Wall clock time and date at job start Tue Mar 31 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48501 * 109.47007 * 240.00125 * 3 2 1 5 5 H 1.48503 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46967 * 120.00139 * 3 2 1 7 7 C 1.38817 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64922 * 0.05029 * 9 7 2 11 11 C 1.54913 * 104.83013 * 204.08753 * 10 9 7 12 12 H 1.09001 * 111.00321 * 81.06466 * 11 10 9 13 13 O 1.42900 * 111.00095 * 204.91394 * 11 10 9 14 14 C 1.55153 * 101.58143 * 322.98962 * 11 10 9 15 15 H 1.09002 * 110.87507 * 277.06624 * 14 11 10 16 16 N 1.46498 * 110.71881 * 153.86299 * 14 11 10 17 17 C 1.34778 * 119.99908 * 160.01984 * 16 14 11 18 18 O 1.21275 * 120.00043 * 5.17185 * 17 16 14 19 19 C 1.50707 * 120.00055 * 184.89524 * 17 16 14 20 20 H 1.08999 * 109.24852 * 24.76671 * 19 17 16 21 21 C 1.52734 * 109.25626 * 144.24679 * 19 17 16 22 22 C 1.53327 * 108.36744 * 171.38465 * 21 19 17 23 23 C 1.52729 * 108.38698 * 290.07949 * 22 21 19 24 24 C 1.50634 * 110.59320 * 51.02899 * 23 22 21 25 25 C 1.38909 * 117.75280 * 162.54453 * 24 23 22 26 26 C 1.37932 * 120.54963 * 179.75542 * 25 24 23 27 27 C 1.38265 * 119.77409 * 359.97438 * 26 25 24 28 28 C 1.37938 * 119.76543 * 0.11706 * 27 26 25 29 29 C 1.37664 * 122.56877 * 342.48698 * 24 23 22 30 30 C 1.47022 * 125.64986 * 180.02562 * 9 7 2 31 31 H 0.97002 * 119.99778 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.36220 * 322.92549 * 10 9 7 33 33 H 1.09000 * 110.36204 * 85.13895 * 10 9 7 34 34 H 0.96696 * 113.99995 * 292.19453 * 13 11 10 35 35 H 0.97001 * 120.00254 * 340.03193 * 16 14 11 36 36 H 1.09002 * 109.68192 * 291.10400 * 21 19 17 37 37 H 1.08998 * 109.68374 * 51.66239 * 21 19 17 38 38 H 1.09005 * 109.68122 * 49.80638 * 22 21 19 39 39 H 1.08998 * 109.67926 * 170.32097 * 22 21 19 40 40 H 1.08991 * 109.25518 * 171.31792 * 23 22 21 41 41 H 1.09006 * 109.25454 * 290.78633 * 23 22 21 42 42 H 1.08005 * 119.72522 * 359.75644 * 25 24 23 43 43 H 1.08000 * 120.11276 * 180.02562 * 26 25 24 44 44 H 1.07993 * 120.11734 * 180.14242 * 27 26 25 45 45 H 1.08003 * 119.72603 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.88284 * 59.55953 * 30 9 7 47 47 H 1.09006 * 110.00929 * 298.47170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0011 11 6 -0.4018 -3.9325 0.6103 12 1 -0.3525 -3.8987 1.6987 13 8 -1.6568 -4.4573 0.1726 14 6 0.7783 -4.7524 0.0254 15 1 0.5482 -5.1001 -0.9818 16 7 1.1082 -5.8815 0.8987 17 6 1.8004 -6.9304 0.4116 18 8 2.2312 -6.8990 -0.7216 19 6 2.0445 -8.1396 1.2773 20 1 1.2690 -8.1971 2.0412 21 6 1.9936 -9.3971 0.4120 22 6 2.4552 -10.5871 1.2616 23 6 3.9525 -10.4394 1.5244 24 6 4.2632 -9.0667 2.0612 25 6 5.4857 -8.8812 2.6943 26 6 5.8316 -7.6466 3.2028 27 6 4.9554 -6.5840 3.0815 28 6 3.7402 -6.7666 2.4548 29 6 3.3889 -8.0098 1.9442 30 6 1.9317 -3.7275 -0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5995 -1.7590 0.6146 33 1 -0.5271 -2.4845 -1.0194 34 1 -2.4241 -3.9771 0.5128 35 1 0.8283 -5.8742 1.8274 36 1 0.9729 -9.5652 0.0684 37 1 2.6557 -9.2795 -0.4458 38 1 1.9151 -10.5938 2.2084 39 1 2.2662 -11.5167 0.7246 40 1 4.2654 -11.1888 2.2513 41 1 4.4978 -10.5923 0.5930 42 1 6.1709 -9.7106 2.7892 43 1 6.7841 -7.5102 3.6934 44 1 5.2216 -5.6144 3.4755 45 1 3.0561 -5.9362 2.3607 46 1 2.5577 -3.8511 0.8832 47 1 2.5304 -3.8660 -0.9009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077230290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:21 Heat of formation + Delta-G solvation = -41.100509 kcal Electronic energy + Delta-G solvation = -28793.058057 eV Core-core repulsion = 24940.704033 eV Total energy + Delta-G solvation = -3852.354023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78862 -39.15018 -37.78845 -36.02570 -35.08555 -34.07076 -32.85360 -31.60949 -30.36851 -29.23281 -28.35024 -26.99893 -24.86332 -24.00305 -22.83752 -22.55008 -20.84437 -20.44053 -19.96755 -19.37961 -17.46025 -17.06569 -16.77563 -16.49958 -15.74755 -15.58068 -15.45558 -14.84409 -14.58903 -14.23231 -14.03621 -13.86078 -13.59830 -13.40439 -13.31576 -13.01189 -12.86343 -12.60093 -12.28404 -12.22551 -11.91780 -11.79463 -11.53605 -11.51683 -11.27831 -11.12707 -11.00490 -10.83954 -10.82666 -10.49593 -10.22498 -9.93814 -9.79520 -9.73837 -9.28332 -8.83694 -8.77881 -8.72691 -8.63716 -6.93073 -5.73184 -3.15491 1.23283 1.28997 2.78790 3.27821 3.37909 3.42026 3.43470 3.68769 4.37615 4.40487 4.47271 4.59630 4.69518 4.76192 4.82041 4.96838 5.02674 5.11201 5.19413 5.27768 5.28238 5.35967 5.40664 5.49467 5.59878 5.64961 5.66310 5.68149 5.77671 5.82367 5.85886 5.92429 6.02558 6.07919 6.16682 6.19574 6.38800 6.44753 6.48483 6.51032 6.69047 6.90343 6.92178 7.29976 7.51157 7.66115 7.73036 8.07392 8.24092 8.40819 9.12980 9.73442 10.35949 11.31039 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.003272 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.051539 B = 8555.325536 C = 9901.090425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.068 3.932 12 H 0.062 0.938 13 O -0.566 6.566 14 C 0.143 3.857 15 H 0.098 0.902 16 N -0.716 5.716 17 C 0.522 3.478 18 O -0.531 6.531 19 C -0.064 4.064 20 H 0.098 0.902 21 C -0.106 4.106 22 C -0.117 4.117 23 C -0.081 4.081 24 C -0.069 4.069 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.115 4.115 29 C -0.066 4.066 30 C 0.132 3.868 31 H 0.254 0.746 32 H 0.113 0.887 33 H 0.025 0.975 34 H 0.377 0.623 35 H 0.397 0.603 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.029 0.971 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -20.214 8.487 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.007 3.993 12 H 0.079 0.921 13 O -0.371 6.371 14 C 0.038 3.962 15 H 0.116 0.884 16 N -0.367 5.367 17 C 0.307 3.693 18 O -0.407 6.407 19 C -0.085 4.085 20 H 0.116 0.884 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.118 4.118 24 C -0.069 4.069 25 C -0.142 4.142 26 C -0.137 4.137 27 C -0.136 4.136 28 C -0.133 4.133 29 C -0.067 4.067 30 C 0.005 3.995 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.043 0.957 34 H 0.224 0.776 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.047 0.953 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.309 -20.385 7.328 22.086 hybrid contribution 0.047 1.461 0.741 1.639 sum 4.355 -18.923 8.068 21.028 Atomic orbital electron populations 1.69726 1.04933 1.25073 1.57609 1.24794 0.95772 0.97798 1.02186 0.86101 0.78398 0.82722 0.77990 1.21089 1.21507 1.21095 1.19063 0.90591 0.82161 1.43285 0.90279 1.44282 1.01455 0.99790 1.87214 1.22546 0.85579 0.91923 0.99576 1.23635 0.82593 0.96085 0.96975 0.92056 1.86408 1.15569 1.58813 1.76284 1.22008 0.94095 0.85231 0.94856 0.88420 1.46146 1.56963 1.19379 1.14228 1.20353 0.77579 0.83650 0.87729 1.90701 1.49195 1.81215 1.19560 1.20200 0.95992 0.94677 0.97626 0.88398 1.21469 1.02749 0.91885 0.98302 1.21547 0.95414 0.98212 1.00312 1.20496 0.96995 0.93184 1.01152 1.19540 0.93843 0.95134 0.98409 1.21104 0.96171 0.97588 0.99320 1.21088 0.99488 0.93104 0.99975 1.21096 0.94087 0.99085 0.99319 1.21343 0.97548 0.96637 0.97805 1.19129 0.94846 0.93569 0.99114 1.21608 0.93668 0.85269 0.99001 0.93553 0.86975 0.95670 0.77574 0.76846 0.90996 0.89889 0.91504 0.90967 0.90743 0.90417 0.86188 0.86087 0.85804 0.85813 0.95342 0.94872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.88 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.35 3.39 -170.07 -0.58 -15.93 16 10 C 0.13 3.07 5.62 -2.52 -0.01 3.06 16 11 C 0.07 1.25 4.04 -24.58 -0.10 1.15 16 12 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 13 O -0.57 -9.55 13.47 -35.23 -0.47 -10.02 16 14 C 0.14 2.71 2.93 -66.10 -0.19 2.51 16 15 H 0.10 2.07 7.77 -51.93 -0.40 1.66 16 16 N -0.72 -10.86 4.30 -52.03 -0.22 -11.08 16 17 C 0.52 8.15 5.74 -10.98 -0.06 8.09 16 18 O -0.53 -10.48 15.89 5.56 0.09 -10.39 16 19 C -0.06 -0.76 2.56 -93.09 -0.24 -0.99 16 20 H 0.10 0.94 8.13 -51.93 -0.42 0.52 16 21 C -0.11 -1.14 5.07 -26.70 -0.14 -1.28 16 22 C -0.12 -0.95 5.98 -26.70 -0.16 -1.11 16 23 C -0.08 -0.69 5.67 -28.05 -0.16 -0.85 16 24 C -0.07 -0.76 5.74 -104.62 -0.60 -1.36 16 25 C -0.12 -1.26 9.61 -39.45 -0.38 -1.64 16 26 C -0.12 -1.24 10.05 -39.68 -0.40 -1.64 16 27 C -0.12 -1.40 10.05 -39.68 -0.40 -1.80 16 28 C -0.12 -1.50 9.04 -39.44 -0.36 -1.85 16 29 C -0.07 -0.82 5.42 -104.61 -0.57 -1.38 16 30 C 0.13 2.90 6.99 -3.07 -0.02 2.88 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.38 4.81 9.12 45.56 0.42 5.23 16 35 H 0.40 4.91 8.36 -40.82 -0.34 4.57 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.06 7.51 -51.93 -0.39 0.67 16 38 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.12 0.93 8.05 -52.48 -0.42 0.51 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.12 1.65 6.48 -52.48 -0.34 1.31 16 46 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 47 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -33.21 374.81 -10.43 -43.64 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.39 Total: 9.99 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.04 Total: -2.95 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.24 Total: -52.76 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.39 Total: -20.42 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.21 -10.43 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077230290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.538 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds