Wall clock time and date at job start Tue Mar 31 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99909 * 2 1 4 4 H 1.48497 * 109.47079 * 239.99827 * 3 2 1 5 5 H 1.48503 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47400 * 119.99835 * 3 2 1 7 7 C 1.38809 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00590 * 0.02562 * 7 2 1 10 10 C 1.47432 * 125.64351 * 359.94548 * 9 7 2 11 11 C 1.54907 * 104.83159 * 204.17074 * 10 9 7 12 12 H 1.09000 * 111.00545 * 81.06675 * 11 10 9 13 13 O 1.42903 * 111.00511 * 204.92021 * 11 10 9 14 14 C 1.55156 * 101.58217 * 322.99419 * 11 10 9 15 15 H 1.09007 * 110.87275 * 277.06777 * 14 11 10 16 16 N 1.46504 * 110.72193 * 153.86774 * 14 11 10 17 17 C 1.34772 * 120.00343 * 160.02370 * 16 14 11 18 18 O 1.21289 * 119.99926 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00308 * 179.97438 * 17 16 14 20 20 H 1.08998 * 109.47090 * 300.00069 * 19 17 16 21 21 C 1.50693 * 109.47469 * 180.02562 * 19 17 16 22 22 C 1.38233 * 120.00207 * 119.99588 * 21 19 17 23 23 C 1.38234 * 120.00037 * 179.72405 * 22 21 19 24 24 C 1.38235 * 120.00220 * 0.28719 * 23 22 21 25 25 C 1.38238 * 119.99712 * 359.97124 * 24 23 22 26 26 C 1.38234 * 120.00028 * 359.97438 * 25 24 23 27 27 C 1.52998 * 109.46843 * 59.99802 * 19 17 16 28 28 C 1.53001 * 117.50079 * 248.62422 * 27 19 17 29 29 C 1.52997 * 117.49939 * 179.97438 * 27 19 17 30 30 C 1.47021 * 125.65132 * 180.02562 * 9 7 2 31 31 H 0.96996 * 120.00190 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.36942 * 323.00974 * 10 9 7 33 33 H 1.09004 * 110.35968 * 85.33497 * 10 9 7 34 34 H 0.96692 * 113.99788 * 292.20077 * 13 11 10 35 35 H 0.96997 * 119.99314 * 340.02150 * 16 14 11 36 36 H 1.08002 * 120.00157 * 0.02562 * 22 21 19 37 37 H 1.07999 * 120.00009 * 180.25939 * 23 22 21 38 38 H 1.07996 * 120.00490 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.99691 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.99968 * 179.97438 * 26 25 24 41 41 H 1.09002 * 115.55064 * 34.33186 * 27 19 17 42 42 H 1.09002 * 117.49563 * 359.97438 * 28 27 19 43 43 H 1.08997 * 117.49765 * 145.02743 * 28 27 19 44 44 H 1.09004 * 117.50362 * 214.98452 * 29 27 19 45 45 H 1.09007 * 117.49632 * 0.02562 * 29 27 19 46 46 H 1.08994 * 109.88170 * 59.48078 * 30 9 7 47 47 H 1.09001 * 109.87845 * 298.31420 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1416 -2.5332 0.0011 11 6 -0.4015 -3.9319 0.6140 12 1 -0.3515 -3.8970 1.7023 13 8 -1.6567 -4.4572 0.1776 14 6 0.7784 -4.7524 0.0292 15 1 0.5476 -5.1010 -0.9775 16 7 1.1087 -5.8807 0.9034 17 6 1.8007 -6.9300 0.4170 18 8 2.1495 -6.9404 -0.7446 19 6 2.1410 -8.0903 1.3163 20 1 2.7485 -7.7379 2.1499 21 6 2.9120 -9.1225 0.5347 22 6 4.1894 -9.4752 0.9279 23 6 4.8945 -10.4262 0.2142 24 6 4.3244 -11.0202 -0.8962 25 6 3.0490 -10.6637 -1.2925 26 6 2.3435 -9.7135 -0.5782 27 6 0.8515 -8.7147 1.8532 28 6 0.5576 -8.5552 3.3462 29 6 0.9854 -9.9159 2.7913 30 6 1.9318 -3.7275 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5992 -1.7584 0.6163 33 1 -0.5276 -2.4875 -1.0172 34 1 -2.4238 -3.9767 0.5177 35 1 0.8294 -5.8724 1.8322 36 1 4.6348 -9.0113 1.7956 37 1 5.8909 -10.7048 0.5239 38 1 4.8754 -11.7629 -1.4540 39 1 2.6037 -11.1275 -2.1603 40 1 1.3472 -9.4346 -0.8881 41 1 0.0031 -8.7030 1.1689 42 1 1.2832 -8.0058 3.9461 43 1 -0.4843 -8.4385 3.6444 44 1 0.2250 -10.6940 2.7246 45 1 1.9924 -10.2611 3.0263 46 1 2.5582 -3.8502 0.8851 47 1 2.5283 -3.8651 -0.9003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077385848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:14 Heat of formation + Delta-G solvation = -3.544417 kcal Electronic energy + Delta-G solvation = -28430.521521 eV Core-core repulsion = 24579.796052 eV Total energy + Delta-G solvation = -3850.725469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48215 -38.91666 -37.78859 -37.17892 -35.08493 -33.99390 -32.40499 -31.67649 -30.91282 -28.81464 -27.78279 -26.66002 -24.41239 -22.81779 -22.68669 -21.97296 -21.55364 -20.65052 -20.04837 -19.69395 -17.48925 -17.12504 -16.85259 -16.71092 -15.74010 -15.52550 -15.34747 -15.06609 -14.61765 -14.43050 -14.11860 -13.73153 -13.61349 -13.40279 -13.24108 -12.98049 -12.89869 -12.54045 -12.28809 -11.98173 -11.80530 -11.69127 -11.50373 -11.30314 -11.26016 -11.02642 -10.94636 -10.82708 -10.75627 -10.32626 -10.22130 -9.92851 -9.73887 -9.65484 -9.25822 -8.90203 -8.74763 -8.72421 -8.72239 -6.92840 -5.72961 -3.15352 1.30390 1.41761 2.79843 3.30714 3.38056 3.42132 3.43583 3.49566 3.82727 4.38071 4.41822 4.53745 4.60888 4.64849 4.80141 4.89288 4.95628 5.01850 5.08569 5.14513 5.29822 5.33131 5.41093 5.42586 5.48340 5.60312 5.62577 5.65739 5.66900 5.86210 5.87533 5.90337 5.96776 6.03046 6.09111 6.20236 6.41315 6.48682 6.50378 6.59463 6.68198 6.93797 6.97332 7.30605 7.51545 7.67905 7.76129 8.08334 8.24540 8.44690 9.13175 9.73630 10.36193 11.31256 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.002900 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.665582 B = 9654.385387 C =10444.110097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.010 4.010 3 Si 0.918 3.082 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.068 3.932 12 H 0.061 0.939 13 O -0.566 6.566 14 C 0.143 3.857 15 H 0.098 0.902 16 N -0.711 5.711 17 C 0.520 3.480 18 O -0.529 6.529 19 C -0.038 4.038 20 H 0.102 0.898 21 C -0.057 4.057 22 C -0.114 4.114 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.078 4.078 27 C -0.145 4.145 28 C -0.176 4.176 29 C -0.168 4.168 30 C 0.130 3.870 31 H 0.254 0.746 32 H 0.113 0.887 33 H 0.025 0.975 34 H 0.377 0.623 35 H 0.398 0.602 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.029 0.971 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -21.473 6.926 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.008 3.992 12 H 0.079 0.921 13 O -0.370 6.370 14 C 0.038 3.962 15 H 0.116 0.884 16 N -0.361 5.361 17 C 0.305 3.695 18 O -0.405 6.405 19 C -0.059 4.059 20 H 0.120 0.880 21 C -0.058 4.058 22 C -0.132 4.132 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.141 4.141 26 C -0.096 4.096 27 C -0.164 4.164 28 C -0.213 4.213 29 C -0.205 4.205 30 C 0.003 3.997 31 H 0.065 0.935 32 H 0.130 0.870 33 H 0.043 0.957 34 H 0.224 0.776 35 H 0.232 0.768 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.047 0.953 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.010 -21.664 5.756 22.505 hybrid contribution 0.029 1.332 0.629 1.473 sum 2.039 -20.332 6.385 21.409 Atomic orbital electron populations 1.69723 1.04937 1.25079 1.57604 1.24793 0.95778 0.97808 1.02190 0.86097 0.78390 0.82708 0.77985 1.21097 1.21511 1.21091 1.19067 0.90599 0.82172 1.43292 0.90273 1.44282 1.01478 0.99787 1.87225 1.22547 0.85558 0.91975 0.99531 1.23627 0.82592 0.96050 0.96973 0.92082 1.86410 1.15556 1.58734 1.76341 1.21995 0.94056 0.85172 0.94941 0.88377 1.45947 1.56619 1.19201 1.14370 1.20248 0.77897 0.83046 0.88333 1.90737 1.52355 1.79840 1.17590 1.19913 0.95829 0.92491 0.97662 0.87962 1.19198 0.94122 0.96463 0.95977 1.20979 0.93882 0.98128 1.00192 1.21026 0.99692 0.97454 0.96121 1.21104 0.95595 1.00199 0.97126 1.21107 0.95059 0.98157 0.99802 1.20893 0.99974 0.94796 0.93905 1.22081 0.97783 1.03191 0.93334 1.23123 1.02782 1.00353 0.95057 1.22923 1.02931 0.91410 1.03204 1.21627 0.93753 0.85333 0.98969 0.93550 0.86983 0.95695 0.77626 0.76770 0.86344 0.86291 0.86422 0.86278 0.86395 0.87127 0.88436 0.88339 0.88662 0.88597 0.95273 0.94884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.33 10.09 55.49 0.56 -25.77 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 10 C 0.13 3.08 5.62 -2.53 -0.01 3.07 16 11 C 0.07 1.26 4.04 -24.58 -0.10 1.16 16 12 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 13 O -0.57 -9.55 13.47 -35.23 -0.47 -10.02 16 14 C 0.14 2.71 2.97 -66.09 -0.20 2.51 16 15 H 0.10 2.08 7.69 -51.92 -0.40 1.68 16 16 N -0.71 -10.71 5.03 -52.02 -0.26 -10.97 16 17 C 0.52 7.97 7.00 -10.99 -0.08 7.89 16 18 O -0.53 -10.26 14.82 5.55 0.08 -10.18 16 19 C -0.04 -0.43 2.53 -92.93 -0.23 -0.66 16 20 H 0.10 1.00 7.63 -51.93 -0.40 0.61 16 21 C -0.06 -0.70 4.05 -104.63 -0.42 -1.12 16 22 C -0.11 -1.25 9.67 -39.58 -0.38 -1.63 16 23 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 24 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 25 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 26 C -0.08 -0.99 8.04 -39.58 -0.32 -1.30 16 27 C -0.15 -1.37 4.61 -90.62 -0.42 -1.79 16 28 C -0.18 -1.34 10.18 -26.70 -0.27 -1.61 16 29 C -0.17 -1.32 9.87 -26.71 -0.26 -1.59 16 30 C 0.13 2.87 6.99 -3.06 -0.02 2.85 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.38 4.82 9.12 45.56 0.42 5.23 16 35 H 0.40 4.95 8.41 -40.82 -0.34 4.61 16 36 H 0.12 1.08 7.95 -52.49 -0.42 0.66 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.12 1.54 7.98 -52.49 -0.42 1.12 16 41 H 0.11 1.15 8.11 -51.93 -0.42 0.73 16 42 H 0.10 0.67 8.05 -51.93 -0.42 0.26 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 46 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 47 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -33.02 387.01 -10.49 -43.51 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -6.46 Total: 10.82 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -4.16 Total: -4.10 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.28 Total: -52.71 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.39 Total: -20.20 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.02 -10.49 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077385848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.967 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds