Wall clock time and date at job start Tue Mar 31 2020 05:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48495 * 109.47164 * 274.92811 * 3 2 1 5 5 H 1.48498 * 109.47537 * 34.92810 * 3 2 1 6 6 H 1.48508 * 109.46909 * 154.92725 * 3 2 1 7 7 C 1.38805 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99826 * 170.35886 * 7 2 1 9 9 N 1.36936 * 120.00045 * 350.34889 * 7 2 1 10 10 C 1.47422 * 125.64994 * 346.29551 * 9 7 2 11 11 C 1.55122 * 104.94217 * 203.96213 * 10 9 7 12 12 H 1.08995 * 110.93667 * 81.21359 * 11 10 9 13 13 O 1.42906 * 111.16039 * 205.12870 * 11 10 9 14 14 C 1.55155 * 101.48634 * 323.21911 * 11 10 9 15 15 H 1.08996 * 110.71931 * 276.83129 * 14 11 10 16 16 N 1.46500 * 110.72148 * 153.73652 * 14 11 10 17 17 C 1.34772 * 120.00547 * 157.44091 * 16 14 11 18 18 O 1.21289 * 119.99761 * 5.37150 * 17 16 14 19 19 C 1.50691 * 120.00419 * 185.09546 * 17 16 14 20 20 H 1.08999 * 109.25035 * 336.54107 * 19 17 16 21 21 C 1.52736 * 109.25457 * 217.06944 * 19 17 16 22 22 C 1.53335 * 108.37339 * 188.64082 * 21 19 17 23 23 C 1.52739 * 108.37242 * 69.92282 * 22 21 19 24 24 C 1.50628 * 110.58990 * 308.94093 * 23 22 21 25 25 C 1.38912 * 117.75070 * 197.46607 * 24 23 22 26 26 C 1.37936 * 120.54888 * 180.19523 * 25 24 23 27 27 C 1.38264 * 119.76890 * 0.05128 * 26 25 24 28 28 C 1.37931 * 119.77327 * 359.88751 * 27 26 25 29 29 C 1.37607 * 122.55717 * 17.57433 * 24 23 22 30 30 C 1.47027 * 125.64838 * 166.24676 * 9 7 2 31 31 H 0.96998 * 119.99888 * 0.02562 * 1 2 3 32 32 H 1.09001 * 110.36615 * 322.92549 * 10 9 7 33 33 H 1.08996 * 110.36895 * 85.13770 * 10 9 7 34 34 H 0.96703 * 113.99818 * 292.16627 * 13 11 10 35 35 H 0.97006 * 119.99443 * 337.43966 * 16 14 11 36 36 H 1.08999 * 109.68769 * 308.35780 * 21 19 17 37 37 H 1.08996 * 109.68352 * 68.88396 * 21 19 17 38 38 H 1.08992 * 109.68629 * 189.64753 * 22 21 19 39 39 H 1.09004 * 109.68100 * 310.17218 * 22 21 19 40 40 H 1.08996 * 109.25395 * 69.23542 * 23 22 21 41 41 H 1.09003 * 109.25093 * 188.65571 * 23 22 21 42 42 H 1.08005 * 119.72762 * 0.22787 * 25 24 23 43 43 H 1.07994 * 120.11394 * 180.02562 * 26 25 24 44 44 H 1.08002 * 120.11261 * 179.87611 * 27 26 25 45 45 H 1.07995 * 119.73273 * 180.02562 * 28 27 26 46 46 H 1.08997 * 109.88263 * 59.56205 * 30 9 7 47 47 H 1.09006 * 109.87710 * 298.39583 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3935 2.1066 -1.3948 5 1 1.5037 2.6204 0.8016 6 1 3.5960 1.4124 0.5933 7 6 2.0102 -1.2021 -0.0005 8 1 3.0788 -1.2086 -0.1572 9 7 1.3401 -2.3797 0.1977 10 6 -0.0400 -2.5089 0.6998 11 6 -0.1098 -3.9306 1.3164 12 1 0.3102 -3.9400 2.3222 13 8 -1.4500 -4.4267 1.3185 14 6 0.7803 -4.7373 0.3345 15 1 0.2087 -5.0434 -0.5416 16 7 1.3648 -5.9027 1.0027 17 6 1.7776 -6.9598 0.2757 18 8 1.7559 -6.9081 -0.9359 19 6 2.2720 -8.2036 0.9680 20 1 2.6159 -7.9449 1.9694 21 6 3.4347 -8.7941 0.1730 22 6 3.7795 -10.1651 0.7670 23 6 2.6431 -11.1315 0.4386 24 6 1.3148 -10.5408 0.8328 25 6 0.2330 -11.4039 0.9525 26 6 -1.0109 -10.9242 1.3064 27 6 -1.1837 -9.5730 1.5432 28 6 -0.1105 -8.7144 1.4262 29 6 1.1437 -9.1964 1.0713 30 6 1.8774 -3.7246 -0.0557 31 1 -0.4850 0.8400 -0.0004 32 1 -0.2391 -1.7542 1.4606 33 1 -0.7522 -2.4170 -0.1202 34 1 -2.0436 -3.9535 1.9175 35 1 1.4547 -5.9135 1.9686 36 1 3.1447 -8.9090 -0.8714 37 1 4.2999 -8.1349 0.2433 38 1 4.7095 -10.5305 0.3317 39 1 3.8887 -10.0798 1.8482 40 1 2.6425 -11.3351 -0.6321 41 1 2.7968 -12.0644 0.9810 42 1 0.3670 -12.4595 0.7673 43 1 -1.8470 -11.6016 1.3978 44 1 -2.1556 -9.1911 1.8187 45 1 -0.2461 -7.6592 1.6117 46 1 2.7670 -3.8890 0.5522 47 1 2.1227 -3.8326 -1.1123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077230291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:24 Heat of formation + Delta-G solvation = -44.130411 kcal Electronic energy + Delta-G solvation = -28670.128630 eV Core-core repulsion = 24817.643220 eV Total energy + Delta-G solvation = -3852.485410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79282 -39.16774 -37.80023 -36.03369 -35.10776 -34.05883 -32.86096 -31.61932 -30.38660 -29.25803 -28.33226 -27.07163 -24.85490 -23.98758 -22.85052 -22.56109 -20.87681 -20.49744 -19.97661 -19.39352 -17.46565 -17.05370 -16.78179 -16.47512 -15.80978 -15.59722 -15.44412 -14.79093 -14.64868 -14.26987 -14.04615 -13.81013 -13.65962 -13.38105 -13.34211 -13.04417 -12.84887 -12.61394 -12.33475 -12.23075 -12.03241 -11.81616 -11.54399 -11.53413 -11.23992 -11.13944 -10.95681 -10.85573 -10.85268 -10.50348 -10.19817 -9.97404 -9.86479 -9.78808 -9.33750 -8.85739 -8.77435 -8.68137 -8.65144 -6.86784 -5.82343 -3.17481 1.20823 1.26757 2.78116 3.26519 3.36426 3.42183 3.44175 3.66548 4.37150 4.39634 4.46347 4.56382 4.68816 4.75403 4.80635 4.95694 5.00911 5.09414 5.19452 5.23518 5.26845 5.35292 5.38780 5.47711 5.56201 5.63772 5.65662 5.67605 5.76933 5.81603 5.82564 5.91005 6.01485 6.06524 6.13455 6.18461 6.36323 6.43264 6.47115 6.49203 6.70524 6.88766 6.91069 7.19577 7.44228 7.66901 7.69747 8.03682 8.16884 8.40317 9.09979 9.71758 10.38111 11.30845 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.002873 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.763452 B = 9743.996741 C =10790.440035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.152 3.848 11 C 0.066 3.934 12 H 0.061 0.939 13 O -0.564 6.564 14 C 0.144 3.856 15 H 0.100 0.900 16 N -0.716 5.716 17 C 0.522 3.478 18 O -0.530 6.530 19 C -0.063 4.063 20 H 0.098 0.902 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.082 4.082 24 C -0.068 4.068 25 C -0.125 4.125 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.114 4.114 29 C -0.066 4.066 30 C 0.130 3.870 31 H 0.254 0.746 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.377 0.623 35 H 0.397 0.603 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.030 0.970 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -22.556 7.432 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.026 3.974 11 C 0.006 3.994 12 H 0.079 0.921 13 O -0.368 6.368 14 C 0.039 3.961 15 H 0.118 0.882 16 N -0.367 5.367 17 C 0.307 3.693 18 O -0.406 6.406 19 C -0.085 4.085 20 H 0.116 0.884 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.119 4.119 24 C -0.068 4.068 25 C -0.143 4.143 26 C -0.137 4.137 27 C -0.137 4.137 28 C -0.132 4.132 29 C -0.066 4.066 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.224 0.776 35 H 0.231 0.769 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.048 0.952 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.709 -22.713 6.087 23.576 hybrid contribution 0.043 1.418 0.862 1.660 sum 1.751 -21.294 6.949 22.468 Atomic orbital electron populations 1.69940 1.05035 1.25425 1.55892 1.24897 0.95649 0.98001 1.01620 0.86099 0.78758 0.83252 0.77627 1.21458 1.21566 1.20496 1.19020 0.91097 0.82438 1.43525 0.90465 1.44258 1.12239 1.00036 1.76007 1.21970 0.87601 0.90116 0.97687 1.23620 0.81948 0.96506 0.97362 0.92104 1.86433 1.20775 1.60915 1.68695 1.21977 0.93723 0.84411 0.95972 0.88248 1.46128 1.63158 1.17176 1.10261 1.20344 0.77270 0.83837 0.87864 1.90709 1.53683 1.82333 1.13878 1.20184 0.95240 0.92254 1.00797 0.88443 1.21487 0.96224 0.96201 1.00606 1.21550 0.97890 0.94833 1.01219 1.20502 0.91210 0.98377 1.01775 1.19535 0.95708 0.92459 0.99146 1.21104 0.92667 0.99356 1.01127 1.21085 0.97152 0.95664 0.99829 1.21073 0.98823 0.93518 1.00332 1.21389 0.92339 1.00459 0.99005 1.19129 0.93922 0.92863 1.00702 1.21649 0.94194 0.85357 0.98523 0.93566 0.91437 0.93919 0.77642 0.76859 0.89884 0.90903 0.90944 0.91497 0.90406 0.90749 0.86198 0.86140 0.85925 0.85524 0.95232 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.84 55.49 0.60 -25.93 16 2 C 0.00 -0.13 5.38 -17.43 -0.09 -0.22 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.78 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.47 10.22 -15.06 -0.15 -6.62 16 8 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 9 N -0.60 -15.24 3.39 -169.94 -0.58 -15.81 16 10 C 0.15 3.57 5.12 -2.42 -0.01 3.56 16 11 C 0.07 1.19 4.06 -24.47 -0.10 1.09 16 12 H 0.06 0.99 8.00 -51.93 -0.42 0.58 16 13 O -0.56 -9.26 13.48 -35.23 -0.47 -9.73 16 14 C 0.14 2.69 2.96 -66.10 -0.20 2.50 16 15 H 0.10 2.12 7.70 -51.93 -0.40 1.72 16 16 N -0.72 -10.64 4.31 -52.04 -0.22 -10.86 16 17 C 0.52 8.06 5.70 -10.99 -0.06 8.00 16 18 O -0.53 -10.45 15.87 5.55 0.09 -10.36 16 19 C -0.06 -0.74 2.59 -93.09 -0.24 -0.98 16 20 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 21 C -0.11 -1.15 5.08 -26.69 -0.14 -1.29 16 22 C -0.12 -0.95 5.98 -26.69 -0.16 -1.11 16 23 C -0.08 -0.68 5.67 -28.05 -0.16 -0.84 16 24 C -0.07 -0.73 5.74 -104.64 -0.60 -1.33 16 25 C -0.12 -1.22 9.61 -39.44 -0.38 -1.60 16 26 C -0.12 -1.19 10.05 -39.68 -0.40 -1.58 16 27 C -0.12 -1.34 10.05 -39.68 -0.40 -1.73 16 28 C -0.11 -1.42 9.04 -39.42 -0.36 -1.78 16 29 C -0.07 -0.79 5.42 -104.61 -0.57 -1.36 16 30 C 0.13 2.83 7.00 -3.06 -0.02 2.81 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.07 1.70 7.20 -51.93 -0.37 1.32 16 33 H 0.04 1.13 7.98 -51.93 -0.41 0.71 16 34 H 0.38 4.63 9.12 45.56 0.42 5.05 16 35 H 0.40 4.73 8.48 -40.82 -0.35 4.38 16 36 H 0.08 1.06 7.51 -51.93 -0.39 0.67 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.12 0.89 8.05 -52.48 -0.42 0.47 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.13 1.64 6.65 -52.49 -0.35 1.30 16 46 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 47 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -33.70 376.30 -10.43 -44.13 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.46 Total: 8.61 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -4.03 Total: -2.50 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.20 Total: -52.60 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.39 Total: -20.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.70 -10.43 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077230291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.000 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds