Wall clock time and date at job start Tue Mar 31 2020 05:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 115.54886 * 2 1 4 4 O 1.21285 * 120.00008 * 145.58588 * 3 2 1 5 5 N 1.34776 * 119.99890 * 325.57948 * 3 2 1 6 6 C 1.46495 * 119.99803 * 180.02562 * 5 3 2 7 7 H 1.09000 * 110.78470 * 36.79251 * 6 5 3 8 8 C 1.54325 * 110.72250 * 273.54657 * 6 5 3 9 9 N 1.47018 * 107.40412 * 219.52320 * 8 6 5 10 10 C 1.36936 * 125.64999 * 178.82784 * 9 8 6 11 11 H 1.08004 * 119.99836 * 359.97438 * 10 9 8 12 12 C 1.38815 * 120.00358 * 180.02562 * 10 9 8 13 13 N 1.31619 * 119.99732 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00198 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46852 * 89.99788 * 14 12 10 16 16 H 1.48497 * 109.47226 * 209.99639 * 14 12 10 17 17 H 1.48500 * 109.46864 * 330.00142 * 14 12 10 18 18 C 1.47426 * 108.70517 * 358.86539 * 9 8 6 19 19 C 1.54914 * 104.82992 * 24.12623 * 18 9 8 20 20 H 1.09000 * 111.00339 * 81.07133 * 19 18 9 21 21 O 1.42897 * 111.00144 * 204.87916 * 19 18 9 22 22 C 1.53001 * 117.50139 * 214.32863 * 2 1 3 23 23 C 1.52999 * 117.50035 * 145.66903 * 2 1 3 24 24 H 1.09004 * 117.49996 * 215.00333 * 23 2 1 25 25 C 1.50699 * 117.49995 * 0.02562 * 23 2 1 26 26 C 1.38237 * 119.99466 * 59.73184 * 25 23 2 27 27 C 1.38245 * 119.99812 * 179.74679 * 26 25 23 28 28 C 1.38242 * 119.99382 * 0.52422 * 27 26 25 29 29 C 1.38229 * 120.00463 * 359.74545 * 28 27 26 30 30 C 1.38232 * 120.00289 * 240.00094 * 25 23 2 31 31 H 1.08998 * 109.47026 * 34.41750 * 1 2 3 32 32 H 1.09001 * 109.47126 * 154.42007 * 1 2 3 33 33 H 1.09005 * 109.46837 * 274.41802 * 1 2 3 34 34 H 0.96997 * 119.99763 * 0.02562 * 5 3 2 35 35 H 1.09002 * 109.88192 * 100.02760 * 8 6 5 36 36 H 1.09000 * 109.88128 * 339.01612 * 8 6 5 37 37 H 0.96996 * 119.99954 * 180.02562 * 13 12 10 38 38 H 1.08999 * 110.36956 * 142.96999 * 18 9 8 39 39 H 1.09003 * 110.36599 * 265.28903 * 18 9 8 40 40 H 0.96700 * 114.00238 * 298.54965 * 21 19 18 41 41 H 1.08998 * 117.49560 * 359.97438 * 22 2 1 42 42 H 1.09004 * 117.50012 * 144.97256 * 22 2 1 43 43 H 1.07993 * 120.00415 * 359.97438 * 26 25 23 44 44 H 1.07991 * 119.99886 * 180.29271 * 27 26 25 45 45 H 1.07994 * 119.99158 * 179.77082 * 28 27 26 46 46 H 1.07999 * 120.00098 * 179.97438 * 29 28 27 47 47 H 1.08003 * 119.99785 * 0.02562 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 8 3.2232 1.5331 0.5936 5 7 1.6019 2.3829 -0.6598 6 6 2.2340 3.7044 -0.6602 7 1 3.3194 3.6140 -0.7028 8 6 1.8018 4.5169 0.5786 9 7 1.6011 5.9072 0.1447 10 6 1.1915 6.9413 0.9434 11 1 0.9860 6.7672 1.9893 12 6 1.0393 8.2132 0.4086 13 7 1.2883 8.4251 -0.8664 14 14 0.4798 9.6238 1.4980 15 1 1.6659 10.2874 2.0965 16 1 -0.2793 10.6068 0.6840 17 1 -0.3917 9.0983 2.5794 18 6 1.9130 6.0034 -1.2930 19 6 1.7083 4.5686 -1.8401 20 1 0.6534 4.3691 -2.0283 21 8 2.4856 4.3546 -3.0199 22 6 2.2365 -1.1207 -0.7653 23 6 2.2365 -1.1207 0.7654 24 1 3.1714 -0.8746 1.2689 25 6 1.3721 -2.1404 1.4611 26 6 0.4818 -2.9053 0.7308 27 6 -0.3074 -3.8445 1.3682 28 6 -0.2140 -4.0110 2.7374 29 6 0.6723 -3.2423 3.4683 30 6 1.4655 -2.3071 2.8301 31 1 -0.3633 0.8477 -0.5808 32 1 -0.3633 -0.9269 -0.4437 33 1 -0.3633 0.0792 1.0247 34 1 0.7673 2.2442 -1.1343 35 1 2.5810 4.4749 1.3397 36 1 0.8708 4.1155 0.9789 37 1 1.1823 9.3139 -1.2400 38 1 1.2307 6.6975 -1.7836 39 1 2.9460 6.3204 -1.4366 40 1 2.2559 4.9406 -3.7539 41 1 1.6112 -1.8583 -1.2685 42 1 3.1712 -0.8745 -1.2692 43 1 0.4054 -2.7718 -0.3381 44 1 -0.9996 -4.4453 0.7971 45 1 -0.8332 -4.7421 3.2358 46 1 0.7450 -3.3722 4.5380 47 1 2.1577 -1.7061 3.4013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077816253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:09 Heat of formation + Delta-G solvation = -24.430742 kcal Electronic energy + Delta-G solvation = -28006.273302 eV Core-core repulsion = 24154.642134 eV Total energy + Delta-G solvation = -3851.631168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.70901 -40.40481 -39.43483 -37.63426 -36.70712 -35.67282 -33.69692 -31.93675 -31.62246 -30.36326 -29.45956 -28.67119 -26.53456 -24.79782 -24.53185 -23.15801 -22.48107 -21.85069 -21.43259 -20.39862 -19.09247 -18.41262 -18.07349 -17.73456 -17.35159 -16.73247 -16.24185 -16.03757 -15.87277 -15.58241 -15.44762 -15.06763 -14.86998 -14.68558 -14.29837 -14.26384 -14.03611 -13.82770 -13.63286 -13.35681 -13.26871 -13.21834 -13.04661 -12.88447 -12.83089 -12.74445 -12.09931 -12.07625 -11.95895 -11.86283 -11.51092 -11.43668 -11.21900 -11.08519 -10.81456 -10.76310 -10.23809 -9.76882 -9.45483 -9.00891 -7.84840 -5.31265 0.39759 0.54213 1.42424 1.46254 1.48069 1.56782 1.96672 2.44819 2.64551 3.03380 3.08121 3.26704 3.45798 3.57523 3.58439 3.70834 3.81346 3.93945 4.00271 4.02264 4.16517 4.17560 4.24441 4.32223 4.38903 4.54896 4.61218 4.69004 4.71847 4.77870 4.79149 4.85855 4.88181 4.91549 5.06860 5.16767 5.19587 5.25898 5.34591 5.39902 5.41361 5.62591 5.64313 5.67303 5.75064 6.15228 6.18143 6.46892 6.83498 7.02082 7.16170 7.65533 8.27927 9.17139 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017965 B = 0.002543 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.205515 B =11008.173308 C =11925.611925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.151 4.151 3 C 0.544 3.456 4 O -0.585 6.585 5 N -0.696 5.696 6 C 0.156 3.844 7 H 0.074 0.926 8 C 0.133 3.867 9 N -0.618 5.618 10 C -0.246 4.246 11 H 0.079 0.921 12 C -0.060 4.060 13 N -0.946 5.946 14 Si 0.984 3.016 15 H -0.289 1.289 16 H -0.287 1.287 17 H -0.269 1.269 18 C 0.133 3.867 19 C 0.093 3.907 20 H 0.088 0.912 21 O -0.567 6.567 22 C -0.122 4.122 23 C -0.089 4.089 24 H 0.100 0.900 25 C -0.058 4.058 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.129 4.129 29 C -0.127 4.127 30 C -0.133 4.133 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.415 0.585 35 H 0.011 0.989 36 H 0.038 0.962 37 H 0.252 0.748 38 H 0.094 0.906 39 H -0.008 1.008 40 H 0.398 0.602 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.134 0.866 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 -25.836 -1.653 26.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.154 4.154 3 C 0.332 3.668 4 O -0.465 6.465 5 N -0.348 5.348 6 C 0.049 3.951 7 H 0.092 0.908 8 C 0.006 3.994 9 N -0.346 5.346 10 C -0.375 4.375 11 H 0.097 0.903 12 C -0.253 4.253 13 N -0.595 5.595 14 Si 0.812 3.188 15 H -0.216 1.216 16 H -0.213 1.213 17 H -0.194 1.194 18 C 0.007 3.993 19 C 0.033 3.967 20 H 0.105 0.895 21 O -0.375 6.375 22 C -0.159 4.159 23 C -0.108 4.108 24 H 0.118 0.882 25 C -0.058 4.058 26 C -0.137 4.137 27 C -0.138 4.138 28 C -0.147 4.147 29 C -0.145 4.145 30 C -0.151 4.151 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.010 0.990 40 H 0.248 0.752 41 H 0.159 0.841 42 H 0.116 0.884 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.152 0.848 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.469 -25.948 -0.890 26.533 hybrid contribution -0.098 1.849 0.372 1.889 sum -5.567 -24.099 -0.519 24.740 Atomic orbital electron populations 1.21433 0.88366 1.04273 1.02722 1.21525 0.97217 0.87023 1.09642 1.20158 0.83718 0.85894 0.77005 1.90682 1.25530 1.84825 1.45427 1.45720 1.27431 1.08197 1.53451 1.21582 0.97564 0.81879 0.94034 0.90765 1.21648 0.97631 0.85110 0.95028 1.44539 1.79091 1.04180 1.06791 1.19433 1.37709 0.87853 0.92457 0.90291 1.25634 1.02025 0.99695 0.97926 1.69939 1.55833 1.21287 1.12428 0.85003 0.77637 0.78546 0.77653 1.21615 1.21280 1.19420 1.22413 0.98119 0.94053 0.84731 1.23285 0.94397 0.94569 0.84476 0.89472 1.86371 1.63760 1.63439 1.23912 1.23431 1.02247 0.97346 0.92827 1.21104 0.99218 0.95677 0.94819 0.88219 1.19065 0.96993 0.96235 0.93534 1.21300 0.95670 0.95859 1.00889 1.21471 0.99327 0.98062 0.94953 1.21491 0.98680 0.99795 0.94760 1.21366 0.96305 0.95976 1.00824 1.21158 1.00418 0.99167 0.94325 0.90971 0.88671 0.92501 0.74661 0.97100 0.94363 0.93863 0.88857 0.98958 0.75170 0.84113 0.88428 0.83868 0.83520 0.84061 0.84795 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 8.55 71.98 0.62 -1.23 16 2 C -0.15 -3.34 2.61 -52.93 -0.14 -3.47 16 3 C 0.54 17.25 7.39 87.66 0.65 17.89 16 4 O -0.58 -23.93 15.99 -3.04 -0.05 -23.98 16 5 N -0.70 -21.13 5.03 -436.51 -2.20 -23.32 16 6 C 0.16 6.02 2.99 46.27 0.14 6.16 16 7 H 0.07 3.27 7.70 -2.39 -0.02 3.26 16 8 C 0.13 6.02 6.98 86.73 0.61 6.63 16 9 N -0.62 -32.57 3.39 -691.97 -2.35 -34.91 16 10 C -0.25 -13.95 10.27 84.03 0.86 -13.09 16 11 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 12 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 13 N -0.95 -54.71 10.09 21.65 0.22 -54.49 16 14 Si 0.98 45.19 29.55 68.60 2.03 47.22 16 15 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 18 C 0.13 6.44 5.62 86.86 0.49 6.93 16 19 C 0.09 3.43 4.05 32.08 0.13 3.56 16 20 H 0.09 2.83 8.01 -2.39 -0.02 2.81 16 21 O -0.57 -18.55 13.48 -148.98 -2.01 -20.56 16 22 C -0.12 -2.12 9.22 30.62 0.28 -1.84 16 23 C -0.09 -1.97 5.56 -11.52 -0.06 -2.03 16 24 H 0.10 2.70 7.67 -2.38 -0.02 2.68 16 25 C -0.06 -1.11 5.05 -19.87 -0.10 -1.21 16 26 C -0.12 -1.69 7.77 22.27 0.17 -1.52 16 27 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 28 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 29 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 30 C -0.13 -2.64 9.74 22.27 0.22 -2.43 16 31 H 0.07 1.08 6.39 -2.39 -0.02 1.06 16 32 H 0.09 1.08 5.88 -2.39 -0.01 1.07 16 33 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.41 9.79 6.83 -92.71 -0.63 9.16 16 35 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 37 H 0.25 14.04 8.31 -92.71 -0.77 13.26 16 38 H 0.09 4.92 5.87 -2.39 -0.01 4.91 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H 0.40 9.67 9.11 -74.06 -0.67 9.00 16 41 H 0.14 1.48 6.09 -2.39 -0.01 1.47 16 42 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.14 1.37 5.15 -2.91 -0.02 1.35 16 44 H 0.15 1.02 8.06 -2.92 -0.02 1.00 16 45 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 46 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.11 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -74.21 377.95 0.34 -73.87 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.30 Total: 29.30 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 5.00 Total: 6.88 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -4.33 Total: -112.73 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -2.06 Total: -44.54 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -74.21 0.34 -73.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077816253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.436 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds