Wall clock time and date at job start Tue Mar 31 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48501 * 109.47007 * 240.00125 * 3 2 1 5 5 H 1.48503 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46967 * 120.00139 * 3 2 1 7 7 C 1.38817 * 119.99788 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99945 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.47431 * 125.64922 * 0.05029 * 9 7 2 11 11 C 1.54913 * 104.83013 * 204.08753 * 10 9 7 12 12 H 1.09001 * 111.00321 * 81.06466 * 11 10 9 13 13 O 1.42900 * 111.00095 * 204.91394 * 11 10 9 14 14 C 1.55153 * 101.58143 * 322.98962 * 11 10 9 15 15 H 1.09002 * 110.87507 * 277.06624 * 14 11 10 16 16 N 1.46498 * 110.71881 * 153.86299 * 14 11 10 17 17 C 1.34778 * 119.99908 * 160.01984 * 16 14 11 18 18 O 1.21275 * 120.00043 * 5.17185 * 17 16 14 19 19 C 1.50707 * 120.00055 * 184.89524 * 17 16 14 20 20 H 1.08999 * 109.24852 * 24.76671 * 19 17 16 21 21 C 1.52734 * 109.25626 * 144.24679 * 19 17 16 22 22 C 1.53327 * 108.36744 * 171.38465 * 21 19 17 23 23 C 1.52729 * 108.38698 * 290.07949 * 22 21 19 24 24 C 1.50634 * 110.59320 * 51.02899 * 23 22 21 25 25 C 1.38909 * 117.75280 * 162.54453 * 24 23 22 26 26 C 1.37932 * 120.54963 * 179.75542 * 25 24 23 27 27 C 1.38265 * 119.77409 * 359.97438 * 26 25 24 28 28 C 1.37938 * 119.76543 * 0.11706 * 27 26 25 29 29 C 1.37664 * 122.56877 * 342.48698 * 24 23 22 30 30 C 1.47022 * 125.64986 * 180.02562 * 9 7 2 31 31 H 0.97002 * 119.99778 * 0.02562 * 1 2 3 32 32 H 1.08999 * 110.36220 * 322.92549 * 10 9 7 33 33 H 1.09000 * 110.36204 * 85.13895 * 10 9 7 34 34 H 0.96696 * 113.99995 * 292.19453 * 13 11 10 35 35 H 0.97001 * 120.00254 * 340.03193 * 16 14 11 36 36 H 1.09002 * 109.68192 * 291.10400 * 21 19 17 37 37 H 1.08998 * 109.68374 * 51.66239 * 21 19 17 38 38 H 1.09005 * 109.68122 * 49.80638 * 22 21 19 39 39 H 1.08998 * 109.67926 * 170.32097 * 22 21 19 40 40 H 1.08991 * 109.25518 * 171.31792 * 23 22 21 41 41 H 1.09006 * 109.25454 * 290.78633 * 23 22 21 42 42 H 1.08005 * 119.72522 * 359.75644 * 25 24 23 43 43 H 1.08000 * 120.11276 * 180.02562 * 26 25 24 44 44 H 1.07993 * 120.11734 * 180.14242 * 27 26 25 45 45 H 1.08003 * 119.72603 * 179.97438 * 28 27 26 46 46 H 1.08998 * 109.88284 * 59.55953 * 30 9 7 47 47 H 1.09006 * 110.00929 * 298.47170 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1416 -2.5332 -0.0011 11 6 -0.4018 -3.9325 0.6103 12 1 -0.3525 -3.8987 1.6987 13 8 -1.6568 -4.4573 0.1726 14 6 0.7783 -4.7524 0.0254 15 1 0.5482 -5.1001 -0.9818 16 7 1.1082 -5.8815 0.8987 17 6 1.8004 -6.9304 0.4116 18 8 2.2312 -6.8990 -0.7216 19 6 2.0445 -8.1396 1.2773 20 1 1.2690 -8.1971 2.0412 21 6 1.9936 -9.3971 0.4120 22 6 2.4552 -10.5871 1.2616 23 6 3.9525 -10.4394 1.5244 24 6 4.2632 -9.0667 2.0612 25 6 5.4857 -8.8812 2.6943 26 6 5.8316 -7.6466 3.2028 27 6 4.9554 -6.5840 3.0815 28 6 3.7402 -6.7666 2.4548 29 6 3.3889 -8.0098 1.9442 30 6 1.9317 -3.7275 -0.0005 31 1 -0.4850 0.8401 -0.0004 32 1 -0.5995 -1.7590 0.6146 33 1 -0.5271 -2.4845 -1.0194 34 1 -2.4241 -3.9771 0.5128 35 1 0.8283 -5.8742 1.8274 36 1 0.9729 -9.5652 0.0684 37 1 2.6557 -9.2795 -0.4458 38 1 1.9151 -10.5938 2.2084 39 1 2.2662 -11.5167 0.7246 40 1 4.2654 -11.1888 2.2513 41 1 4.4978 -10.5923 0.5930 42 1 6.1709 -9.7106 2.7892 43 1 6.7841 -7.5102 3.6934 44 1 5.2216 -5.6144 3.4755 45 1 3.0561 -5.9362 2.3607 46 1 2.5577 -3.8511 0.8832 47 1 2.5304 -3.8660 -0.9009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077230290.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:20 Heat of formation + Delta-G solvation = -63.696851 kcal Electronic energy + Delta-G solvation = -28794.037907 eV Core-core repulsion = 24940.704033 eV Total energy + Delta-G solvation = -3853.333874 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.84141 -40.39485 -39.27996 -36.86333 -36.70116 -35.62466 -34.00245 -33.29522 -31.17335 -30.40953 -29.85533 -28.71617 -26.55612 -25.15010 -23.63296 -23.50877 -22.52835 -21.85746 -21.46963 -20.22781 -19.14756 -18.58905 -18.13633 -17.57418 -17.23934 -16.69788 -16.42805 -16.27743 -15.90270 -15.58547 -15.38917 -14.99761 -14.83160 -14.72693 -14.53916 -14.18552 -14.02677 -13.88202 -13.74975 -13.36352 -13.25010 -13.17584 -12.98011 -12.84960 -12.72124 -12.60418 -12.31373 -12.12150 -11.95041 -11.87087 -11.67900 -11.47152 -11.25962 -11.17270 -10.81256 -10.76292 -10.23043 -9.69848 -9.48672 -9.00566 -7.84455 -5.31031 0.37587 0.44146 1.45466 1.48717 1.53726 1.55273 2.01749 2.45069 2.81666 3.04390 3.26781 3.49492 3.57557 3.64314 3.76236 3.88443 3.95641 3.99989 4.06048 4.14772 4.16874 4.23568 4.34448 4.39239 4.42402 4.53310 4.57194 4.59094 4.73211 4.80270 4.90092 4.95756 5.00041 5.01380 5.10172 5.16538 5.28363 5.34482 5.38756 5.40807 5.45623 5.56172 5.61207 5.64810 5.67737 6.09433 6.18357 6.46215 6.84528 7.02208 7.16535 7.65846 8.28306 9.17044 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.003272 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.051539 B = 8555.325536 C = 9901.090425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.983 3.017 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.078 0.922 9 N -0.618 5.618 10 C 0.133 3.867 11 C 0.094 3.906 12 H 0.088 0.912 13 O -0.567 6.567 14 C 0.157 3.843 15 H 0.074 0.926 16 N -0.703 5.703 17 C 0.521 3.479 18 O -0.577 6.577 19 C -0.054 4.054 20 H 0.125 0.875 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.082 4.082 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.121 4.121 27 C -0.135 4.135 28 C -0.138 4.138 29 C -0.083 4.083 30 C 0.135 3.865 31 H 0.251 0.749 32 H 0.092 0.908 33 H -0.009 1.009 34 H 0.398 0.602 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.128 0.872 45 H 0.112 0.888 46 H 0.036 0.964 47 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -22.281 10.418 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.811 3.189 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.345 5.345 10 C 0.007 3.993 11 C 0.033 3.967 12 H 0.106 0.894 13 O -0.374 6.374 14 C 0.051 3.949 15 H 0.092 0.908 16 N -0.355 5.355 17 C 0.308 3.692 18 O -0.456 6.456 19 C -0.075 4.075 20 H 0.143 0.857 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.119 4.119 24 C -0.076 4.076 25 C -0.143 4.143 26 C -0.139 4.139 27 C -0.153 4.153 28 C -0.156 4.156 29 C -0.084 4.084 30 C 0.008 3.992 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.009 0.991 34 H 0.248 0.752 35 H 0.252 0.748 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.166 0.834 43 H 0.162 0.838 44 H 0.146 0.854 45 H 0.130 0.870 46 H 0.054 0.946 47 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 4.796 -22.478 9.302 24.795 hybrid contribution -0.083 2.101 0.096 2.105 sum 4.714 -20.377 9.398 22.929 Atomic orbital electron populations 1.69946 1.06065 1.25526 1.57854 1.25623 0.96739 1.00861 1.01902 0.85088 0.77200 0.78451 0.78178 1.20891 1.21410 1.19914 1.19391 0.90987 0.83481 1.43827 0.90403 1.44529 1.02430 1.00461 1.87109 1.22385 0.84522 0.94763 0.97599 1.23219 0.83258 0.92444 0.97744 0.89400 1.86380 1.15638 1.58742 1.76663 1.21524 0.93120 0.85584 0.94669 0.90816 1.45958 1.56791 1.18173 1.14578 1.21130 0.76164 0.84371 0.87489 1.90681 1.50922 1.82142 1.21853 1.20234 0.96892 0.92822 0.97594 0.85699 1.21493 1.02647 0.92577 0.97775 1.21543 0.95170 0.97510 1.00504 1.20585 0.97332 0.92240 1.01695 1.19914 0.93764 0.95972 0.97957 1.21485 0.96259 0.98292 0.98287 1.21413 1.00053 0.92849 0.99590 1.21289 0.94247 1.00023 0.99766 1.21396 0.98171 0.96829 0.99207 1.19245 0.95426 0.93945 0.99759 1.21621 0.94670 0.84902 0.98002 0.93884 0.88997 0.99109 0.75177 0.74815 0.90434 0.92485 0.90241 0.89027 0.88228 0.90431 0.83391 0.83787 0.85408 0.87023 0.94561 0.97372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.89 10.09 21.65 0.22 -54.67 16 2 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 3 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.25 -14.17 10.27 84.04 0.86 -13.30 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -32.68 3.39 -691.97 -2.35 -35.03 16 10 C 0.13 6.51 5.62 86.86 0.49 7.00 16 11 C 0.09 3.45 4.04 31.99 0.13 3.58 16 12 H 0.09 2.83 8.00 -2.39 -0.02 2.81 16 13 O -0.57 -18.42 13.47 -148.98 -2.01 -20.42 16 14 C 0.16 6.06 2.93 46.18 0.14 6.20 16 15 H 0.07 3.24 7.77 -2.39 -0.02 3.22 16 16 N -0.70 -21.06 4.30 -436.93 -1.88 -22.94 16 17 C 0.52 16.32 5.74 87.66 0.50 16.82 16 18 O -0.58 -23.58 15.89 -3.01 -0.05 -23.63 16 19 C -0.05 -1.23 2.56 -12.39 -0.03 -1.26 16 20 H 0.13 2.09 8.13 -2.39 -0.02 2.07 16 21 C -0.11 -2.15 5.07 30.62 0.16 -1.99 16 22 C -0.11 -1.44 5.98 30.61 0.18 -1.26 16 23 C -0.08 -1.14 5.67 29.74 0.17 -0.97 16 24 C -0.08 -1.51 5.74 -19.86 -0.11 -1.62 16 25 C -0.13 -2.23 9.61 22.36 0.21 -2.01 16 26 C -0.12 -2.32 10.05 22.20 0.22 -2.10 16 27 C -0.14 -3.14 10.05 22.20 0.22 -2.92 16 28 C -0.14 -3.55 9.04 22.36 0.20 -3.35 16 29 C -0.08 -1.97 5.42 -19.86 -0.11 -2.08 16 30 C 0.13 6.16 6.99 86.73 0.61 6.77 16 31 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 32 H 0.09 4.89 5.87 -2.39 -0.01 4.87 16 33 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.40 9.44 9.12 -74.06 -0.68 8.77 16 35 H 0.41 9.63 8.36 -92.71 -0.78 8.85 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.45 7.51 -2.39 -0.02 1.43 16 38 H 0.08 0.88 8.10 -2.38 -0.02 0.86 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 0.92 8.12 -2.39 -0.02 0.90 16 41 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.15 1.74 8.05 -2.91 -0.02 1.72 16 43 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 45 H 0.11 3.02 6.48 -2.91 -0.02 3.00 16 46 H 0.04 1.60 8.03 -2.39 -0.02 1.58 16 47 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -74.78 374.81 -0.19 -74.96 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.46 Total: 29.64 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 4.31 Total: 4.69 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.01 Total: -112.64 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -2.05 Total: -44.05 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -74.78 -0.19 -74.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077230290.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.268 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds