Wall clock time and date at job start Tue Mar 31 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 119.99863 * 2 1 4 4 H 1.48501 * 109.46852 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46938 * 299.99928 * 3 2 1 6 6 H 1.48496 * 109.47058 * 59.99892 * 3 2 1 7 7 C 1.38813 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00023 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64743 * 359.95984 * 9 7 2 11 11 C 1.54910 * 104.83010 * 204.16357 * 10 9 7 12 12 H 1.09001 * 111.00657 * 81.06749 * 11 10 9 13 13 O 1.42900 * 111.00110 * 204.91607 * 11 10 9 14 14 C 1.55149 * 101.58202 * 322.99092 * 11 10 9 15 15 H 1.09002 * 110.87340 * 277.06789 * 14 11 10 16 16 N 1.46504 * 110.72241 * 153.86493 * 14 11 10 17 17 C 1.34770 * 120.00020 * 160.01974 * 16 14 11 18 18 O 1.21281 * 120.00291 * 0.02562 * 17 16 14 19 19 C 1.50705 * 120.00057 * 179.97438 * 17 16 14 20 20 H 1.08998 * 109.68060 * 299.48150 * 19 17 16 21 21 C 1.53336 * 109.68548 * 178.91383 * 19 17 16 22 22 C 1.52733 * 108.38021 * 170.36534 * 21 19 17 23 23 C 1.50636 * 110.59495 * 51.03322 * 22 21 19 24 24 C 1.38908 * 117.74651 * 162.54254 * 23 22 21 25 25 C 1.37937 * 120.54472 * 179.74930 * 24 23 22 26 26 C 1.38269 * 119.77004 * 359.97438 * 25 24 23 27 27 C 1.37928 * 119.77045 * 0.12069 * 26 25 24 28 28 C 1.37660 * 122.56809 * 342.47780 * 23 22 21 29 29 C 1.50629 * 122.57230 * 0.39678 * 28 23 22 30 30 C 1.47025 * 125.64469 * 179.97438 * 9 7 2 31 31 H 0.97000 * 120.00560 * 359.97438 * 1 2 3 32 32 H 1.09006 * 110.36620 * 322.99872 * 10 9 7 33 33 H 1.08994 * 110.36650 * 85.21315 * 10 9 7 34 34 H 0.96698 * 114.00044 * 292.19153 * 13 11 10 35 35 H 0.97002 * 119.99544 * 340.02697 * 16 14 11 36 36 H 1.09002 * 109.68050 * 290.08822 * 21 19 17 37 37 H 1.08998 * 109.67872 * 50.60481 * 21 19 17 38 38 H 1.08998 * 109.25217 * 171.31655 * 22 21 19 39 39 H 1.09001 * 109.24917 * 290.78085 * 22 21 19 40 40 H 1.07995 * 119.73337 * 359.75242 * 24 23 22 41 41 H 1.07995 * 120.11517 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.10944 * 180.09573 * 26 25 24 43 43 H 1.08004 * 119.72843 * 179.97438 * 27 26 25 44 44 H 1.08998 * 109.25547 * 222.11424 * 29 28 23 45 45 H 1.09008 * 109.25503 * 102.68675 * 29 28 23 46 46 H 1.08995 * 109.88022 * 59.48945 * 30 9 7 47 47 H 1.08999 * 110.01130 * 298.39261 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0008 11 6 -0.4015 -3.9319 0.6137 12 1 -0.3517 -3.8971 1.7020 13 8 -1.6567 -4.4572 0.1770 14 6 0.7784 -4.7524 0.0290 15 1 0.5479 -5.1010 -0.9777 16 7 1.1087 -5.8806 0.9033 17 6 1.8007 -6.9299 0.4169 18 8 2.1504 -6.9400 -0.7444 19 6 2.1410 -8.0902 1.3163 20 1 2.7563 -7.7432 2.1464 21 6 2.9018 -9.1562 0.5188 22 6 3.4398 -10.1976 1.4979 23 6 2.3421 -10.6893 2.4047 24 6 2.5540 -11.8784 3.0908 25 6 1.5895 -12.3791 3.9403 26 6 0.4018 -11.6921 4.1114 27 6 0.1887 -10.5123 3.4295 28 6 1.1578 -10.0077 2.5717 29 6 0.8568 -8.7175 1.8550 30 6 1.9319 -3.7275 0.0005 31 1 -0.4851 0.8400 0.0004 32 1 -0.5992 -1.7584 0.6161 33 1 -0.5276 -2.4855 -1.0173 34 1 -2.4238 -3.9767 0.5171 35 1 0.8293 -5.8724 1.8321 36 1 2.2272 -9.6342 -0.1916 37 1 3.7301 -8.6924 -0.0167 38 1 3.8482 -11.0394 0.9388 39 1 4.2297 -9.7496 2.1009 40 1 3.4816 -12.4153 2.9581 41 1 1.7615 -13.3044 4.4700 42 1 -0.3565 -12.0784 4.7764 43 1 -0.7395 -9.9765 3.5634 44 1 0.3811 -8.0238 2.5482 45 1 0.1786 -8.9169 1.0252 46 1 2.5588 -3.8505 0.8836 47 1 2.5294 -3.8664 -0.9004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077740263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:43 Heat of formation + Delta-G solvation = -45.300688 kcal Electronic energy + Delta-G solvation = -28065.679674 eV Core-core repulsion = 24213.143517 eV Total energy + Delta-G solvation = -3852.536157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63256 -39.43441 -37.89598 -35.87119 -35.08720 -34.09319 -32.85000 -31.72012 -30.58083 -29.24754 -28.28228 -26.95904 -24.83603 -24.14771 -23.14537 -22.38788 -20.92329 -20.54707 -19.94758 -19.37102 -17.41306 -17.04204 -16.77152 -16.54875 -15.95144 -15.62665 -15.13658 -14.81886 -14.65819 -14.42722 -14.03515 -13.92380 -13.85152 -13.42780 -13.30669 -13.11267 -12.92327 -12.74087 -12.33454 -12.22510 -11.94479 -11.69574 -11.65249 -11.51216 -11.29319 -11.17535 -10.99863 -10.99123 -10.86829 -10.61023 -10.17306 -9.94943 -9.75035 -9.68888 -9.24724 -8.99255 -8.78692 -8.76244 -8.74179 -6.93749 -5.74158 -3.16479 1.12651 1.13646 2.79982 3.31112 3.36332 3.42180 3.44601 3.50725 4.30982 4.37166 4.42855 4.59676 4.66334 4.69682 4.75779 4.85931 4.89997 5.05111 5.15249 5.25945 5.27806 5.29679 5.40065 5.43686 5.54199 5.60417 5.62171 5.65533 5.70182 5.78678 5.84031 5.86211 6.00360 6.07865 6.14093 6.19336 6.26756 6.27760 6.43521 6.48753 6.66854 6.78133 6.92126 7.29795 7.51188 7.66846 7.74078 8.07430 8.23454 8.42449 9.12179 9.72636 10.35007 11.30228 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.002408 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.120693 B =11624.236262 C =12109.992219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.129 3.871 11 C 0.068 3.932 12 H 0.061 0.939 13 O -0.566 6.566 14 C 0.142 3.858 15 H 0.099 0.901 16 N -0.714 5.714 17 C 0.517 3.483 18 O -0.537 6.537 19 C -0.106 4.106 20 H 0.100 0.900 21 C -0.099 4.099 22 C -0.082 4.082 23 C -0.074 4.074 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.072 4.072 29 C -0.072 4.072 30 C 0.130 3.870 31 H 0.253 0.747 32 H 0.113 0.887 33 H 0.026 0.974 34 H 0.377 0.623 35 H 0.397 0.603 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.030 0.970 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -22.673 9.374 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.003 3.997 11 C 0.007 3.993 12 H 0.079 0.921 13 O -0.371 6.371 14 C 0.037 3.963 15 H 0.117 0.883 16 N -0.365 5.365 17 C 0.303 3.697 18 O -0.414 6.414 19 C -0.127 4.127 20 H 0.118 0.882 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.074 4.074 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.136 4.136 28 C -0.072 4.072 29 C -0.109 4.109 30 C 0.003 3.997 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.043 0.957 34 H 0.224 0.776 35 H 0.231 0.769 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.047 0.953 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.123 -22.876 8.204 24.328 hybrid contribution -0.106 1.223 0.815 1.473 sum 1.017 -21.653 9.020 23.478 Atomic orbital electron populations 1.69741 1.04946 1.24864 1.57772 1.24806 0.95789 0.97846 1.02250 0.85948 0.78697 0.83287 0.77279 1.20441 1.21646 1.21686 1.19157 0.90645 0.82121 1.42999 0.90149 1.44304 1.01499 0.99820 1.87194 1.22543 0.85557 0.91978 0.99575 1.23628 0.82615 0.96076 0.96971 0.92074 1.86411 1.15558 1.58741 1.76340 1.22000 0.94076 0.85230 0.94983 0.88334 1.46024 1.56753 1.19386 1.14295 1.20480 0.77664 0.83136 0.88413 1.90705 1.52712 1.80131 1.17845 1.21337 0.98312 0.94257 0.98820 0.88199 1.21371 1.00657 0.94684 0.96971 1.20538 0.95952 0.99060 0.96350 1.19684 0.95053 0.94853 0.97850 1.21157 0.99390 0.95989 0.97386 1.21063 0.94195 0.99950 0.98979 1.21056 0.97564 0.95574 1.00007 1.21173 0.98967 0.96569 0.96892 1.19544 0.93834 0.96366 0.97482 1.20438 0.96712 0.93801 0.99924 1.21623 0.93736 0.85321 0.98999 0.93641 0.86988 0.95651 0.77599 0.76871 0.90985 0.90048 0.90358 0.90383 0.86220 0.86252 0.86173 0.86027 0.90098 0.89828 0.95255 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 21.83 29.55 -169.99 -5.02 16.80 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.22 -6.12 10.27 -15.06 -0.15 -6.28 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.60 -15.33 3.39 -170.07 -0.58 -15.90 16 10 C 0.13 3.06 5.62 -2.53 -0.01 3.04 16 11 C 0.07 1.25 4.04 -24.59 -0.10 1.15 16 12 H 0.06 1.04 8.00 -51.93 -0.42 0.62 16 13 O -0.57 -9.50 13.47 -35.23 -0.47 -9.98 16 14 C 0.14 2.66 2.97 -66.10 -0.20 2.47 16 15 H 0.10 2.07 7.69 -51.93 -0.40 1.67 16 16 N -0.71 -10.55 5.04 -52.03 -0.26 -10.82 16 17 C 0.52 7.71 7.14 -10.99 -0.08 7.63 16 18 O -0.54 -10.18 15.57 5.56 0.09 -10.09 16 19 C -0.11 -1.15 2.55 -91.73 -0.23 -1.38 16 20 H 0.10 0.97 8.10 -51.93 -0.42 0.54 16 21 C -0.10 -1.05 4.72 -26.69 -0.13 -1.17 16 22 C -0.08 -0.70 5.67 -28.05 -0.16 -0.86 16 23 C -0.07 -0.70 5.74 -104.62 -0.60 -1.30 16 24 C -0.12 -1.02 9.61 -39.44 -0.38 -1.40 16 25 C -0.12 -0.99 10.05 -39.68 -0.40 -1.38 16 26 C -0.12 -1.01 10.05 -39.68 -0.40 -1.41 16 27 C -0.12 -1.05 9.61 -39.44 -0.38 -1.42 16 28 C -0.07 -0.70 5.74 -104.62 -0.60 -1.30 16 29 C -0.07 -0.69 4.82 -28.05 -0.14 -0.82 16 30 C 0.13 2.84 6.99 -3.06 -0.02 2.82 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 33 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.38 4.79 9.12 45.56 0.42 5.21 16 35 H 0.40 4.76 8.13 -40.82 -0.33 4.43 16 36 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 37 H 0.08 0.93 7.80 -51.93 -0.40 0.53 16 38 H 0.08 0.58 8.13 -51.93 -0.42 0.15 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.12 0.79 8.05 -52.49 -0.42 0.36 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.90 8.05 -52.48 -0.42 0.48 16 44 H 0.08 0.67 7.81 -51.93 -0.41 0.27 16 45 H 0.08 0.87 8.11 -51.92 -0.42 0.45 16 46 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -33.01 377.19 -10.53 -43.54 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.45 Total: 8.53 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -4.07 Total: -2.03 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.28 Total: -52.46 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.39 Total: -20.07 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.01 -10.53 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077740263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.760 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds