Wall clock time and date at job start Tue Mar 31 2020 05:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 115.54886 * 2 1 4 4 O 1.21285 * 120.00008 * 145.58588 * 3 2 1 5 5 N 1.34776 * 119.99890 * 325.57948 * 3 2 1 6 6 C 1.46495 * 119.99803 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.78470 * 36.79251 * 6 5 3 8 8 C 1.54325 * 110.72250 * 273.54657 * 6 5 3 9 9 N 1.47018 * 107.40412 * 219.52320 * 8 6 5 10 10 C 1.36936 * 125.64999 * 178.82784 * 9 8 6 11 11 H 1.08004 * 119.99836 * 359.97438 * 10 9 8 12 12 C 1.38815 * 120.00358 * 180.02562 * 10 9 8 13 13 N 1.31619 * 119.99732 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00198 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46852 * 89.99788 * 14 12 10 16 16 H 1.48497 * 109.47226 * 209.99639 * 14 12 10 17 17 H 1.48500 * 109.46864 * 330.00142 * 14 12 10 18 18 C 1.47426 * 108.70517 * 358.86539 * 9 8 6 19 19 C 1.54914 * 104.82992 * 24.12623 * 18 9 8 20 20 H 1.09000 * 111.00339 * 81.07133 * 19 18 9 21 21 O 1.42897 * 111.00144 * 204.87916 * 19 18 9 22 22 C 1.53001 * 117.50139 * 214.32863 * 2 1 3 23 23 C 1.52999 * 117.50035 * 145.66903 * 2 1 3 24 24 H 1.09004 * 117.49996 * 215.00333 * 23 2 1 25 25 C 1.50699 * 117.49995 * 0.02562 * 23 2 1 26 26 C 1.38237 * 119.99466 * 59.73184 * 25 23 2 27 27 C 1.38245 * 119.99812 * 179.74679 * 26 25 23 28 28 C 1.38242 * 119.99382 * 0.52422 * 27 26 25 29 29 C 1.38229 * 120.00463 * 359.74545 * 28 27 26 30 30 C 1.38232 * 120.00289 * 240.00094 * 25 23 2 31 31 H 1.08998 * 109.47026 * 34.41750 * 1 2 3 32 32 H 1.09001 * 109.47126 * 154.42007 * 1 2 3 33 33 H 1.09005 * 109.46837 * 274.41802 * 1 2 3 34 34 H 0.96997 * 119.99763 * 0.02562 * 5 3 2 35 35 H 1.09002 * 109.88192 * 100.02760 * 8 6 5 36 36 H 1.09000 * 109.88128 * 339.01612 * 8 6 5 37 37 H 0.96996 * 119.99954 * 180.02562 * 13 12 10 38 38 H 1.08999 * 110.36956 * 142.96999 * 18 9 8 39 39 H 1.09003 * 110.36599 * 265.28903 * 18 9 8 40 40 H 0.96700 * 114.00238 * 298.54965 * 21 19 18 41 41 H 1.08998 * 117.49560 * 359.97438 * 22 2 1 42 42 H 1.09004 * 117.50012 * 144.97256 * 22 2 1 43 43 H 1.07993 * 120.00415 * 359.97438 * 26 25 23 44 44 H 1.07991 * 119.99886 * 180.29271 * 27 26 25 45 45 H 1.07994 * 119.99158 * 179.77082 * 28 27 26 46 46 H 1.07999 * 120.00098 * 179.97438 * 29 28 27 47 47 H 1.08003 * 119.99785 * 0.02562 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2232 1.5331 0.5936 5 7 1.6019 2.3829 -0.6598 6 6 2.2340 3.7044 -0.6602 7 1 3.3194 3.6140 -0.7028 8 6 1.8018 4.5169 0.5786 9 7 1.6011 5.9072 0.1447 10 6 1.1915 6.9413 0.9434 11 1 0.9860 6.7672 1.9893 12 6 1.0393 8.2132 0.4086 13 7 1.2883 8.4251 -0.8664 14 14 0.4798 9.6238 1.4980 15 1 1.6659 10.2874 2.0965 16 1 -0.2793 10.6068 0.6840 17 1 -0.3917 9.0983 2.5794 18 6 1.9130 6.0034 -1.2930 19 6 1.7083 4.5686 -1.8401 20 1 0.6534 4.3691 -2.0283 21 8 2.4856 4.3546 -3.0199 22 6 2.2365 -1.1207 -0.7653 23 6 2.2365 -1.1207 0.7654 24 1 3.1714 -0.8746 1.2689 25 6 1.3721 -2.1404 1.4611 26 6 0.4818 -2.9053 0.7308 27 6 -0.3074 -3.8445 1.3682 28 6 -0.2140 -4.0110 2.7374 29 6 0.6723 -3.2423 3.4683 30 6 1.4655 -2.3071 2.8301 31 1 -0.3633 0.8477 -0.5808 32 1 -0.3633 -0.9269 -0.4437 33 1 -0.3633 0.0792 1.0247 34 1 0.7673 2.2442 -1.1343 35 1 2.5810 4.4749 1.3397 36 1 0.8708 4.1155 0.9789 37 1 1.1823 9.3139 -1.2400 38 1 1.2307 6.6975 -1.7836 39 1 2.9460 6.3204 -1.4366 40 1 2.2559 4.9406 -3.7539 41 1 1.6112 -1.8583 -1.2685 42 1 3.1712 -0.8745 -1.2692 43 1 0.4054 -2.7718 -0.3381 44 1 -0.9996 -4.4453 0.7971 45 1 -0.8332 -4.7421 3.2358 46 1 0.7450 -3.3722 4.5380 47 1 2.1577 -1.7061 3.4013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077816253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:10 Heat of formation + Delta-G solvation = -2.079572 kcal Electronic energy + Delta-G solvation = -28005.304082 eV Core-core repulsion = 24154.642134 eV Total energy + Delta-G solvation = -3850.661949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.66495 -39.33219 -38.03539 -36.62313 -35.08172 -34.10208 -31.83812 -31.24335 -30.88633 -28.96424 -28.20300 -26.99093 -24.70798 -24.08538 -23.36695 -22.37196 -20.81105 -20.66319 -20.05957 -19.25483 -17.32347 -17.13162 -16.93402 -16.70120 -15.77767 -15.38440 -15.20230 -14.85535 -14.74222 -14.32679 -14.02758 -13.88659 -13.61598 -13.48365 -13.35553 -12.98190 -12.91317 -12.49240 -12.47960 -12.23026 -12.13851 -11.93513 -11.47481 -11.40373 -11.28636 -11.19113 -11.01563 -10.84987 -10.73347 -10.30299 -10.19281 -9.95483 -9.72784 -9.70218 -9.30592 -9.13757 -8.78940 -8.75219 -8.73695 -6.94100 -5.74302 -3.16518 1.06102 1.17447 2.61426 3.21329 3.36866 3.41760 3.43377 3.45881 3.87382 4.30237 4.39186 4.46605 4.56598 4.59270 4.70256 4.75515 4.82575 4.88125 4.98450 5.23749 5.26129 5.35524 5.39886 5.41944 5.53066 5.58965 5.60710 5.65464 5.66779 5.75583 5.80635 5.85369 5.91680 5.98440 6.08741 6.17121 6.25186 6.28892 6.43038 6.48128 6.66945 6.76437 6.92282 7.28530 7.50419 7.66292 7.73728 8.07541 8.23160 8.41508 9.12026 9.72447 10.34877 11.30181 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.002543 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.205515 B =11008.173308 C =11925.611925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.146 4.146 3 C 0.549 3.451 4 O -0.539 6.539 5 N -0.708 5.708 6 C 0.142 3.858 7 H 0.099 0.901 8 C 0.130 3.870 9 N -0.600 5.600 10 C -0.222 4.222 11 H 0.080 0.920 12 C -0.011 4.011 13 N -0.925 5.925 14 Si 0.918 3.082 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.129 3.871 19 C 0.067 3.933 20 H 0.061 0.939 21 O -0.566 6.566 22 C -0.143 4.143 23 C -0.084 4.084 24 H 0.127 0.873 25 C -0.046 4.046 26 C -0.118 4.118 27 C -0.119 4.119 28 C -0.126 4.126 29 C -0.118 4.118 30 C -0.109 4.109 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.033 0.967 36 H 0.030 0.970 37 H 0.253 0.747 38 H 0.114 0.886 39 H 0.026 0.974 40 H 0.378 0.622 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.065 -23.621 -0.704 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.149 4.149 3 C 0.335 3.665 4 O -0.416 6.416 5 N -0.359 5.359 6 C 0.038 3.962 7 H 0.117 0.883 8 C 0.003 3.997 9 N -0.328 5.328 10 C -0.350 4.350 11 H 0.098 0.902 12 C -0.206 4.206 13 N -0.574 5.574 14 Si 0.748 3.252 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.206 1.206 18 C 0.003 3.997 19 C 0.007 3.993 20 H 0.079 0.921 21 O -0.371 6.371 22 C -0.180 4.180 23 C -0.102 4.102 24 H 0.144 0.856 25 C -0.046 4.046 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.144 4.144 29 C -0.136 4.136 30 C -0.127 4.127 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.043 0.957 40 H 0.225 0.775 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.087 -23.705 0.087 23.906 hybrid contribution -0.905 1.186 0.042 1.493 sum -3.993 -22.519 0.129 22.871 Atomic orbital electron populations 1.21408 0.90402 1.02515 1.02945 1.21580 0.96029 0.89432 1.07849 1.19361 0.84315 0.84493 0.78339 1.90700 1.23321 1.83905 1.43665 1.45911 1.26959 1.09710 1.53298 1.22049 0.98721 0.80350 0.95122 0.88318 1.21622 0.98072 0.85946 0.94036 1.44287 1.79241 1.03277 1.05958 1.19113 1.37223 0.86699 0.91954 0.90195 1.24801 1.01846 0.97486 0.96510 1.69726 1.55437 1.21046 1.11172 0.86014 0.78204 0.81831 0.79116 1.21503 1.21591 1.20610 1.22577 1.00761 0.91059 0.85305 1.23684 0.92993 0.98432 0.84200 0.92076 1.86398 1.63764 1.63014 1.23971 1.23286 1.02471 0.98447 0.93808 1.21189 0.99963 0.95415 0.93665 0.85552 1.19093 0.96211 0.95793 0.93493 1.21094 0.96296 0.96248 0.99990 1.21113 0.99454 0.98391 0.94790 1.21148 0.99040 0.99879 0.94340 1.21147 0.96340 0.96190 0.99925 1.21047 0.99610 0.98207 0.93854 0.91744 0.91303 0.91414 0.76651 0.94860 0.95201 0.93583 0.86890 0.95653 0.77479 0.87495 0.87713 0.85845 0.86133 0.86257 0.86037 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.55 37.16 0.32 -0.80 16 2 C -0.15 -1.70 2.61 -155.66 -0.41 -2.11 16 3 C 0.55 8.69 7.39 -10.98 -0.08 8.61 16 4 O -0.54 -10.58 15.99 5.55 0.09 -10.49 16 5 N -0.71 -11.03 5.03 -51.90 -0.26 -11.30 16 6 C 0.14 2.73 2.99 -65.96 -0.20 2.53 16 7 H 0.10 2.10 7.70 -51.93 -0.40 1.70 16 8 C 0.13 2.88 6.98 -3.07 -0.02 2.86 16 9 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 10 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 11 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 12 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 13 N -0.93 -26.31 10.09 55.49 0.56 -25.75 16 14 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.13 3.05 5.62 -2.53 -0.01 3.04 16 19 C 0.07 1.26 4.05 -24.44 -0.10 1.16 16 20 H 0.06 1.07 8.01 -51.93 -0.42 0.65 16 21 O -0.57 -9.67 13.48 -35.23 -0.47 -10.15 16 22 C -0.14 -1.40 9.22 -26.69 -0.25 -1.64 16 23 C -0.08 -0.93 5.56 -91.74 -0.51 -1.44 16 24 H 0.13 1.59 7.67 -51.93 -0.40 1.19 16 25 C -0.05 -0.46 5.05 -104.62 -0.53 -0.99 16 26 C -0.12 -1.02 7.77 -39.58 -0.31 -1.33 16 27 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 28 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 29 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 30 C -0.11 -1.08 9.74 -39.58 -0.39 -1.47 16 31 H 0.06 0.58 6.39 -51.93 -0.33 0.25 16 32 H 0.07 0.54 5.88 -51.93 -0.31 0.23 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.40 5.16 6.83 -40.82 -0.28 4.88 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.38 4.94 9.11 45.56 0.42 5.36 16 41 H 0.11 0.79 6.09 -51.93 -0.32 0.48 16 42 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.12 0.87 5.15 -52.49 -0.27 0.60 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -32.99 377.95 -9.87 -42.86 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.95 Total: 10.72 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -3.92 Total: -2.46 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.28 Total: -53.02 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.39 Total: -20.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.99 -9.87 -42.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077816253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.779 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds