Wall clock time and date at job start Tue Mar 31 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48505 * 109.46634 * 90.00449 * 3 2 1 5 5 H 1.48496 * 109.47033 * 330.00995 * 3 2 1 6 6 H 1.48497 * 109.47255 * 210.00504 * 3 2 1 7 7 C 1.38817 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99816 * 150.99752 * 7 2 1 9 9 N 1.36937 * 119.99854 * 331.00102 * 7 2 1 10 10 C 1.47416 * 125.64937 * 347.11233 * 9 7 2 11 11 C 1.54909 * 104.83290 * 204.09148 * 10 9 7 12 12 H 1.09005 * 111.00078 * 81.10744 * 11 10 9 13 13 O 1.42900 * 111.00651 * 204.91248 * 11 10 9 14 14 C 1.55153 * 101.58379 * 322.99178 * 11 10 9 15 15 H 1.08991 * 110.71853 * 276.96001 * 14 11 10 16 16 N 1.46504 * 110.72031 * 153.85920 * 14 11 10 17 17 C 1.34777 * 119.99532 * 155.00243 * 16 14 11 18 18 O 1.21277 * 120.00373 * 355.10908 * 17 16 14 19 19 C 1.50702 * 119.99857 * 175.11142 * 17 16 14 20 20 H 1.08997 * 109.46615 * 333.06275 * 19 17 16 21 21 C 1.50704 * 109.47192 * 93.05742 * 19 17 16 22 22 C 1.38241 * 119.99490 * 59.72694 * 21 19 17 23 23 C 1.38237 * 119.99610 * 179.76610 * 22 21 19 24 24 C 1.38235 * 119.99886 * 0.48406 * 23 22 21 25 25 C 1.38234 * 120.00091 * 359.79674 * 24 23 22 26 26 C 1.38228 * 120.00157 * 359.94703 * 25 24 23 27 27 C 1.52997 * 109.47236 * 213.05872 * 19 17 16 28 28 C 1.53002 * 117.49385 * 132.60336 * 27 19 17 29 29 C 1.53000 * 117.49678 * 63.94528 * 27 19 17 30 30 C 1.47016 * 125.64486 * 166.80512 * 9 7 2 31 31 H 0.96998 * 120.00548 * 176.11975 * 1 2 3 32 32 H 1.09000 * 110.37166 * 322.93412 * 10 9 7 33 33 H 1.08999 * 110.37001 * 85.25488 * 10 9 7 34 34 H 0.96693 * 114.00345 * 298.55397 * 13 11 10 35 35 H 0.96998 * 120.00104 * 335.00513 * 16 14 11 36 36 H 1.07996 * 120.00196 * 359.97438 * 22 21 19 37 37 H 1.07999 * 120.00289 * 180.25587 * 23 22 21 38 38 H 1.08002 * 119.99968 * 179.76804 * 24 23 22 39 39 H 1.08002 * 119.99965 * 179.97438 * 25 24 23 40 40 H 1.08001 * 120.00241 * 179.97438 * 26 25 24 41 41 H 1.08991 * 115.55136 * 278.27384 * 27 19 17 42 42 H 1.08996 * 117.50328 * 359.97438 * 28 27 19 43 43 H 1.09001 * 117.49584 * 145.02368 * 28 27 19 44 44 H 1.08999 * 117.49998 * 214.97868 * 29 27 19 45 45 H 1.09001 * 117.49868 * 359.97438 * 29 27 19 46 46 H 1.09000 * 109.88670 * 298.39282 * 30 9 7 47 47 H 1.09008 * 109.88427 * 59.56231 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 1.4002 5 1 1.4476 2.6527 -0.6998 6 1 3.5477 1.4401 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 2.9886 -1.2607 -0.4541 9 7 1.4542 -2.3140 0.5739 10 6 0.2697 -2.3265 1.4513 11 6 0.4167 -3.6156 2.2976 12 1 1.0988 -3.4587 3.1333 13 8 -0.8561 -4.0739 2.7582 14 6 1.0212 -4.6007 1.2625 15 1 0.2376 -5.0419 0.6467 16 7 1.8000 -5.6444 1.9336 17 6 1.9821 -6.8386 1.3359 18 8 1.4287 -7.0811 0.2843 19 6 2.8733 -7.8726 1.9743 20 1 3.6233 -7.3757 2.5895 21 6 2.0428 -8.7883 2.8363 22 6 1.0177 -9.5256 2.2738 23 6 0.2590 -10.3692 3.0636 24 6 0.5191 -10.4679 4.4176 25 6 1.5405 -9.7262 4.9812 26 6 2.3025 -8.8867 4.1905 27 6 3.5683 -8.6903 0.8837 28 6 5.0760 -8.9122 1.0200 29 6 4.5362 -7.9526 -0.0435 30 6 1.9360 -3.6936 0.4125 31 1 -0.4851 -0.8381 -0.0568 32 1 0.2659 -1.4477 2.0962 33 1 -0.6428 -2.3653 0.8564 34 1 -1.3164 -3.4459 3.3315 35 1 2.1844 -5.4761 2.8080 36 1 0.8117 -9.4451 1.2167 37 1 -0.5392 -10.9484 2.6234 38 1 -0.0760 -11.1241 5.0354 39 1 1.7434 -9.8030 6.0392 40 1 3.1002 -8.3069 4.6308 41 1 2.9773 -9.4989 0.4539 42 1 5.5728 -8.4754 1.8863 43 1 5.4769 -9.8668 0.6793 44 1 4.5824 -8.2762 -1.0833 45 1 4.6776 -6.8847 0.1232 46 1 1.8799 -3.9856 -0.6361 47 1 2.9641 -3.7711 0.7666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077385849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:16 Heat of formation + Delta-G solvation = -32.260201 kcal Electronic energy + Delta-G solvation = -28531.831973 eV Core-core repulsion = 24679.861294 eV Total energy + Delta-G solvation = -3851.970679 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64748 -40.28223 -39.35415 -37.93661 -36.92092 -35.73347 -33.93608 -33.27245 -31.79187 -30.28284 -29.35502 -28.24129 -26.21230 -23.69979 -23.49201 -22.93958 -22.76173 -22.46372 -21.77726 -20.71768 -19.72262 -18.61568 -18.17901 -18.03028 -17.37550 -16.65647 -16.34118 -16.09093 -15.87705 -15.73646 -15.54305 -15.38620 -15.33980 -14.86037 -14.54215 -14.32365 -14.15966 -14.01950 -13.70835 -13.54472 -13.37449 -13.21909 -12.68400 -12.59371 -12.51246 -12.43262 -12.10882 -11.90916 -11.89470 -11.81052 -11.74126 -11.53827 -11.26087 -11.17643 -10.73146 -10.58677 -10.22415 -9.81920 -9.63417 -9.15189 -8.42845 -5.40518 0.36194 0.50016 1.53879 1.58176 1.65479 1.83748 1.93877 2.58114 2.81470 2.87996 2.92366 3.13996 3.42581 3.50175 3.61525 3.71832 3.78619 3.88656 3.92735 4.02719 4.08187 4.12407 4.20731 4.23927 4.26142 4.33397 4.37561 4.49169 4.63493 4.68574 4.73981 4.77119 4.81863 4.86995 4.98971 4.99233 5.08410 5.15817 5.18676 5.23396 5.34698 5.55964 5.56821 5.62625 5.64530 6.10040 6.21296 6.45528 6.69838 6.77429 7.16721 7.60818 8.14179 8.91505 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.003069 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.540271 B = 9122.202238 C =10167.534541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.075 4.075 3 Si 1.124 2.876 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.065 0.935 9 N -0.618 5.618 10 C 0.123 3.877 11 C 0.103 3.897 12 H 0.098 0.902 13 O -0.565 6.565 14 C 0.157 3.843 15 H 0.072 0.928 16 N -0.702 5.702 17 C 0.523 3.477 18 O -0.573 6.573 19 C -0.021 4.021 20 H 0.125 0.875 21 C -0.084 4.084 22 C -0.126 4.126 23 C -0.132 4.132 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.144 4.144 28 C -0.145 4.145 29 C -0.190 4.190 30 C 0.133 3.867 31 H 0.255 0.745 32 H 0.043 0.957 33 H 0.007 0.993 34 H 0.398 0.602 35 H 0.415 0.585 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.097 0.903 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.006 0.994 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.726 -20.926 14.103 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.271 4.271 3 Si 0.948 3.052 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.003 4.003 11 C 0.043 3.957 12 H 0.115 0.885 13 O -0.373 6.373 14 C 0.051 3.949 15 H 0.091 0.909 16 N -0.354 5.354 17 C 0.311 3.689 18 O -0.451 6.451 19 C -0.042 4.042 20 H 0.143 0.857 21 C -0.085 4.085 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.162 4.162 28 C -0.181 4.181 29 C -0.227 4.227 30 C 0.007 3.993 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.249 0.751 35 H 0.253 0.747 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.168 0.832 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.128 0.872 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.024 0.976 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.393 -19.915 12.994 24.902 hybrid contribution -0.488 -0.868 -0.434 1.086 sum 6.905 -20.783 12.560 25.246 Atomic orbital electron populations 1.70902 1.07614 1.29422 1.50626 1.27274 0.96452 1.04546 0.98841 0.82734 0.73852 0.71325 0.77330 1.20358 1.22135 1.19772 1.20082 1.00555 0.89023 1.38488 0.91691 1.44644 1.32948 1.02140 1.54896 1.22102 0.89654 0.96428 0.92129 1.23046 0.85933 0.91583 0.95156 0.88468 1.86438 1.32475 1.47568 1.70836 1.21454 0.92688 0.87237 0.93567 0.90945 1.45767 1.54407 1.12758 1.22494 1.21076 0.81058 0.82385 0.84408 1.90674 1.49980 1.79517 1.24934 1.19813 0.95765 0.92629 0.96032 0.85738 1.19384 0.96742 0.97956 0.94379 1.21147 0.96174 0.97202 0.99916 1.21355 0.99831 0.98928 0.94857 1.21514 0.98132 0.99678 0.94709 1.21498 0.95276 0.96037 1.01108 1.21347 1.00443 0.99187 0.91811 1.21929 0.92909 1.01809 0.99578 1.23170 0.93116 1.01101 1.00759 1.22949 1.04600 0.98275 0.96882 1.21693 0.96991 0.84334 0.96313 0.93446 0.93887 0.97508 0.75109 0.74723 0.87869 0.85192 0.83823 0.83151 0.83223 0.88449 0.86731 0.87235 0.89006 0.89770 0.97608 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.10 12.88 21.65 0.28 -57.82 16 2 C -0.08 -4.32 5.06 84.86 0.43 -3.89 16 3 Si 1.12 50.65 30.01 68.60 2.06 52.71 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.35 -20.26 10.03 84.03 0.84 -19.42 16 8 H 0.07 3.71 7.98 -2.91 -0.02 3.68 16 9 N -0.62 -32.05 3.33 -691.98 -2.30 -34.35 16 10 C 0.12 5.77 4.96 86.86 0.43 6.20 16 11 C 0.10 3.63 4.06 31.98 0.13 3.76 16 12 H 0.10 2.88 8.01 -2.38 -0.02 2.86 16 13 O -0.57 -18.09 13.47 -148.98 -2.01 -20.10 16 14 C 0.16 5.92 3.08 46.18 0.14 6.06 16 15 H 0.07 3.22 7.49 -2.39 -0.02 3.20 16 16 N -0.70 -20.35 5.11 -436.90 -2.23 -22.59 16 17 C 0.52 15.84 6.23 87.66 0.55 16.38 16 18 O -0.57 -22.61 15.60 -3.02 -0.05 -22.66 16 19 C -0.02 -0.45 2.48 -12.29 -0.03 -0.48 16 20 H 0.12 1.89 7.67 -2.39 -0.02 1.87 16 21 C -0.08 -1.75 4.77 -19.86 -0.09 -1.84 16 22 C -0.13 -3.03 8.65 22.27 0.19 -2.83 16 23 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 24 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 25 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 26 C -0.11 -1.71 9.67 22.27 0.22 -1.50 16 27 C -0.14 -3.10 4.46 -10.79 -0.05 -3.15 16 28 C -0.14 -2.25 10.18 30.62 0.31 -1.94 16 29 C -0.19 -4.16 9.98 30.62 0.31 -3.86 16 30 C 0.13 5.91 7.00 86.74 0.61 6.52 16 31 H 0.25 16.09 5.87 -92.71 -0.54 15.54 16 32 H 0.04 2.12 7.75 -2.39 -0.02 2.10 16 33 H 0.01 0.38 6.86 -2.39 -0.02 0.36 16 34 H 0.40 9.20 9.11 -74.06 -0.67 8.52 16 35 H 0.42 9.00 8.57 -92.71 -0.79 8.21 16 36 H 0.10 2.91 7.41 -2.91 -0.02 2.89 16 37 H 0.13 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.15 1.46 7.95 -2.91 -0.02 1.43 16 41 H 0.10 2.35 7.43 -2.39 -0.02 2.34 16 42 H 0.11 1.36 8.07 -2.39 -0.02 1.34 16 43 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.05 1.96 8.03 -2.38 -0.02 1.94 16 Total: -1.00 -78.07 387.39 0.15 -77.92 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.25 Total: 32.45 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 4.65 Total: -5.57 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -4.25 Total: -114.75 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.05 Total: -42.76 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 2.06 Total: 52.71 kcal Total: -78.07 0.15 -77.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077385849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.659 kcal (2) G-P(sol) polarization free energy of solvation -78.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds