Wall clock time and date at job start Tue Mar 31 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 119.99909 * 2 1 4 4 H 1.48497 * 109.47079 * 239.99827 * 3 2 1 5 5 H 1.48503 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47400 * 119.99835 * 3 2 1 7 7 C 1.38809 * 119.99768 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00590 * 0.02562 * 7 2 1 10 10 C 1.47432 * 125.64351 * 359.94548 * 9 7 2 11 11 C 1.54907 * 104.83159 * 204.17074 * 10 9 7 12 12 H 1.09000 * 111.00545 * 81.06675 * 11 10 9 13 13 O 1.42903 * 111.00511 * 204.92021 * 11 10 9 14 14 C 1.55156 * 101.58217 * 322.99419 * 11 10 9 15 15 H 1.09007 * 110.87275 * 277.06777 * 14 11 10 16 16 N 1.46504 * 110.72193 * 153.86774 * 14 11 10 17 17 C 1.34772 * 120.00343 * 160.02370 * 16 14 11 18 18 O 1.21289 * 119.99926 * 359.97438 * 17 16 14 19 19 C 1.50701 * 120.00308 * 179.97438 * 17 16 14 20 20 H 1.08998 * 109.47090 * 300.00069 * 19 17 16 21 21 C 1.50693 * 109.47469 * 180.02562 * 19 17 16 22 22 C 1.38233 * 120.00207 * 119.99588 * 21 19 17 23 23 C 1.38234 * 120.00037 * 179.72405 * 22 21 19 24 24 C 1.38235 * 120.00220 * 0.28719 * 23 22 21 25 25 C 1.38238 * 119.99712 * 359.97124 * 24 23 22 26 26 C 1.38234 * 120.00028 * 359.97438 * 25 24 23 27 27 C 1.52998 * 109.46843 * 59.99802 * 19 17 16 28 28 C 1.53001 * 117.50079 * 248.62422 * 27 19 17 29 29 C 1.52997 * 117.49939 * 179.97438 * 27 19 17 30 30 C 1.47021 * 125.65132 * 180.02562 * 9 7 2 31 31 H 0.96996 * 120.00190 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.36942 * 323.00974 * 10 9 7 33 33 H 1.09004 * 110.35968 * 85.33497 * 10 9 7 34 34 H 0.96692 * 113.99788 * 292.20077 * 13 11 10 35 35 H 0.96997 * 119.99314 * 340.02150 * 16 14 11 36 36 H 1.08002 * 120.00157 * 0.02562 * 22 21 19 37 37 H 1.07999 * 120.00009 * 180.25939 * 23 22 21 38 38 H 1.07996 * 120.00490 * 179.97438 * 24 23 22 39 39 H 1.08002 * 119.99691 * 179.97438 * 25 24 23 40 40 H 1.07999 * 119.99968 * 179.97438 * 26 25 24 41 41 H 1.09002 * 115.55064 * 34.33186 * 27 19 17 42 42 H 1.09002 * 117.49563 * 359.97438 * 28 27 19 43 43 H 1.08997 * 117.49765 * 145.02743 * 28 27 19 44 44 H 1.09004 * 117.50362 * 214.98452 * 29 27 19 45 45 H 1.09007 * 117.49632 * 0.02562 * 29 27 19 46 46 H 1.08994 * 109.88170 * 59.48078 * 30 9 7 47 47 H 1.09001 * 109.87845 * 298.31420 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1416 -2.5332 0.0011 11 6 -0.4015 -3.9319 0.6140 12 1 -0.3515 -3.8970 1.7023 13 8 -1.6567 -4.4572 0.1776 14 6 0.7784 -4.7524 0.0292 15 1 0.5476 -5.1010 -0.9775 16 7 1.1087 -5.8807 0.9034 17 6 1.8007 -6.9300 0.4170 18 8 2.1495 -6.9404 -0.7446 19 6 2.1410 -8.0903 1.3163 20 1 2.7485 -7.7379 2.1499 21 6 2.9120 -9.1225 0.5347 22 6 4.1894 -9.4752 0.9279 23 6 4.8945 -10.4262 0.2142 24 6 4.3244 -11.0202 -0.8962 25 6 3.0490 -10.6637 -1.2925 26 6 2.3435 -9.7135 -0.5782 27 6 0.8515 -8.7147 1.8532 28 6 0.5576 -8.5552 3.3462 29 6 0.9854 -9.9159 2.7913 30 6 1.9318 -3.7275 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5992 -1.7584 0.6163 33 1 -0.5276 -2.4875 -1.0172 34 1 -2.4238 -3.9767 0.5177 35 1 0.8294 -5.8724 1.8322 36 1 4.6348 -9.0113 1.7956 37 1 5.8909 -10.7048 0.5239 38 1 4.8754 -11.7629 -1.4540 39 1 2.6037 -11.1275 -2.1603 40 1 1.3472 -9.4346 -0.8881 41 1 0.0031 -8.7030 1.1689 42 1 1.2832 -8.0058 3.9461 43 1 -0.4843 -8.4385 3.6444 44 1 0.2250 -10.6940 2.7246 45 1 1.9924 -10.2611 3.0263 46 1 2.5582 -3.8502 0.8851 47 1 2.5283 -3.8651 -0.9003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077385848.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:13 Heat of formation + Delta-G solvation = -25.600570 kcal Electronic energy + Delta-G solvation = -28431.477948 eV Core-core repulsion = 24579.796052 eV Total energy + Delta-G solvation = -3851.681896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58166 -40.14638 -39.11259 -38.01678 -36.70027 -35.55344 -33.66768 -33.16568 -31.73238 -30.42727 -29.21180 -28.15188 -26.27852 -23.63997 -23.37858 -22.86603 -22.66169 -22.29767 -21.59929 -20.76225 -19.13564 -18.54516 -18.13864 -17.77700 -17.27999 -16.64538 -16.44880 -16.20023 -15.88099 -15.69186 -15.45587 -15.13419 -14.84334 -14.72410 -14.40857 -14.21162 -14.04274 -13.79558 -13.70597 -13.42339 -13.21713 -13.12946 -12.84143 -12.70681 -12.57391 -12.29088 -12.11705 -12.06169 -11.93739 -11.80475 -11.55512 -11.44257 -11.06988 -11.01489 -10.78367 -10.63039 -10.16424 -9.73702 -9.58196 -8.99027 -7.83104 -5.29709 0.46329 0.57654 1.46686 1.49999 1.56234 1.58852 2.07663 2.46502 2.82567 2.97155 3.06696 3.28254 3.52643 3.61027 3.77245 3.80544 3.94138 4.00833 4.03700 4.17336 4.19180 4.20870 4.23448 4.33339 4.33669 4.41242 4.56645 4.60210 4.68863 4.81479 4.82532 4.87215 4.93778 5.07018 5.13861 5.19811 5.24881 5.33555 5.35954 5.42289 5.45478 5.60384 5.66248 5.66657 5.74058 6.16290 6.19709 6.53787 6.85770 7.03484 7.23682 7.67415 8.29844 9.18437 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.002900 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.665582 B = 9654.385387 C =10444.110097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.060 4.060 3 Si 0.984 3.016 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.618 5.618 10 C 0.133 3.867 11 C 0.094 3.906 12 H 0.089 0.911 13 O -0.568 6.568 14 C 0.158 3.842 15 H 0.071 0.929 16 N -0.698 5.698 17 C 0.518 3.482 18 O -0.574 6.574 19 C -0.024 4.024 20 H 0.125 0.875 21 C -0.072 4.072 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.127 4.127 25 C -0.137 4.137 26 C -0.100 4.100 27 C -0.160 4.160 28 C -0.162 4.162 29 C -0.160 4.160 30 C 0.132 3.868 31 H 0.251 0.749 32 H 0.092 0.908 33 H -0.011 1.011 34 H 0.397 0.603 35 H 0.415 0.585 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.130 0.870 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.041 0.959 47 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -22.672 9.171 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.811 3.189 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.007 3.993 11 C 0.033 3.967 12 H 0.107 0.893 13 O -0.375 6.375 14 C 0.051 3.949 15 H 0.089 0.911 16 N -0.349 5.349 17 C 0.305 3.695 18 O -0.453 6.453 19 C -0.045 4.045 20 H 0.142 0.858 21 C -0.073 4.073 22 C -0.140 4.140 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.119 4.119 27 C -0.179 4.179 28 C -0.199 4.199 29 C -0.197 4.197 30 C 0.006 3.994 31 H 0.061 0.939 32 H 0.110 0.890 33 H 0.007 0.993 34 H 0.247 0.753 35 H 0.252 0.748 36 H 0.157 0.843 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.059 0.941 47 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 2.925 -22.893 8.044 24.441 hybrid contribution -0.264 1.655 -0.150 1.683 sum 2.661 -21.238 7.894 22.814 Atomic orbital electron populations 1.69947 1.06102 1.25507 1.57931 1.25629 0.96734 1.00908 1.01971 0.85078 0.77170 0.78415 0.78193 1.20920 1.21531 1.19829 1.19411 0.91052 0.83456 1.43704 0.90236 1.44534 1.02418 1.00527 1.87130 1.22381 0.84580 0.94816 0.97486 1.23224 0.83231 0.92421 0.97781 0.89330 1.86386 1.15685 1.58686 1.76746 1.21497 0.93132 0.85585 0.94651 0.91061 1.45734 1.56546 1.17996 1.14669 1.21032 0.76597 0.83572 0.88263 1.90720 1.54011 1.80710 1.19861 1.19857 0.97028 0.90560 0.97065 0.85750 1.19365 0.94920 0.96845 0.96160 1.21286 0.93375 0.98382 1.00991 1.21409 1.00705 0.96775 0.95683 1.21440 0.95198 1.00462 0.97346 1.21349 0.95786 0.98104 1.00208 1.20932 0.99790 0.96084 0.95058 1.21921 0.96430 1.05245 0.94283 1.23242 1.03686 0.99827 0.93136 1.22968 1.03402 0.91468 1.01814 1.21664 0.94730 0.84817 0.98214 0.93920 0.89016 0.99283 0.75262 0.74756 0.84333 0.83718 0.84044 0.85195 0.88083 0.88649 0.87103 0.87532 0.88125 0.88185 0.94122 0.97192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.81 10.09 21.65 0.22 -54.59 16 2 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 3 Si 0.98 45.09 29.55 68.60 2.03 47.12 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.25 -14.01 10.27 84.03 0.86 -13.15 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -32.45 3.39 -691.98 -2.35 -34.80 16 10 C 0.13 6.49 5.62 86.85 0.49 6.98 16 11 C 0.09 3.43 4.04 31.99 0.13 3.56 16 12 H 0.09 2.82 8.00 -2.39 -0.02 2.80 16 13 O -0.57 -18.52 13.47 -148.98 -2.01 -20.53 16 14 C 0.16 6.02 2.97 46.18 0.14 6.15 16 15 H 0.07 3.14 7.69 -2.38 -0.02 3.12 16 16 N -0.70 -20.38 5.03 -436.90 -2.20 -22.57 16 17 C 0.52 15.78 7.00 87.66 0.61 16.39 16 18 O -0.57 -22.95 14.82 -3.06 -0.05 -23.00 16 19 C -0.02 -0.52 2.53 -12.29 -0.03 -0.55 16 20 H 0.12 2.09 7.63 -2.39 -0.02 2.07 16 21 C -0.07 -1.71 4.05 -19.87 -0.08 -1.79 16 22 C -0.12 -2.45 9.67 22.27 0.22 -2.24 16 23 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 24 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 25 C -0.14 -3.05 10.05 22.27 0.22 -2.83 16 26 C -0.10 -2.60 8.04 22.27 0.18 -2.42 16 27 C -0.16 -2.79 4.61 -10.79 -0.05 -2.84 16 28 C -0.16 -1.98 10.18 30.61 0.31 -1.67 16 29 C -0.16 -2.15 9.87 30.61 0.30 -1.85 16 30 C 0.13 5.94 6.99 86.73 0.61 6.55 16 31 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 32 H 0.09 4.86 5.87 -2.39 -0.01 4.85 16 33 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 34 H 0.40 9.49 9.12 -74.06 -0.68 8.81 16 35 H 0.42 9.34 8.41 -92.71 -0.78 8.56 16 36 H 0.14 2.12 7.95 -2.91 -0.02 2.09 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 39 H 0.13 2.45 8.06 -2.91 -0.02 2.42 16 40 H 0.10 2.84 7.98 -2.91 -0.02 2.81 16 41 H 0.10 1.96 8.11 -2.39 -0.02 1.94 16 42 H 0.11 1.09 8.05 -2.39 -0.02 1.07 16 43 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.04 1.73 8.03 -2.39 -0.02 1.71 16 47 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -73.88 387.01 0.00 -73.89 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.47 Total: 31.32 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 4.82 Total: 3.16 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -4.33 Total: -111.96 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -2.05 Total: -43.53 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.88 0.00 -73.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077385848.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.287 kcal (2) G-P(sol) polarization free energy of solvation -73.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds