165 * 20 18 16 41 41 H 1.08996 * 109.75542 * 291.00951 * 21 20 18 42 42 H 1.09006 * 109.71889 * 170.38163 * 21 20 18 43 43 H 1.07999 * 126.19077 * 179.97438 * 26 24 23 44 44 H 1.08998 * 109.71764 * 43.73654 * 28 27 26 45 45 H 1.09002 * 109.75634 * 283.11021 * 28 27 26 46 46 H 1.09008 * 109.91696 * 78.45436 * 31 9 7 47 47 H 1.08997 * 109.91615 * 317.17263 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.9412 -3.7225 0.0171 11 6 0.8154 -4.7618 0.0549 12 1 1.0275 -5.5839 0.7384 13 6 0.4843 -5.2477 -1.3772 14 6 -1.0335 -5.5367 -1.2620 15 7 -1.5552 -4.4765 -0.3817 16 6 -2.8324 -4.0476 -0.3442 17 8 -3.1535 -3.1649 0.4232 18 6 -3.8615 -4.6646 -1.2559 19 1 -3.5624 -4.5162 -2.2934 20 6 -5.2178 -3.9971 -1.0179 21 6 -6.1959 -4.4011 -2.1284 22 6 -6.1730 -5.9053 -2.2525 23 7 -7.0398 -6.6793 -2.8380 24 7 -6.6058 -8.0060 -2.6967 25 1 -7.0591 -8.7935 -3.0364 26 6 -5.4447 -7.9941 -2.0042 27 6 -5.1539 -6.7116 -1.7186 28 6 -3.9662 -6.1671 -0.9642 29 6 -0.4553 -3.9622 0.4506 30 1 -0.6701 -4.0240 1.5174 31 6 -0.1341 -2.5237 -0.0005 32 1 -0.4850 0.8400 0.0004 33 1 2.5803 -3.8402 0.8921 34 1 2.5316 -3.8521 -0.8900 35 1 0.6787 -4.4649 -2.1103 36 1 1.0382 -6.1544 -1.6203 37 1 -1.5056 -5.4814 -2.2429 38 1 -1.2000 -6.5168 -0.8149 39 1 -5.6136 -4.3141 -0.0530 40 1 -5.0943 -2.9142 -1.0201 41 1 -5.8890 -3.9496 -3.0718 42 1 -7.2017 -4.0685 -1.8716 43 1 -4.8569 -8.8576 -1.7300 44 1 -3.0578 -6.6701 -1.2958 45 1 -4.1047 -6.3256 0.1053 46 1 -0.5221 -2.3542 -1.0050 47 1 -0.5739 -1.8093 0.6954 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076456753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:57 Heat of formation + Delta-G solvation = 70.823957 kcal Electronic energy + Delta-G solvation = -29170.656295 eV Core-core repulsion = 25355.448432 eV Total energy + Delta-G solvation = -3815.207863 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66378 -40.13411 -38.15510 -35.94865 -34.91616 -32.62431 -31.99010 -30.60759 -30.60242 -29.27821 -28.19543 -26.66185 -24.78118 -24.49050 -23.08909 -21.89425 -21.22178 -20.36252 -19.57027 -18.93222 -18.49346 -17.84577 -16.99247 -16.52812 -15.65135 -15.46966 -15.19924 -14.79461 -14.49436 -14.05954 -13.88702 -13.66825 -13.40832 -13.31420 -13.11030 -12.90820 -12.60722 -12.41693 -12.15089 -12.03500 -11.82321 -11.74566 -11.48251 -11.15276 -11.05333 -10.99441 -10.87057 -10.76712 -10.45171 -10.33900 -10.11458 -9.97907 -9.73461 -9.65314 -9.55118 -9.24234 -8.60815 -8.55321 -8.10358 -6.77203 -5.57906 -3.00126 1.70297 2.55945 2.65363 3.09954 3.36009 3.44368 3.48993 3.52312 4.27549 4.53684 4.54638 4.64531 4.83030 4.84839 4.94855 5.01468 5.17318 5.20428 5.32909 5.36533 5.44571 5.49173 5.53376 5.59908 5.62917 5.68045 5.75936 5.81550 5.84590 5.88635 5.96905 6.03086 6.06481 6.19900 6.27082 6.31954 6.39288 6.50153 6.56184 6.66955 6.72569 6.92933 7.07753 7.49501 7.61070 7.69692 7.96632 8.06565 8.42975 8.67591 9.29369 9.89925 10.52256 11.46104 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.003116 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.304412 B = 8984.500960 C = 9979.703209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.145 3.855 11 C -0.109 4.109 12 H 0.085 0.915 13 C -0.123 4.123 14 C 0.102 3.898 15 N -0.607 5.607 16 C 0.529 3.471 17 O -0.525 6.525 18 C -0.099 4.099 19 H 0.096 0.904 20 C -0.097 4.097 21 C -0.040 4.040 22 C 0.087 3.913 23 N -0.292 5.292 24 N -0.488 5.488 25 H 0.438 0.562 26 C 0.060 3.940 27 C -0.231 4.231 28 C -0.034 4.034 29 C 0.114 3.886 30 H 0.081 0.919 31 C 0.167 3.833 32 H 0.252 0.748 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.176 0.824 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.020 0.980 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 -19.685 -5.046 22.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.129 4.129 12 H 0.103 0.897 13 C -0.161 4.161 14 C -0.021 4.021 15 N -0.341 5.341 16 C 0.317 3.683 17 O -0.400 6.400 18 C -0.120 4.120 19 H 0.114 0.886 20 C -0.135 4.135 21 C -0.079 4.079 22 C -0.082 4.082 23 N -0.114 5.114 24 N -0.196 5.196 25 H 0.281 0.719 26 C -0.085 4.085 27 C -0.242 4.242 28 C -0.073 4.073 29 C 0.010 3.990 30 H 0.099 0.901 31 C 0.041 3.959 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.193 0.807 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.038 0.962 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.773 -19.001 -5.283 22.472 hybrid contribution 1.044 0.177 0.123 1.066 sum -9.729 -18.824 -5.160 21.809 Atomic orbital electron populations 1.69939 1.04708 1.24779 1.56576 1.24848 0.95705 0.97721 1.02167 0.86052 0.78606 0.83888 0.77240 1.20561 1.21805 1.21729 1.19060 0.90431 0.82311 1.44119 0.90391 1.44282 1.01638 0.99856 1.87190 1.21045 0.93365 0.85600 0.98163 1.22845 0.95959 0.97848 0.96229 0.89656 1.22797 0.94072 1.01627 0.97627 1.22362 0.94898 0.90699 0.94154 1.48518 1.08022 1.37899 1.39686 1.20101 0.81501 0.82670 0.84049 1.90749 1.79277 1.30093 1.39926 1.21287 0.95008 0.95465 1.00254 0.88610 1.21397 0.92102 1.01799 0.98236 1.20212 1.01036 0.86398 1.00284 1.22472 0.92414 0.97117 0.96150 1.77010 1.22900 0.87170 1.24365 1.46313 1.19576 1.07439 1.46301 0.71884 1.22030 0.90074 0.99002 0.97442 1.20057 1.01367 0.92055 1.10732 1.20056 0.94892 0.93060 0.99273 1.22927 0.83979 0.97699 0.94376 0.90095 1.21654 0.84126 0.90123 0.99999 0.93714 0.95849 0.95712 0.89971 0.90499 0.91047 0.91727 0.90963 0.89398 0.89559 0.89611 0.80719 0.90218 0.90781 0.96241 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.81 10.17 55.49 0.56 -27.25 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 7 C -0.23 -6.52 10.25 -15.06 -0.15 -6.68 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.56 3.38 -171.91 -0.58 -16.15 16 10 C 0.14 2.91 6.71 -3.65 -0.02 2.89 16 11 C -0.11 -1.77 3.87 -88.34 -0.34 -2.11 16 12 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.12 -1.65 6.26 -24.76 -0.15 -1.81 16 14 C 0.10 1.24 5.12 -2.56 -0.01 1.23 16 15 N -0.61 -10.04 2.85 -161.68 -0.46 -10.50 16 16 C 0.53 9.16 7.01 -10.98 -0.08 9.09 16 17 O -0.53 -11.51 15.88 5.55 0.09 -11.42 16 18 C -0.10 -1.26 1.82 -91.55 -0.17 -1.43 16 19 H 0.10 1.17 7.80 -51.93 -0.40 0.76 16 20 C -0.10 -1.21 4.64 -26.51 -0.12 -1.34 16 21 C -0.04 -0.43 6.31 -27.56 -0.17 -0.61 16 22 C 0.09 1.02 7.10 -82.35 -0.58 0.43 16 23 N -0.29 -3.49 12.68 33.75 0.43 -3.06 16 24 N -0.49 -4.15 7.37 30.35 0.22 -3.93 16 25 H 0.44 2.22 8.96 -182.44 -1.64 0.58 16 26 C 0.06 0.48 11.95 -17.37 -0.21 0.27 16 27 C -0.23 -2.39 5.89 -104.98 -0.62 -3.01 16 28 C -0.03 -0.35 5.21 -27.58 -0.14 -0.50 16 29 C 0.11 2.22 3.87 -65.74 -0.25 1.97 16 30 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 31 C 0.17 4.21 4.80 -3.38 -0.02 4.20 16 32 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.49 7.77 -51.93 -0.40 0.09 16 35 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.77 7.30 -51.93 -0.38 0.39 16 38 H 0.06 0.62 7.23 -51.93 -0.38 0.25 16 39 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.09 1.23 7.69 -51.93 -0.40 0.83 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.08 0.70 5.38 -51.93 -0.28 0.42 16 45 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 46 H 0.02 0.55 7.94 -51.92 -0.41 0.14 16 47 H 0.09 2.83 6.22 -51.93 -0.32 2.51 16 LS Contribution 362.98 15.07 5.47 5.47 Total: -1.00 -36.01 362.98 -10.81 -46.82 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -8.37 Total: 0.22 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -3.15 Total: 2.29 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: 0.17 Total: -60.89 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.01 -10.81 -46.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076456753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.642 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds