Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99851 * 2 1 4 4 C 1.38210 * 120.00096 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99754 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00026 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99892 * 179.97438 * 6 5 4 8 8 H 1.08998 * 115.55013 * 154.33116 * 7 6 5 9 9 C 1.53001 * 117.49990 * 8.62346 * 7 6 5 10 10 C 1.52995 * 117.50011 * 300.00011 * 7 6 5 11 11 H 1.09006 * 117.49853 * 359.97438 * 10 7 6 12 12 C 1.50706 * 117.50147 * 215.00306 * 10 7 6 13 13 O 1.21278 * 119.99878 * 0.08797 * 12 10 7 14 14 N 1.34779 * 119.99835 * 180.08645 * 12 10 7 15 15 C 1.46507 * 119.99387 * 180.02562 * 14 12 10 16 16 H 1.08992 * 110.64181 * 34.30054 * 15 14 12 17 17 C 1.54316 * 110.71787 * 271.15425 * 15 14 12 18 18 N 1.47018 * 107.27203 * 219.44608 * 17 15 14 19 19 C 1.36947 * 125.64977 * 178.97514 * 18 17 15 20 20 H 1.07995 * 119.99928 * 349.94326 * 19 18 17 21 21 C 1.38806 * 119.99547 * 169.94188 * 19 18 17 22 22 N 1.31616 * 120.00478 * 350.42405 * 21 19 18 23 23 Si 1.86802 * 119.99755 * 170.42576 * 21 19 18 24 24 H 1.48500 * 109.47170 * 94.13677 * 23 21 19 25 25 H 1.48501 * 109.47515 * 214.14068 * 23 21 19 26 26 H 1.48511 * 109.46942 * 334.14260 * 23 21 19 27 27 C 1.47418 * 108.70169 * 358.94442 * 18 17 15 28 28 C 1.55123 * 104.94575 * 24.00243 * 27 18 17 29 29 H 1.09003 * 110.93333 * 81.21497 * 28 27 18 30 30 O 1.42904 * 111.16389 * 205.13355 * 28 27 18 31 31 C 1.38211 * 120.00085 * 180.23287 * 2 1 3 32 32 H 1.09002 * 109.47237 * 90.00001 * 1 2 3 33 33 H 1.09003 * 109.47207 * 209.99633 * 1 2 3 34 34 H 1.08997 * 109.47561 * 329.99824 * 1 2 3 35 35 H 1.08000 * 119.99994 * 0.02562 * 3 2 1 36 36 H 1.07993 * 120.00201 * 179.97438 * 4 3 2 37 37 H 1.08006 * 119.99870 * 179.97438 * 5 4 3 38 38 H 1.09002 * 117.50026 * 145.01980 * 9 7 6 39 39 H 1.09000 * 117.49537 * 359.97438 * 9 7 6 40 40 H 0.96996 * 120.00054 * 359.97438 * 14 12 10 41 41 H 1.09006 * 109.88447 * 338.86634 * 17 15 14 42 42 H 1.09005 * 109.88188 * 99.87349 * 17 15 14 43 43 H 0.97001 * 119.99884 * 179.97438 * 22 21 19 44 44 H 1.09008 * 110.37080 * 142.96903 * 27 18 17 45 45 H 1.09007 * 110.37002 * 265.28471 * 27 18 17 46 46 H 0.96705 * 113.99466 * 292.16792 * 30 28 27 47 47 H 1.08004 * 119.99832 * 0.03967 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0016 7 6 4.3341 -2.5020 0.0022 8 1 3.8015 -3.3522 0.4281 9 6 5.8493 -2.4428 0.2063 10 6 5.2755 -2.7747 -1.1726 11 1 5.3494 -2.0104 -1.9463 12 6 5.3952 -4.1984 -1.6524 13 8 4.7571 -5.0763 -1.1113 14 7 6.2115 -4.4958 -2.6829 15 6 6.3274 -5.8797 -3.1495 16 1 5.3745 -6.3995 -3.0511 17 6 7.4378 -6.6244 -2.3790 18 7 8.1450 -7.4758 -3.3468 19 6 9.2136 -8.2851 -3.0665 20 1 9.7072 -8.2153 -2.1085 21 6 9.6621 -9.1952 -4.0138 22 7 8.9542 -9.4162 -5.1011 23 14 11.2706 -10.1063 -3.7453 24 1 10.9957 -11.4182 -3.1060 25 1 11.9407 -10.3235 -5.0526 26 1 12.1542 -9.3016 -2.8637 27 6 7.5128 -7.3146 -4.6687 28 6 6.8277 -5.9237 -4.6175 29 1 7.5474 -5.1278 -4.8092 30 8 5.7334 -5.8536 -5.5339 31 6 2.1981 -1.1969 -0.0049 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5138 35 1 1.6582 2.1327 0.0004 36 1 4.1203 2.1327 0.0001 37 1 5.3517 0.0001 0.0016 38 1 6.3138 -3.2542 0.7667 39 1 6.3011 -1.4599 0.3397 40 1 6.7215 -3.7935 -3.1159 41 1 8.1311 -5.9061 -1.9412 42 1 6.9964 -7.2389 -1.5943 43 1 9.2679 -10.0519 -5.7632 44 1 8.2669 -7.3384 -5.4554 45 1 6.7691 -8.0948 -4.8313 46 1 5.9972 -5.8778 -6.4640 47 1 1.6581 -2.1323 -0.0093 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077819034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = -11.855646 kcal Electronic energy + Delta-G solvation = -27291.262096 eV Core-core repulsion = 23440.176225 eV Total energy + Delta-G solvation = -3851.085871 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.40066 -39.44850 -38.03833 -36.47663 -35.09934 -34.00988 -32.78160 -31.74577 -31.05477 -28.52840 -27.28056 -27.08383 -25.01271 -23.97253 -23.50631 -22.31764 -20.80576 -20.40031 -19.95638 -19.63633 -17.69403 -17.11689 -16.93676 -16.63485 -15.75664 -15.49582 -15.20628 -14.84053 -14.71065 -14.23162 -14.18876 -14.04182 -13.74590 -13.40936 -13.33692 -12.91123 -12.69371 -12.54471 -12.43882 -12.38970 -12.10603 -12.00172 -11.57878 -11.51002 -11.27247 -11.17824 -10.98100 -10.85437 -10.83010 -10.60613 -10.20033 -9.96536 -9.85652 -9.78634 -9.33064 -8.98876 -8.79155 -8.72097 -8.67292 -6.90082 -5.81860 -3.16059 1.03937 1.14154 2.61227 3.19190 3.36244 3.41908 3.43561 3.45399 3.88315 4.30594 4.39022 4.52009 4.57660 4.62385 4.63583 4.73353 4.85972 4.89985 5.04616 5.08339 5.19217 5.24080 5.30641 5.38557 5.41448 5.49254 5.55382 5.57909 5.63686 5.76035 5.78234 5.82299 5.87222 5.92600 6.06589 6.14550 6.22251 6.33709 6.41198 6.47395 6.67453 6.76044 6.90976 7.24261 7.43609 7.66847 7.71665 8.05329 8.16592 8.41445 9.10083 9.71672 10.36839 11.30945 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025802 B = 0.002109 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.908458 B =13275.663527 C =13739.711784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.045 4.045 7 C -0.086 4.086 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.174 4.174 11 H 0.124 0.876 12 C 0.542 3.458 13 O -0.539 6.539 14 N -0.710 5.710 15 C 0.143 3.857 16 H 0.101 0.899 17 C 0.130 3.870 18 N -0.598 5.598 19 C -0.230 4.230 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.151 3.849 28 C 0.065 3.935 29 H 0.061 0.939 30 O -0.564 6.564 31 C -0.110 4.110 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.399 0.601 41 H 0.030 0.970 42 H 0.034 0.966 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.040 0.960 46 H 0.377 0.623 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 22.605 6.910 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.045 4.045 7 C -0.104 4.104 8 H 0.145 0.855 9 C -0.181 4.181 10 C -0.195 4.195 11 H 0.142 0.858 12 C 0.328 3.672 13 O -0.416 6.416 14 N -0.360 5.360 15 C 0.038 3.962 16 H 0.119 0.881 17 C 0.003 3.997 18 N -0.326 5.326 19 C -0.358 4.358 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.025 3.975 28 C 0.005 3.995 29 H 0.079 0.921 30 O -0.368 6.368 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.233 0.767 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.224 0.776 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.858 21.816 7.744 26.010 hybrid contribution 1.475 -0.237 -0.762 1.677 sum -10.383 21.579 6.982 24.944 Atomic orbital electron populations 1.20803 0.91157 1.02785 1.02441 1.19917 0.96119 0.93054 0.99394 1.21026 0.94317 0.97436 1.01690 1.21091 0.94279 0.97855 0.99985 1.21062 1.00058 0.91903 1.01375 1.19132 0.93314 0.92961 0.99138 1.21079 0.91946 0.96789 1.00620 0.85469 1.23140 0.95353 1.03687 0.95925 1.22344 1.07493 0.96104 0.93607 0.85843 1.19538 0.78932 0.88973 0.79755 1.90704 1.45372 1.48967 1.56586 1.45893 1.45477 1.10190 1.34409 1.21994 1.00666 0.81329 0.92202 0.88110 1.21632 0.91748 0.93292 0.93025 1.44276 1.34902 1.50083 1.03382 1.19039 1.03533 1.12391 1.00878 0.90340 1.24857 0.99444 0.98428 0.97624 1.69934 1.37705 1.37753 1.11166 0.86086 0.82908 0.79663 0.76984 1.21486 1.21561 1.20528 1.22036 0.95992 0.89782 0.89680 1.23640 0.87630 1.00215 0.88030 0.92068 1.86437 1.34039 1.97103 1.19264 1.20910 0.93383 0.97848 1.00612 0.91095 0.91413 0.91598 0.86252 0.86058 0.85841 0.87505 0.87453 0.76736 0.95201 0.94850 0.93562 0.90668 0.94240 0.77615 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.01 0.36 -0.39 16 2 C -0.08 -0.75 5.88 -104.62 -0.62 -1.36 16 3 C -0.13 -1.03 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.13 -1.11 9.30 -39.58 -0.37 -1.48 16 6 C -0.05 -0.46 5.61 -104.63 -0.59 -1.05 16 7 C -0.09 -0.94 5.55 -91.77 -0.51 -1.45 16 8 H 0.13 1.58 7.67 -51.93 -0.40 1.18 16 9 C -0.14 -1.38 9.56 -26.73 -0.26 -1.64 16 10 C -0.17 -1.96 5.82 -91.77 -0.53 -2.49 16 11 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 12 C 0.54 8.38 7.61 -10.98 -0.08 8.30 16 13 O -0.54 -10.47 15.94 5.56 0.09 -10.39 16 14 N -0.71 -10.77 5.12 -52.03 -0.27 -11.03 16 15 C 0.14 2.71 3.00 -66.10 -0.20 2.51 16 16 H 0.10 2.16 7.62 -51.93 -0.40 1.77 16 17 C 0.13 2.84 7.00 -3.07 -0.02 2.82 16 18 N -0.60 -15.30 3.40 -169.94 -0.58 -15.87 16 19 C -0.23 -6.40 10.24 -15.06 -0.15 -6.55 16 20 H 0.08 2.12 7.85 -52.49 -0.41 1.70 16 21 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 22 N -0.92 -26.56 10.68 55.49 0.59 -25.97 16 23 Si 0.91 21.81 29.56 -169.99 -5.03 16.78 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.15 3.57 5.17 -2.42 -0.01 3.56 16 28 C 0.07 1.21 4.06 -24.47 -0.10 1.11 16 29 H 0.06 1.02 8.00 -51.93 -0.42 0.61 16 30 O -0.56 -9.60 13.48 -35.23 -0.47 -10.07 16 31 C -0.11 -1.09 9.39 -39.59 -0.37 -1.47 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.88 6.02 -52.48 -0.32 0.57 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.11 0.78 6.18 -51.93 -0.32 0.46 16 40 H 0.40 4.87 8.54 -40.82 -0.35 4.52 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.08 1.91 6.94 -51.92 -0.36 1.55 16 45 H 0.04 1.04 8.07 -51.93 -0.42 0.63 16 46 H 0.38 4.80 9.12 45.56 0.42 5.22 16 47 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -33.71 388.12 -10.46 -44.17 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -6.32 Total: 9.13 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -4.33 Total: -2.60 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.25 Total: -52.88 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.39 Total: -20.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.71 -10.46 -44.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077819034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.315 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds