Wall clock time and date at job start Tue Mar 31 2020 05:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99824 * 2 1 4 4 H 1.48497 * 109.47476 * 240.00161 * 3 2 1 5 5 H 1.48503 * 109.46947 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47032 * 119.99946 * 3 2 1 7 7 C 1.38814 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99754 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99609 * 0.02562 * 7 2 1 10 10 C 1.47017 * 125.65558 * 359.97037 * 9 7 2 11 11 C 1.54318 * 107.27651 * 178.98761 * 10 9 7 12 12 H 1.09001 * 110.71820 * 96.16788 * 11 10 9 13 13 O 1.42892 * 110.72272 * 219.44583 * 11 10 9 14 14 C 1.55161 * 102.94026 * 337.81316 * 11 10 9 15 15 H 1.09005 * 111.00162 * 277.38172 * 14 11 10 16 16 N 1.46498 * 111.00339 * 153.57329 * 14 11 10 17 17 C 1.34774 * 120.00024 * 154.99288 * 16 14 11 18 18 O 1.21285 * 119.99869 * 0.02562 * 17 16 14 19 19 C 1.50706 * 120.00139 * 179.97438 * 17 16 14 20 20 H 1.08998 * 109.67330 * 59.49338 * 19 17 16 21 21 C 1.53326 * 109.67945 * 180.02562 * 19 17 16 22 22 C 1.52737 * 108.41399 * 189.57440 * 21 19 17 23 23 C 1.50647 * 110.57898 * 308.93878 * 22 21 19 24 24 C 1.38906 * 117.74072 * 197.39796 * 23 22 21 25 25 C 1.37924 * 120.54397 * 180.55891 * 24 23 22 26 26 C 1.38265 * 119.77272 * 359.97438 * 25 24 23 27 27 C 1.37924 * 119.77006 * 359.88507 * 26 25 24 28 28 C 1.37665 * 122.57107 * 17.73954 * 23 22 21 29 29 C 1.50630 * 122.56722 * 359.27904 * 28 23 22 30 30 C 1.47429 * 125.64462 * 180.02562 * 9 7 2 31 31 H 0.96997 * 120.00459 * 359.97438 * 1 2 3 32 32 H 1.09008 * 109.88019 * 59.57330 * 10 9 7 33 33 H 1.08998 * 110.01350 * 298.48407 * 10 9 7 34 34 H 0.96703 * 114.00553 * 293.52515 * 13 11 10 35 35 H 0.97001 * 120.00175 * 335.00522 * 16 14 11 36 36 H 1.09002 * 109.68443 * 309.31969 * 21 19 17 37 37 H 1.08999 * 109.68122 * 69.83692 * 21 19 17 38 38 H 1.09005 * 109.25334 * 69.19067 * 22 21 19 39 39 H 1.08994 * 109.25313 * 188.62041 * 22 21 19 40 40 H 1.07997 * 119.72521 * 0.56153 * 24 23 22 41 41 H 1.08003 * 120.11250 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.11240 * 179.85888 * 26 25 24 43 43 H 1.08005 * 119.72647 * 180.02562 * 27 26 25 44 44 H 1.09002 * 109.25353 * 257.50390 * 29 28 23 45 45 H 1.09004 * 109.22158 * 138.06125 * 29 28 23 46 46 H 1.08998 * 110.36993 * 85.24001 * 30 9 7 47 47 H 1.09001 * 110.36926 * 322.92052 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1374 -2.5328 -0.0016 11 6 -0.4483 -4.0441 -0.0291 12 1 -0.6314 -4.4185 0.9781 13 8 -1.5626 -4.3157 -0.8814 14 6 0.8522 -4.6558 -0.6139 15 1 0.8569 -4.5963 -1.7023 16 7 1.0294 -6.0393 -0.1658 17 6 1.7597 -6.8985 -0.9041 18 8 2.2704 -6.5261 -1.9392 19 6 1.9425 -8.3215 -0.4429 20 1 0.9701 -8.8057 -0.3524 21 6 2.8077 -9.0845 -1.4529 22 6 2.7775 -10.5680 -1.0905 23 6 3.1101 -10.7643 0.3656 24 6 3.4873 -12.0364 0.7768 25 6 3.7932 -12.2837 2.0988 26 6 3.7248 -11.2575 3.0229 27 6 3.3533 -9.9931 2.6160 28 6 3.0460 -9.7416 1.2849 29 6 2.6530 -8.3369 0.9089 30 6 1.9336 -3.7311 -0.0017 31 1 -0.4851 0.8400 0.0004 32 1 -0.5575 -2.0519 -0.8851 33 1 -0.5567 -2.0844 0.8990 34 1 -2.4004 -3.9546 -0.5607 35 1 0.6211 -6.3371 0.6621 36 1 2.4095 -8.9438 -2.4577 37 1 3.8330 -8.7169 -1.4095 38 1 1.7822 -10.9661 -1.2883 39 1 3.5054 -11.1020 -1.7012 40 1 3.5414 -12.8383 0.0555 41 1 4.0853 -13.2755 2.4110 42 1 3.9609 -11.4455 4.0599 43 1 3.3004 -9.1919 3.3384 44 1 3.5475 -7.7165 0.8520 45 1 1.9850 -7.9350 1.6708 46 1 2.1665 -4.0422 1.0166 47 1 2.8332 -3.7402 -0.6171 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077740262.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:40 Heat of formation + Delta-G solvation = -46.415704 kcal Electronic energy + Delta-G solvation = -28082.754067 eV Core-core repulsion = 24230.169559 eV Total energy + Delta-G solvation = -3852.584507 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62788 -39.42296 -37.92127 -35.86939 -35.06848 -34.08584 -32.84241 -31.69897 -30.57961 -29.24271 -28.25736 -27.00832 -24.78148 -24.14621 -23.14655 -22.38508 -20.85466 -20.47244 -20.19089 -19.36325 -17.39763 -17.02125 -16.73878 -16.50167 -15.94189 -15.70699 -15.11257 -14.76062 -14.57623 -14.37219 -14.14663 -14.01709 -13.85894 -13.39285 -13.27425 -13.08414 -12.80419 -12.68873 -12.37955 -12.26268 -12.04303 -11.74538 -11.65226 -11.46843 -11.25512 -11.19229 -11.00933 -10.89846 -10.79916 -10.61240 -10.19722 -9.91060 -9.84381 -9.67880 -9.28361 -8.98847 -8.81806 -8.77656 -8.62334 -6.92180 -5.76718 -3.11353 1.13059 1.14068 2.79766 3.30066 3.39882 3.43786 3.45206 3.51154 4.30940 4.40207 4.45117 4.62275 4.65741 4.70017 4.75967 4.86480 4.90212 5.05419 5.15833 5.20417 5.26738 5.29471 5.42808 5.43698 5.53992 5.57965 5.62840 5.65530 5.70797 5.79202 5.82064 5.84955 5.99804 6.08548 6.12991 6.15193 6.27114 6.28291 6.43811 6.52604 6.61056 6.78533 6.89384 7.31868 7.45918 7.68678 7.74533 8.11210 8.17002 8.42720 9.14563 9.74676 10.37750 11.34985 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002474 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.469451 B =11316.349395 C =11751.577706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.068 3.932 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.137 3.863 15 H 0.105 0.895 16 N -0.714 5.714 17 C 0.518 3.482 18 O -0.536 6.536 19 C -0.105 4.105 20 H 0.099 0.901 21 C -0.099 4.099 22 C -0.082 4.082 23 C -0.075 4.075 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.072 4.072 29 C -0.072 4.072 30 C 0.131 3.869 31 H 0.254 0.746 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.376 0.624 35 H 0.396 0.604 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.023 0.977 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.087 -24.324 4.852 24.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.357 4.357 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.008 3.992 12 H 0.074 0.926 13 O -0.368 6.368 14 C 0.032 3.968 15 H 0.123 0.877 16 N -0.365 5.365 17 C 0.303 3.697 18 O -0.412 6.412 19 C -0.126 4.126 20 H 0.117 0.883 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.075 4.075 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.072 4.072 29 C -0.110 4.110 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.223 0.777 35 H 0.230 0.770 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.041 0.959 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.858 -24.103 3.736 24.558 hybrid contribution -0.232 1.019 0.971 1.427 sum 2.626 -23.084 4.707 23.705 Atomic orbital electron populations 1.69909 1.04936 1.25341 1.57001 1.24817 0.95781 0.97786 1.01976 0.86145 0.78442 0.82869 0.77990 1.21023 1.21550 1.21107 1.19039 0.90520 0.82090 1.44071 0.90203 1.44231 1.01204 0.99893 1.87429 1.21813 0.85396 0.87844 1.02144 1.23461 0.85619 0.98549 0.91590 0.92553 1.86468 1.18761 1.80022 1.51533 1.22261 0.94343 0.79166 1.01049 0.87725 1.45949 1.53078 1.11415 1.26014 1.20476 0.78169 0.87031 0.84006 1.90716 1.47969 1.78512 1.24041 1.21322 1.01356 0.93352 0.96607 0.88318 1.21372 1.00556 0.92993 0.98799 1.20537 1.02200 0.97266 0.91862 1.19682 0.99272 0.92967 0.95553 1.21151 1.00274 0.96333 0.96178 1.21060 1.00585 0.99094 0.93455 1.21059 1.00405 0.93189 0.99531 1.21180 0.99840 0.97209 0.95358 1.19541 0.99694 0.94827 0.93139 1.20448 1.01132 0.93746 0.95641 1.21836 0.94883 0.85741 0.97210 0.93590 0.92151 0.93350 0.77716 0.77004 0.90135 0.90883 0.90449 0.90362 0.86237 0.86260 0.86165 0.85987 0.89698 0.90073 0.95921 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.60 -15.35 3.39 -170.08 -0.58 -15.92 16 10 C 0.15 3.64 5.15 -3.07 -0.02 3.62 16 11 C 0.07 1.24 3.98 -24.90 -0.10 1.14 16 12 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -9.72 13.39 -35.23 -0.47 -10.19 16 14 C 0.14 2.57 3.15 -65.79 -0.21 2.36 16 15 H 0.10 2.29 7.54 -51.93 -0.39 1.90 16 16 N -0.71 -10.32 5.11 -51.73 -0.26 -10.59 16 17 C 0.52 7.64 7.13 -10.98 -0.08 7.56 16 18 O -0.54 -10.21 15.50 5.55 0.09 -10.13 16 19 C -0.10 -1.12 2.55 -91.74 -0.23 -1.35 16 20 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 21 C -0.10 -1.04 4.71 -26.70 -0.13 -1.17 16 22 C -0.08 -0.68 5.67 -28.04 -0.16 -0.84 16 23 C -0.07 -0.69 5.74 -104.61 -0.60 -1.29 16 24 C -0.12 -1.02 9.61 -39.45 -0.38 -1.39 16 25 C -0.12 -0.99 10.05 -39.69 -0.40 -1.39 16 26 C -0.12 -1.01 10.05 -39.69 -0.40 -1.41 16 27 C -0.12 -1.05 9.61 -39.45 -0.38 -1.43 16 28 C -0.07 -0.69 5.74 -104.62 -0.60 -1.29 16 29 C -0.07 -0.69 4.85 -28.06 -0.14 -0.83 16 30 C 0.13 2.78 6.93 -2.53 -0.02 2.76 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.06 1.62 7.30 -51.92 -0.38 1.24 16 33 H 0.05 1.23 7.50 -51.93 -0.39 0.84 16 34 H 0.38 4.91 9.12 45.56 0.42 5.32 16 35 H 0.40 4.50 8.26 -40.82 -0.34 4.17 16 36 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 37 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.12 0.78 8.05 -52.49 -0.42 0.36 16 41 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.12 0.92 8.05 -52.48 -0.42 0.50 16 44 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 45 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -33.77 377.86 -10.56 -44.34 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.50 Total: 7.77 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.08 Total: -1.82 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.27 Total: -52.75 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.39 Total: -20.32 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.77 -10.56 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077740262.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.078 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds