Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50692 * 115.55972 * 2 1 4 4 C 1.38242 * 119.99921 * 90.85598 * 3 2 1 5 5 C 1.38233 * 119.99934 * 179.74481 * 4 3 2 6 6 C 1.38232 * 119.99989 * 0.51823 * 5 4 3 7 7 C 1.38240 * 120.00132 * 359.75273 * 6 5 4 8 8 C 1.38232 * 120.00153 * 271.11903 * 3 2 1 9 9 C 1.53000 * 117.49708 * 214.30929 * 2 1 3 10 10 C 1.53001 * 60.00041 * 252.51424 * 9 2 1 11 11 H 1.09003 * 117.49797 * 107.51476 * 10 9 2 12 12 C 1.50698 * 117.49721 * 252.51407 * 10 9 2 13 13 O 1.21286 * 120.00145 * 22.99553 * 12 10 9 14 14 N 1.34776 * 120.00067 * 203.00559 * 12 10 9 15 15 C 1.46497 * 120.00391 * 180.02562 * 14 12 10 16 16 H 1.09006 * 110.63962 * 31.85078 * 15 14 12 17 17 C 1.54334 * 110.99935 * 268.77689 * 15 14 12 18 18 N 1.47026 * 107.26452 * 219.60173 * 17 15 14 19 19 C 1.36931 * 125.64803 * 178.85312 * 18 17 15 20 20 H 1.08000 * 119.99829 * 334.53491 * 19 18 17 21 21 C 1.38816 * 120.00242 * 154.54065 * 19 18 17 22 22 N 1.31610 * 120.00068 * 330.36382 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 150.08191 * 21 19 18 24 24 H 1.48496 * 109.47167 * 180.28074 * 23 21 19 25 25 H 1.48503 * 109.47147 * 300.28086 * 23 21 19 26 26 H 1.48499 * 109.46875 * 60.27579 * 23 21 19 27 27 C 1.47425 * 108.69984 * 358.57762 * 18 17 15 28 28 C 1.54910 * 104.83293 * 24.36367 * 27 18 17 29 29 H 1.09002 * 111.00681 * 81.09594 * 28 27 18 30 30 O 1.42902 * 111.00297 * 204.91069 * 28 27 18 31 31 H 1.09002 * 109.47168 * 274.30787 * 1 2 3 32 32 H 1.09001 * 109.47308 * 34.30789 * 1 2 3 33 33 H 1.09004 * 109.46984 * 154.31053 * 1 2 3 34 34 H 1.08003 * 119.99975 * 359.97438 * 4 3 2 35 35 H 1.08003 * 120.00200 * 180.29122 * 5 4 3 36 36 H 1.08004 * 120.00464 * 179.77148 * 6 5 4 37 37 H 1.07998 * 120.00318 * 179.97438 * 7 6 5 38 38 H 1.08001 * 120.00089 * 0.02562 * 8 3 2 39 39 H 1.09000 * 117.49811 * 145.01741 * 9 2 1 40 40 H 1.09004 * 117.49936 * 0.02562 * 9 2 1 41 41 H 0.97001 * 119.99734 * 359.97438 * 14 12 10 42 42 H 1.08994 * 109.99596 * 100.12283 * 17 15 14 43 43 H 1.09005 * 109.77724 * 338.95432 * 17 15 14 44 44 H 0.97008 * 119.99975 * 357.39335 * 22 21 19 45 45 H 1.09007 * 110.36142 * 143.20097 * 27 18 17 46 46 H 1.08994 * 110.36877 * 265.40631 * 27 18 17 47 47 H 0.96695 * 114.00237 * 298.55088 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1802 1.3594 0.0000 4 6 2.4946 1.9753 1.1971 5 6 3.0958 3.2200 1.1970 6 6 3.3729 3.8537 0.0001 7 6 3.0535 3.2403 -1.1969 8 6 2.4573 1.9931 -1.1969 9 6 2.2365 -1.1210 -0.7650 10 6 2.2364 -1.1210 0.7650 11 1 1.6114 -1.8588 1.2683 12 6 3.5292 -0.7812 1.4608 13 8 4.3769 -0.1340 0.8832 14 7 3.7435 -1.1965 2.7250 15 6 5.0000 -0.8656 3.4017 16 1 5.3795 0.0969 3.0584 17 6 6.0539 -1.9717 3.1829 18 7 6.7755 -2.1441 4.4522 19 6 7.7782 -3.0474 4.6839 20 1 7.8351 -3.9530 4.0982 21 6 8.7216 -2.7991 5.6715 22 7 9.0450 -1.5603 5.9761 23 14 9.5263 -4.2232 6.5736 24 1 10.4850 -3.6951 7.5772 25 1 8.4833 -5.0268 7.2604 26 1 10.2502 -5.0799 5.6003 27 6 6.2453 -1.1788 5.4322 28 6 4.8102 -0.8633 4.9415 29 1 4.1117 -1.6408 5.2508 30 8 4.3816 0.4196 5.4029 31 1 -0.3633 0.0772 1.0248 32 1 -0.3634 0.8489 -0.5792 33 1 -0.3633 -0.9261 -0.4455 34 1 2.2738 1.4822 2.1323 35 1 3.3457 3.6991 2.1322 36 1 3.8393 4.8278 0.0001 37 1 3.2696 3.7355 -2.1320 38 1 2.2075 1.5140 -2.1320 39 1 3.1715 -0.8752 -1.2683 40 1 1.6112 -1.8583 -1.2686 41 1 3.0655 -1.7138 3.1870 42 1 6.7496 -1.6737 2.3985 43 1 5.5592 -2.9034 2.9082 44 1 8.6524 -0.8217 5.4848 45 1 6.2168 -1.6247 6.4265 46 1 6.8528 -0.2739 5.4404 47 1 4.3430 0.4985 6.3658 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077420288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = -8.590564 kcal Electronic energy + Delta-G solvation = -28743.428783 eV Core-core repulsion = 24892.484496 eV Total energy + Delta-G solvation = -3850.944286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.62008 -39.07305 -38.04667 -36.70397 -35.27183 -34.08733 -31.83837 -30.82682 -30.72077 -28.96728 -28.28135 -27.36347 -24.68833 -23.63302 -23.17074 -22.29961 -20.82598 -20.48482 -20.05711 -19.42030 -17.74785 -17.40375 -17.02514 -16.41794 -15.81374 -15.27363 -14.94875 -14.74144 -14.34843 -14.26390 -14.07322 -13.93104 -13.58093 -13.51852 -13.32630 -13.18525 -12.93405 -12.69287 -12.53222 -12.29099 -12.24222 -11.97575 -11.68972 -11.46725 -11.13711 -11.06737 -10.76933 -10.66043 -10.53527 -10.16601 -10.13769 -10.06554 -9.94575 -9.63480 -9.43727 -8.88220 -8.78966 -8.59277 -8.37826 -6.96034 -6.20216 -3.27939 1.41097 1.49726 2.54833 3.23284 3.46451 3.49210 3.67917 3.68433 3.84644 4.31432 4.39438 4.52178 4.56922 4.61565 4.81059 4.98481 5.00159 5.05444 5.08153 5.16210 5.29111 5.39024 5.42814 5.43229 5.45948 5.52958 5.56389 5.57056 5.67196 5.68962 5.81270 5.93620 5.96710 5.98447 6.07076 6.08717 6.43661 6.52087 6.58284 6.58380 6.64291 6.69423 6.84215 6.88879 7.06436 7.70256 7.78189 7.89520 8.43397 8.45948 8.93282 9.73408 10.29577 11.12620 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018485 B = 0.002972 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.363584 B = 9419.724396 C = 9873.145514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.060 4.060 3 C -0.039 4.039 4 C -0.092 4.092 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.123 4.123 8 C -0.107 4.107 9 C -0.132 4.132 10 C -0.181 4.181 11 H 0.121 0.879 12 C 0.540 3.460 13 O -0.525 6.525 14 N -0.714 5.714 15 C 0.146 3.854 16 H 0.101 0.899 17 C 0.126 3.874 18 N -0.594 5.594 19 C -0.346 4.346 20 H 0.063 0.937 21 C -0.021 4.021 22 N -0.905 5.905 23 Si 1.069 2.931 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.291 1.291 27 C 0.117 3.883 28 C 0.078 3.922 29 H 0.065 0.935 30 O -0.562 6.562 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.396 0.604 42 H 0.034 0.966 43 H 0.031 0.969 44 H 0.269 0.731 45 H 0.052 0.948 46 H 0.039 0.961 47 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.016 5.210 -10.160 23.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.061 4.061 3 C -0.039 4.039 4 C -0.110 4.110 5 C -0.132 4.132 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.125 4.125 9 C -0.170 4.170 10 C -0.202 4.202 11 H 0.139 0.861 12 C 0.326 3.674 13 O -0.401 6.401 14 N -0.364 5.364 15 C 0.041 3.959 16 H 0.119 0.881 17 C 0.000 4.000 18 N -0.323 5.323 19 C -0.474 4.474 20 H 0.081 0.919 21 C -0.225 4.225 22 N -0.544 5.544 23 Si 0.898 3.102 24 H -0.210 1.210 25 H -0.220 1.220 26 H -0.218 1.218 27 C -0.009 4.009 28 C 0.018 3.982 29 H 0.083 0.917 30 O -0.367 6.367 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.230 0.770 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -18.257 5.344 -10.012 21.497 hybrid contribution -1.184 -0.144 -0.283 1.225 sum -19.441 5.200 -10.295 22.605 Atomic orbital electron populations 1.21365 0.90542 1.02437 1.02464 1.20163 0.94373 0.88057 1.03472 1.18793 0.98455 0.93243 0.93445 1.20861 0.97961 0.95008 0.97209 1.21076 0.98651 0.95383 0.98095 1.21097 1.00276 0.99973 0.92683 1.21035 0.99607 0.95571 0.97870 1.20819 0.99356 0.95175 0.97151 1.23213 1.03023 0.99498 0.91245 1.22444 0.98020 1.03556 0.96170 0.86150 1.19468 0.87271 0.79143 0.81516 1.90741 1.45675 1.38664 1.65007 1.45849 1.19585 1.56559 1.14444 1.21922 0.83917 1.00143 0.89913 0.88094 1.21742 0.92674 0.94633 0.90944 1.44322 1.40796 1.42156 1.04983 1.19656 1.06285 0.98258 1.23195 0.91936 1.25955 0.95078 1.01661 0.99764 1.70797 1.38918 0.99208 1.45439 0.83458 0.75859 0.74399 0.76450 1.21023 1.21978 1.21795 1.22166 0.90011 0.94477 0.94275 1.23346 0.96637 0.84442 0.93811 0.91680 1.86459 1.89975 1.33458 1.26812 0.91773 0.91496 0.91792 0.86846 0.86277 0.86434 0.86380 0.86431 0.87373 0.87651 0.76970 0.94829 0.95118 0.91955 0.92940 0.94337 0.77591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.84 37.16 0.37 -0.48 16 2 C -0.06 -0.62 2.17 -155.66 -0.34 -0.96 16 3 C -0.04 -0.50 3.79 -104.63 -0.40 -0.90 16 4 C -0.09 -1.29 7.72 -39.58 -0.31 -1.59 16 5 C -0.11 -1.54 10.05 -39.59 -0.40 -1.94 16 6 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 7 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 8 C -0.11 -1.28 9.58 -39.58 -0.38 -1.66 16 9 C -0.13 -1.36 9.25 -26.73 -0.25 -1.61 16 10 C -0.18 -2.03 5.89 -91.77 -0.54 -2.57 16 11 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 12 C 0.54 8.32 5.92 -10.99 -0.07 8.26 16 13 O -0.53 -10.15 14.12 5.55 0.08 -10.07 16 14 N -0.71 -10.75 5.12 -52.03 -0.27 -11.02 16 15 C 0.15 2.75 3.04 -66.09 -0.20 2.55 16 16 H 0.10 2.18 7.55 -51.93 -0.39 1.78 16 17 C 0.13 2.83 7.01 -3.06 -0.02 2.81 16 18 N -0.59 -15.23 3.19 -170.06 -0.54 -15.77 16 19 C -0.35 -9.86 9.95 -15.06 -0.15 -10.01 16 20 H 0.06 1.79 7.99 -52.49 -0.42 1.37 16 21 C -0.02 -0.60 5.10 -17.43 -0.09 -0.69 16 22 N -0.90 -27.35 13.13 55.49 0.73 -26.63 16 23 Si 1.07 25.15 30.01 -169.99 -5.10 20.04 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.12 2.67 5.37 -2.53 -0.01 2.65 16 28 C 0.08 1.39 4.06 -24.58 -0.10 1.29 16 29 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 30 O -0.56 -9.07 13.47 -35.23 -0.47 -9.54 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 34 H 0.11 1.61 7.61 -52.48 -0.40 1.21 16 35 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.11 1.33 7.86 -51.93 -0.41 0.93 16 40 H 0.11 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.40 4.81 8.56 -40.82 -0.35 4.46 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 44 H 0.27 8.28 6.39 -40.82 -0.26 8.02 16 45 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 46 H 0.04 0.97 6.83 -51.93 -0.35 0.61 16 47 H 0.38 4.50 9.11 45.56 0.42 4.92 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -34.90 385.96 -9.86 -44.77 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.43 Total: 10.99 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -3.67 Total: -8.60 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.08 Total: -53.41 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.40 Total: -19.61 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.10 Total: 20.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.90 -9.86 -44.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077420288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.174 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds