Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48505 * 109.46634 * 90.00449 * 3 2 1 5 5 H 1.48496 * 109.47033 * 330.00995 * 3 2 1 6 6 H 1.48497 * 109.47255 * 210.00504 * 3 2 1 7 7 C 1.38817 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 150.99752 * 7 2 1 9 9 N 1.36937 * 119.99854 * 331.00102 * 7 2 1 10 10 C 1.47416 * 125.64937 * 347.11233 * 9 7 2 11 11 C 1.54909 * 104.83290 * 204.09148 * 10 9 7 12 12 H 1.09005 * 111.00078 * 81.10744 * 11 10 9 13 13 O 1.42900 * 111.00651 * 204.91248 * 11 10 9 14 14 C 1.55153 * 101.58379 * 322.99178 * 11 10 9 15 15 H 1.08991 * 110.71853 * 276.96001 * 14 11 10 16 16 N 1.46504 * 110.72031 * 153.85920 * 14 11 10 17 17 C 1.34777 * 119.99532 * 155.00243 * 16 14 11 18 18 O 1.21277 * 120.00373 * 355.10908 * 17 16 14 19 19 C 1.50702 * 119.99857 * 175.11142 * 17 16 14 20 20 H 1.08997 * 109.46615 * 333.06275 * 19 17 16 21 21 C 1.50704 * 109.47192 * 93.05742 * 19 17 16 22 22 C 1.38241 * 119.99490 * 59.72694 * 21 19 17 23 23 C 1.38237 * 119.99610 * 179.76610 * 22 21 19 24 24 C 1.38235 * 119.99886 * 0.48406 * 23 22 21 25 25 C 1.38234 * 120.00091 * 359.79674 * 24 23 22 26 26 C 1.38228 * 120.00157 * 359.94703 * 25 24 23 27 27 C 1.52997 * 109.47236 * 213.05872 * 19 17 16 28 28 C 1.53002 * 117.49385 * 132.60336 * 27 19 17 29 29 C 1.53000 * 117.49678 * 63.94528 * 27 19 17 30 30 C 1.47016 * 125.64486 * 166.80512 * 9 7 2 31 31 H 0.96998 * 120.00548 * 176.11975 * 1 2 3 32 32 H 1.09000 * 110.37166 * 322.93412 * 10 9 7 33 33 H 1.08999 * 110.37001 * 85.25488 * 10 9 7 34 34 H 0.96693 * 114.00345 * 298.55397 * 13 11 10 35 35 H 0.96998 * 120.00104 * 335.00513 * 16 14 11 36 36 H 1.07996 * 120.00196 * 359.97438 * 22 21 19 37 37 H 1.07999 * 120.00289 * 180.25587 * 23 22 21 38 38 H 1.08002 * 119.99968 * 179.76804 * 24 23 22 39 39 H 1.08002 * 119.99965 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.00241 * 179.97438 * 26 25 24 41 41 H 1.08991 * 115.55136 * 278.27384 * 27 19 17 42 42 H 1.08996 * 117.50328 * 359.97438 * 28 27 19 43 43 H 1.09001 * 117.49584 * 145.02368 * 28 27 19 44 44 H 1.08999 * 117.49998 * 214.97868 * 29 27 19 45 45 H 1.09001 * 117.49868 * 359.97438 * 29 27 19 46 46 H 1.09000 * 109.88670 * 298.39282 * 30 9 7 47 47 H 1.09008 * 109.88427 * 59.56231 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 1.4002 5 1 1.4476 2.6527 -0.6998 6 1 3.5477 1.4401 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 2.9886 -1.2607 -0.4541 9 7 1.4542 -2.3140 0.5739 10 6 0.2697 -2.3265 1.4513 11 6 0.4167 -3.6156 2.2976 12 1 1.0988 -3.4587 3.1333 13 8 -0.8561 -4.0739 2.7582 14 6 1.0212 -4.6007 1.2625 15 1 0.2376 -5.0419 0.6467 16 7 1.8000 -5.6444 1.9336 17 6 1.9821 -6.8386 1.3359 18 8 1.4287 -7.0811 0.2843 19 6 2.8733 -7.8726 1.9743 20 1 3.6233 -7.3757 2.5895 21 6 2.0428 -8.7883 2.8363 22 6 1.0177 -9.5256 2.2738 23 6 0.2590 -10.3692 3.0636 24 6 0.5191 -10.4679 4.4176 25 6 1.5405 -9.7262 4.9812 26 6 2.3025 -8.8867 4.1905 27 6 3.5683 -8.6903 0.8837 28 6 5.0760 -8.9122 1.0200 29 6 4.5362 -7.9526 -0.0435 30 6 1.9360 -3.6936 0.4125 31 1 -0.4851 -0.8381 -0.0568 32 1 0.2659 -1.4477 2.0962 33 1 -0.6428 -2.3653 0.8564 34 1 -1.3164 -3.4459 3.3315 35 1 2.1844 -5.4761 2.8080 36 1 0.8117 -9.4451 1.2167 37 1 -0.5392 -10.9484 2.6234 38 1 -0.0760 -11.1241 5.0354 39 1 1.7434 -9.8030 6.0392 40 1 3.1002 -8.3069 4.6308 41 1 2.9773 -9.4989 0.4539 42 1 5.5728 -8.4754 1.8863 43 1 5.4769 -9.8668 0.6793 44 1 4.5824 -8.2762 -1.0833 45 1 4.6776 -6.8847 0.1232 46 1 1.8799 -3.9856 -0.6361 47 1 2.9641 -3.7711 0.7666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077385849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -8.762615 kcal Electronic energy + Delta-G solvation = -28530.813041 eV Core-core repulsion = 24679.861294 eV Total energy + Delta-G solvation = -3850.951747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.54249 -39.07508 -38.10527 -36.97268 -35.29865 -34.18560 -32.76111 -31.70506 -31.06695 -28.64784 -27.90851 -26.88556 -24.29018 -22.94948 -22.57978 -22.01637 -21.76516 -20.75388 -20.18454 -19.66256 -17.73232 -17.31142 -17.18623 -16.88449 -15.95758 -15.79637 -15.17097 -14.91408 -14.57275 -14.54294 -14.12645 -13.97514 -13.68691 -13.59096 -13.39595 -13.16271 -12.91317 -12.75609 -12.52771 -12.21065 -11.85535 -11.68883 -11.61615 -11.54579 -11.32799 -11.14533 -10.79892 -10.56413 -10.54926 -10.43035 -10.14007 -10.08142 -9.93652 -9.66200 -9.47152 -9.08332 -8.90279 -8.77745 -8.44619 -7.04892 -6.18707 -3.19251 1.12141 1.23898 2.74018 3.13163 3.48143 3.49615 3.61319 3.66998 3.76291 4.30888 4.35356 4.54486 4.57590 4.67705 4.76790 4.82434 4.90638 4.99427 5.00278 5.06446 5.11052 5.26115 5.29493 5.34442 5.42361 5.48497 5.50217 5.53699 5.56038 5.77726 5.81548 5.88413 5.92591 5.94907 5.97731 6.06700 6.26967 6.34813 6.38009 6.41369 6.54497 6.69697 6.81309 6.81870 6.85348 7.63081 7.68017 7.90157 8.35381 8.40946 8.93213 9.74162 10.25004 11.16280 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.003069 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.540271 B = 9122.202238 C =10167.534541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.025 4.025 3 Si 1.070 2.930 4 H -0.293 1.293 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.341 4.341 8 H 0.070 0.930 9 N -0.598 5.598 10 C 0.119 3.881 11 C 0.077 3.923 12 H 0.066 0.934 13 O -0.562 6.562 14 C 0.143 3.857 15 H 0.103 0.897 16 N -0.714 5.714 17 C 0.526 3.474 18 O -0.530 6.530 19 C -0.034 4.034 20 H 0.095 0.905 21 C -0.071 4.071 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.111 4.111 27 C -0.129 4.129 28 C -0.176 4.176 29 C -0.170 4.170 30 C 0.131 3.869 31 H 0.270 0.730 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.378 0.622 35 H 0.397 0.603 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.034 0.966 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.703 -20.081 10.748 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.227 4.227 3 Si 0.900 3.100 4 H -0.221 1.221 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.468 4.468 8 H 0.088 0.912 9 N -0.327 5.327 10 C -0.007 4.007 11 C 0.017 3.983 12 H 0.083 0.917 13 O -0.366 6.366 14 C 0.038 3.962 15 H 0.121 0.879 16 N -0.364 5.364 17 C 0.311 3.689 18 O -0.405 6.405 19 C -0.056 4.056 20 H 0.113 0.887 21 C -0.072 4.072 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.139 4.139 26 C -0.129 4.129 27 C -0.147 4.147 28 C -0.213 4.213 29 C -0.207 4.207 30 C 0.004 3.996 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.225 0.775 35 H 0.231 0.769 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.052 0.948 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.355 -19.035 9.592 21.977 hybrid contribution 0.208 -1.031 0.660 1.242 sum 5.563 -20.065 10.252 23.209 Atomic orbital electron populations 1.70777 1.06614 1.30273 1.48121 1.25785 0.96424 1.01066 0.99425 0.83428 0.74501 0.75588 0.76489 1.22053 1.21567 1.21821 1.19806 1.00697 0.87733 1.38576 0.91179 1.44394 1.32439 1.01355 1.54535 1.22173 0.91704 0.94377 0.92471 1.23363 0.84689 0.94959 0.95320 0.91665 1.86465 1.32867 1.46960 1.70353 1.21968 0.93654 0.86907 0.93698 0.87895 1.45947 1.54894 1.13642 1.21947 1.20261 0.81473 0.82094 0.85025 1.90689 1.48272 1.78754 1.22793 1.19852 0.96116 0.93725 0.95904 0.88651 1.19363 0.96655 0.97675 0.93482 1.21173 0.94616 0.95490 1.00716 1.21161 0.99593 0.98915 0.94010 1.21172 0.97892 0.99607 0.95196 1.21093 0.96082 0.97036 0.99701 1.21029 0.99893 0.99153 0.92813 1.21934 0.91613 1.01937 0.99238 1.23065 0.95319 1.01359 1.01588 1.22950 1.03044 0.98363 0.96371 1.21657 0.95634 0.85251 0.97058 0.91858 0.92274 0.94454 0.77517 0.76888 0.85350 0.86003 0.86170 0.86011 0.85966 0.87042 0.88750 0.88640 0.88458 0.88722 0.94830 0.94995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 12.88 55.49 0.71 -26.80 16 2 C -0.03 -0.72 5.06 -17.43 -0.09 -0.81 16 3 Si 1.07 25.16 30.01 -169.99 -5.10 20.06 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.34 -9.60 10.03 -15.06 -0.15 -9.75 16 8 H 0.07 1.98 7.98 -52.49 -0.42 1.56 16 9 N -0.60 -15.17 3.33 -170.07 -0.57 -15.74 16 10 C 0.12 2.73 4.96 -2.53 -0.01 2.71 16 11 C 0.08 1.39 4.06 -24.58 -0.10 1.29 16 12 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 13 O -0.56 -9.37 13.47 -35.23 -0.47 -9.84 16 14 C 0.14 2.67 3.08 -66.09 -0.20 2.47 16 15 H 0.10 2.19 7.49 -51.93 -0.39 1.80 16 16 N -0.71 -10.74 5.11 -52.02 -0.27 -11.01 16 17 C 0.53 7.98 6.23 -10.98 -0.07 7.92 16 18 O -0.53 -9.96 15.60 5.56 0.09 -9.87 16 19 C -0.03 -0.39 2.48 -92.92 -0.23 -0.62 16 20 H 0.10 0.89 7.67 -51.93 -0.40 0.50 16 21 C -0.07 -0.80 4.77 -104.62 -0.50 -1.30 16 22 C -0.10 -1.21 8.65 -39.58 -0.34 -1.55 16 23 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 26 C -0.11 -1.06 9.67 -39.59 -0.38 -1.44 16 27 C -0.13 -1.43 4.46 -90.62 -0.40 -1.83 16 28 C -0.18 -1.58 10.18 -26.69 -0.27 -1.86 16 29 C -0.17 -1.89 9.98 -26.69 -0.27 -2.15 16 30 C 0.13 2.84 7.00 -3.06 -0.02 2.82 16 31 H 0.27 8.14 5.87 -40.82 -0.24 7.90 16 32 H 0.06 1.43 7.75 -51.93 -0.40 1.03 16 33 H 0.04 0.93 6.86 -51.93 -0.36 0.58 16 34 H 0.38 4.72 9.11 45.56 0.42 5.13 16 35 H 0.40 4.89 8.57 -40.82 -0.35 4.54 16 36 H 0.13 1.65 7.41 -52.49 -0.39 1.27 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.91 7.95 -52.49 -0.42 0.49 16 41 H 0.11 1.29 7.43 -51.93 -0.39 0.90 16 42 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 43 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.67 8.03 -51.92 -0.42 0.25 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -34.25 387.39 -10.34 -44.59 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -6.34 Total: 11.50 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -4.24 Total: -8.72 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.12 Total: -53.55 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.39 Total: -19.72 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -5.10 Total: 20.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.25 -10.34 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077385849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.829 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds