Wall clock time and date at job start Tue Mar 31 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48504 * 109.47143 * 239.99682 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47523 * 119.99198 * 3 2 1 7 7 C 1.38817 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99761 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99969 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64903 * 0.05095 * 9 7 2 11 11 C 1.54913 * 104.83037 * 204.08543 * 10 9 7 12 12 H 1.08992 * 111.00584 * 81.06586 * 11 10 9 13 13 O 1.42899 * 110.99858 * 204.91346 * 11 10 9 14 14 C 1.55156 * 101.58230 * 322.98704 * 11 10 9 15 15 H 1.08996 * 110.72066 * 277.14543 * 14 11 10 16 16 N 1.46493 * 110.71921 * 153.86420 * 14 11 10 17 17 C 1.34782 * 120.00032 * 155.00232 * 16 14 11 18 18 O 1.21279 * 119.99896 * 354.95808 * 17 16 14 19 19 C 1.50693 * 119.99966 * 174.95845 * 17 16 14 20 20 C 1.50701 * 112.85223 * 55.72234 * 19 17 16 21 21 C 1.38236 * 120.00136 * 245.88301 * 20 19 17 22 22 C 1.38236 * 120.00015 * 179.76791 * 21 20 19 23 23 C 1.38237 * 119.99566 * 0.50397 * 22 21 20 24 24 C 1.38227 * 120.00299 * 359.74807 * 23 22 21 25 25 C 1.38231 * 120.00372 * 0.02562 * 24 23 22 26 26 C 1.53787 * 113.61424 * 284.52509 * 19 17 16 27 27 C 1.54057 * 86.98484 * 270.83853 * 26 19 17 28 28 C 1.53779 * 87.07765 * 334.57005 * 27 26 19 29 29 C 1.47016 * 125.64694 * 179.97438 * 9 7 2 30 30 H 0.96994 * 119.99926 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36741 * 85.24718 * 10 9 7 32 32 H 1.09003 * 110.36657 * 322.91998 * 10 9 7 33 33 H 0.96700 * 114.00277 * 292.19518 * 13 11 10 34 34 H 0.96999 * 120.00253 * 335.00777 * 16 14 11 35 35 H 1.08002 * 119.99453 * 359.97438 * 21 20 19 36 36 H 1.08000 * 119.99819 * 180.23064 * 22 21 20 37 37 H 1.08005 * 119.99625 * 179.72973 * 23 22 21 38 38 H 1.08007 * 120.00049 * 179.97438 * 24 23 22 39 39 H 1.07992 * 120.00551 * 179.97438 * 25 24 23 40 40 H 1.08994 * 113.61242 * 25.43650 * 26 19 17 41 41 H 1.08999 * 113.61211 * 156.33824 * 26 19 17 42 42 H 1.08996 * 113.62040 * 220.02499 * 27 26 19 43 43 H 1.08998 * 113.68336 * 89.12399 * 27 26 19 44 44 H 1.09002 * 113.61414 * 270.88102 * 28 27 26 45 45 H 1.08999 * 113.69295 * 139.98582 * 28 27 26 46 46 H 1.08996 * 109.88396 * 59.56859 * 29 9 7 47 47 H 1.09001 * 110.01123 * 298.47264 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 -0.0011 11 6 -0.4022 -3.9323 0.6107 12 1 -0.3538 -3.8981 1.6990 13 8 -1.6569 -4.4572 0.1722 14 6 0.7784 -4.7525 0.0269 15 1 0.5469 -5.0981 -0.9805 16 7 1.1075 -5.8812 0.9009 17 6 1.7105 -6.9740 0.3922 18 8 1.8980 -7.0621 -0.8028 19 6 2.1517 -8.0862 1.3081 20 6 1.0290 -8.6260 2.1562 21 6 1.0574 -8.4593 3.5282 22 6 0.0252 -8.9502 4.3056 23 6 -1.0303 -9.6170 3.7121 24 6 -1.0561 -9.7883 2.3407 25 6 -0.0263 -9.2933 1.5627 26 6 3.4243 -7.7583 2.1069 27 6 4.2194 -8.3446 0.9247 28 6 2.9694 -9.1794 0.6002 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5262 -2.4870 -1.0199 32 1 -0.6000 -1.7588 0.6140 33 1 -2.4245 -3.9769 0.5116 34 1 0.8915 -5.8421 1.8457 35 1 1.8845 -7.9425 3.9923 36 1 0.0456 -8.8167 5.3772 37 1 -1.8346 -10.0044 4.3199 38 1 -1.8806 -10.3097 1.8770 39 1 -0.0462 -9.4275 0.4914 40 1 3.5835 -6.6904 2.2553 41 1 3.5225 -8.3339 3.0273 42 1 5.0774 -8.9436 1.2297 43 1 4.4663 -7.6116 0.1567 44 1 2.9435 -10.1428 1.1095 45 1 2.7606 -9.2589 -0.4667 46 1 2.5576 -3.8511 0.8843 47 1 2.5304 -3.8659 -0.8998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077341961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:36 Heat of formation + Delta-G solvation = -6.182046 kcal Electronic energy + Delta-G solvation = -28975.571620 eV Core-core repulsion = 25124.731774 eV Total energy + Delta-G solvation = -3850.839845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09551 -39.01156 -38.14317 -36.90092 -35.06817 -34.04307 -31.84525 -31.27698 -31.08656 -28.53770 -27.23605 -26.07316 -25.86588 -24.35364 -22.60790 -22.06274 -21.46462 -20.63373 -20.02488 -19.02056 -17.60073 -17.10007 -16.89276 -16.50172 -15.75697 -15.49050 -15.11157 -15.01344 -14.71892 -14.38152 -14.16233 -13.74552 -13.59293 -13.51424 -13.19106 -12.92060 -12.86700 -12.56113 -12.33424 -12.04587 -11.89194 -11.74520 -11.50688 -11.29208 -11.24710 -11.05342 -11.00753 -10.83191 -10.58025 -10.41097 -10.22996 -9.93597 -9.82887 -9.71393 -9.29726 -9.07346 -8.84962 -8.72969 -8.67700 -6.93674 -5.73267 -3.16040 1.15697 1.24784 2.74526 3.27297 3.37502 3.41723 3.43035 3.61784 4.29999 4.38830 4.44675 4.50490 4.62275 4.68355 4.73816 4.84422 4.91877 4.98698 5.22194 5.29467 5.40212 5.41185 5.44074 5.51902 5.59799 5.63736 5.66266 5.78224 5.79875 5.86297 5.87697 5.95912 5.98106 6.08594 6.19739 6.23220 6.32783 6.36301 6.43723 6.48547 6.63596 6.82517 6.93050 7.31121 7.50827 7.67483 7.75361 8.10682 8.24453 8.41586 9.12404 9.72950 10.35512 11.30777 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.003280 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.474677 B = 8535.807281 C = 9302.946716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.599 5.599 10 C 0.130 3.870 11 C 0.068 3.932 12 H 0.060 0.940 13 O -0.565 6.565 14 C 0.140 3.860 15 H 0.102 0.898 16 N -0.707 5.707 17 C 0.544 3.456 18 O -0.535 6.535 19 C -0.070 4.070 20 C -0.066 4.066 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.105 4.105 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.111 4.111 29 C 0.130 3.870 30 H 0.254 0.746 31 H 0.025 0.975 32 H 0.113 0.887 33 H 0.376 0.624 34 H 0.398 0.602 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.030 0.970 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 -19.797 9.361 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.007 3.993 12 H 0.078 0.922 13 O -0.369 6.369 14 C 0.036 3.964 15 H 0.120 0.880 16 N -0.356 5.356 17 C 0.329 3.671 18 O -0.412 6.412 19 C -0.073 4.073 20 C -0.066 4.066 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.134 4.134 25 C -0.123 4.123 26 C -0.162 4.162 27 C -0.177 4.177 28 C -0.148 4.148 29 C 0.003 3.997 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.130 0.870 33 H 0.223 0.777 34 H 0.232 0.768 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.048 0.952 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.757 -20.032 8.168 21.646 hybrid contribution -0.129 1.300 0.730 1.497 sum 0.628 -18.731 8.898 20.747 Atomic orbital electron populations 1.69728 1.04948 1.25095 1.57475 1.24798 0.95766 0.97811 1.02126 0.86101 0.78396 0.82721 0.77974 1.21097 1.21500 1.21083 1.19060 0.90580 0.82146 1.43448 0.90260 1.44268 1.01491 0.99723 1.87209 1.22549 0.85503 0.91981 0.99541 1.23627 0.82711 0.96006 0.96924 0.92208 1.86422 1.15519 1.58775 1.76210 1.22026 0.94128 0.85050 0.95240 0.87997 1.45863 1.60569 1.16697 1.12498 1.19642 0.77141 0.82169 0.88159 1.90688 1.55534 1.79507 1.15426 1.20965 0.93492 0.96325 0.96554 1.19434 0.95073 0.98692 0.93445 1.21095 0.99056 1.00198 0.92944 1.21128 0.94279 0.98446 0.99815 1.21163 0.98490 0.99411 0.94958 1.21134 0.98385 0.99939 0.93961 1.21033 0.93586 0.97546 1.00129 1.23071 0.93041 1.02264 0.97823 1.22878 0.96895 0.99780 0.98156 1.22831 0.94254 0.95978 1.01772 1.21616 0.93700 0.85460 0.98895 0.93535 0.95671 0.86983 0.77681 0.76779 0.85607 0.86005 0.86195 0.86051 0.86095 0.90501 0.88756 0.90982 0.89519 0.89505 0.89689 0.95250 0.94993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.31 10.09 55.49 0.56 -25.75 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.33 3.39 -170.07 -0.58 -15.91 16 10 C 0.13 3.12 5.62 -2.53 -0.01 3.10 16 11 C 0.07 1.30 4.06 -24.58 -0.10 1.20 16 12 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 13 O -0.56 -10.03 13.47 -35.23 -0.47 -10.51 16 14 C 0.14 2.72 3.09 -66.10 -0.20 2.51 16 15 H 0.10 2.21 7.49 -51.93 -0.39 1.82 16 16 N -0.71 -11.26 5.05 -52.04 -0.26 -11.52 16 17 C 0.54 8.61 6.41 -10.99 -0.07 8.54 16 18 O -0.54 -10.37 15.50 5.56 0.09 -10.29 16 19 C -0.07 -0.83 0.95 -156.00 -0.15 -0.98 16 20 C -0.07 -0.73 4.61 -104.62 -0.48 -1.21 16 21 C -0.11 -1.10 9.05 -39.58 -0.36 -1.46 16 22 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 23 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 24 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 25 C -0.10 -1.20 9.46 -39.58 -0.37 -1.57 16 26 C -0.12 -1.24 6.33 -25.77 -0.16 -1.41 16 27 C -0.14 -1.46 7.81 -25.77 -0.20 -1.66 16 28 C -0.11 -1.22 6.91 -25.92 -0.18 -1.39 16 29 C 0.13 2.84 7.00 -3.06 -0.02 2.82 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 2.93 5.87 -51.93 -0.30 2.62 16 33 H 0.38 5.12 9.12 45.56 0.42 5.54 16 34 H 0.40 5.58 8.36 -40.82 -0.34 5.24 16 35 H 0.13 1.01 6.41 -52.49 -0.34 0.67 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.08 0.82 8.09 -51.93 -0.42 0.39 16 41 H 0.09 0.75 6.80 -51.93 -0.35 0.40 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 45 H 0.08 1.07 7.37 -51.93 -0.38 0.69 16 46 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 47 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -32.43 380.15 -10.02 -42.45 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.29 Total: 11.78 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.76 Total: -2.73 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.28 Total: -53.19 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.39 Total: -20.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.43 -10.02 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077341961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.268 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds