Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 120.00046 * 2 1 4 4 C 1.38207 * 119.99528 * 180.22993 * 3 2 1 5 5 C 1.38261 * 120.00408 * 359.80598 * 4 3 2 6 6 C 1.38213 * 119.99714 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99741 * 179.78353 * 2 1 3 8 8 C 1.50698 * 120.00301 * 359.97438 * 7 2 1 9 9 H 1.09008 * 115.54988 * 334.05803 * 8 7 2 10 10 C 1.53000 * 117.50332 * 188.34778 * 8 7 2 11 11 C 1.52996 * 60.00020 * 252.50983 * 10 8 7 12 12 H 1.09009 * 117.51646 * 107.47926 * 11 10 8 13 13 C 1.50695 * 117.50157 * 252.50454 * 11 10 8 14 14 O 1.21281 * 119.99947 * 68.62468 * 13 11 10 15 15 N 1.34781 * 120.00334 * 248.62687 * 13 11 10 16 16 C 1.46496 * 119.99893 * 180.02562 * 15 13 11 17 17 H 1.09000 * 110.88894 * 37.42098 * 16 15 13 18 18 C 1.54916 * 111.00353 * 273.54268 * 16 15 13 19 19 N 1.47419 * 104.83244 * 204.92140 * 18 16 15 20 20 C 1.36937 * 125.64640 * 204.08890 * 19 18 16 21 21 H 1.08009 * 119.99926 * 26.01384 * 20 19 18 22 22 C 1.38810 * 120.00463 * 206.00924 * 20 19 18 23 23 N 1.31612 * 120.00341 * 214.75296 * 22 20 19 24 24 Si 1.86806 * 119.99437 * 34.47912 * 22 20 19 25 25 H 1.48498 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47211 * 120.00081 * 24 22 20 27 27 H 1.48504 * 109.47130 * 239.99986 * 24 22 20 28 28 C 1.47021 * 108.70513 * 24.35439 * 19 18 16 29 29 C 1.54326 * 107.26601 * 358.58463 * 28 19 18 30 30 H 1.09010 * 110.66768 * 96.52412 * 29 28 19 31 31 O 1.42893 * 110.85383 * 219.67181 * 29 28 19 32 32 H 1.08996 * 109.47157 * 270.21743 * 1 2 3 33 33 H 1.09001 * 109.46594 * 30.21515 * 1 2 3 34 34 H 1.08998 * 109.47217 * 150.20997 * 1 2 3 35 35 H 1.07995 * 119.99789 * 0.05566 * 3 2 1 36 36 H 1.08003 * 119.99865 * 179.82916 * 4 3 2 37 37 H 1.08001 * 120.00176 * 179.97438 * 5 4 3 38 38 H 1.08001 * 119.99941 * 180.02562 * 6 5 4 39 39 H 1.09000 * 117.49720 * 145.01682 * 10 8 7 40 40 H 1.08999 * 117.49768 * 0.02562 * 10 8 7 41 41 H 0.97001 * 119.99622 * 359.97438 * 15 13 11 42 42 H 1.08999 * 110.36759 * 86.07255 * 18 16 15 43 43 H 1.09002 * 110.36470 * 323.75793 * 18 16 15 44 44 H 0.96999 * 120.00358 * 4.81834 * 23 22 20 45 45 H 1.08999 * 109.87952 * 118.13563 * 28 19 18 46 46 H 1.09007 * 109.88147 * 239.29643 * 28 19 18 47 47 H 0.96696 * 114.00227 * 293.69350 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0001 -0.0056 6 6 3.5806 -1.1970 -0.0010 7 6 2.1980 -1.1970 0.0045 8 6 1.4446 -2.5020 0.0100 9 1 0.4437 -2.4653 0.4405 10 6 2.2542 -3.7845 0.2119 11 6 1.6736 -3.4550 -1.1648 12 1 2.3691 -3.1379 -1.9419 13 6 0.4986 -4.2714 -1.6380 14 8 -0.5778 -4.1586 -1.0908 15 7 0.6440 -5.1270 -2.6692 16 6 -0.4985 -5.9201 -3.1295 17 1 -1.4199 -5.3399 -3.0792 18 6 -0.6248 -7.2341 -2.3188 19 7 -1.3411 -8.1618 -3.2130 20 6 -2.0803 -9.2435 -2.8145 21 1 -2.5290 -9.2585 -1.8321 22 6 -2.2531 -10.3205 -3.6729 23 7 -3.3873 -10.9881 -3.6712 24 14 -0.8783 -10.8177 -4.8359 25 1 0.2816 -9.9098 -4.6479 26 1 -0.4661 -12.2147 -4.5466 27 1 -1.3579 -10.7234 -6.2382 28 6 -1.1250 -7.7372 -4.6039 29 6 -0.2583 -6.4609 -4.5638 30 1 0.7935 -6.7053 -4.7127 31 8 -0.6990 -5.5159 -5.5408 32 1 -0.3633 0.0039 1.0276 33 1 -0.3632 0.8881 -0.5172 34 1 -0.3633 -0.8918 -0.5106 35 1 1.6583 2.1326 0.0009 36 1 4.1205 2.1326 -0.0076 37 1 5.3517 -0.0002 -0.0097 38 1 4.1205 -2.1324 -0.0011 39 1 1.7862 -4.5916 0.7755 40 1 3.3318 -3.6842 0.3411 41 1 1.5049 -5.2169 -3.1070 42 1 -1.1999 -7.0645 -1.4085 43 1 0.3627 -7.6270 -2.0768 44 1 -4.1272 -10.6858 -3.1216 45 1 -0.6072 -8.5223 -5.1549 46 1 -2.0821 -7.5184 -5.0776 47 1 -0.5710 -5.8059 -6.4543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077819972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -7.047840 kcal Electronic energy + Delta-G solvation = -27705.720659 eV Core-core repulsion = 23854.843271 eV Total energy + Delta-G solvation = -3850.877389 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.54249 -39.54726 -38.26996 -36.42579 -35.31959 -34.13471 -33.09077 -32.07150 -30.87223 -28.81378 -27.66316 -27.12754 -24.90701 -24.18712 -23.36921 -21.67908 -20.89441 -20.72574 -20.23248 -19.93489 -17.84792 -17.53278 -17.05413 -16.73097 -16.15080 -15.66132 -15.17852 -14.93844 -14.78634 -14.66994 -14.15318 -13.99819 -13.91529 -13.48755 -13.34560 -12.99632 -12.76762 -12.75953 -12.53234 -12.48522 -12.39413 -12.16936 -11.81337 -11.63192 -11.41793 -11.16607 -11.10336 -10.89764 -10.81446 -10.65499 -10.39266 -10.02470 -9.79852 -9.50957 -9.34545 -9.04336 -8.96107 -8.71998 -8.37303 -7.06578 -6.43666 -3.30962 1.01306 1.11054 2.53346 3.08838 3.39233 3.40158 3.48399 3.60609 3.83604 4.27564 4.29833 4.47737 4.57589 4.57740 4.64852 4.67349 4.75513 4.82257 4.89869 4.98465 5.07583 5.15555 5.26324 5.27384 5.36588 5.38111 5.44070 5.46521 5.47031 5.62639 5.68989 5.80427 5.85221 5.86370 5.88882 5.97843 6.23156 6.24525 6.34942 6.42008 6.43403 6.56589 6.62142 6.73252 6.76888 7.59152 7.77954 7.82069 8.30753 8.33578 8.94240 9.52140 10.24040 10.99011 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.002324 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.535955 B =12045.218277 C =12098.334119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.085 4.085 9 H 0.129 0.871 10 C -0.144 4.144 11 C -0.175 4.175 12 H 0.124 0.876 13 C 0.543 3.457 14 O -0.536 6.536 15 N -0.711 5.711 16 C 0.142 3.858 17 H 0.104 0.896 18 C 0.123 3.877 19 N -0.596 5.596 20 C -0.343 4.343 21 H 0.071 0.929 22 C 0.002 3.998 23 N -0.896 5.896 24 Si 1.035 2.965 25 H -0.281 1.281 26 H -0.295 1.295 27 H -0.292 1.292 28 C 0.097 3.903 29 C 0.084 3.916 30 H 0.066 0.934 31 O -0.559 6.559 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.398 0.602 42 H 0.054 0.946 43 H 0.026 0.974 44 H 0.269 0.731 45 H 0.036 0.964 46 H 0.049 0.951 47 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.907 22.473 4.193 28.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.053 4.053 8 C -0.104 4.104 9 H 0.147 0.853 10 C -0.182 4.182 11 C -0.196 4.196 12 H 0.142 0.858 13 C 0.329 3.671 14 O -0.412 6.412 15 N -0.361 5.361 16 C 0.036 3.964 17 H 0.122 0.878 18 C -0.003 4.003 19 N -0.325 5.325 20 C -0.470 4.470 21 H 0.089 0.911 22 C -0.202 4.202 23 N -0.533 5.533 24 Si 0.866 3.134 25 H -0.208 1.208 26 H -0.223 1.223 27 H -0.220 1.220 28 C -0.029 4.029 29 C 0.024 3.976 30 H 0.084 0.916 31 O -0.364 6.364 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.232 0.768 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.079 0.921 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 16.305 21.686 4.034 27.430 hybrid contribution 0.354 0.637 0.239 0.767 sum 16.659 22.323 4.273 28.180 Atomic orbital electron populations 1.20892 0.90935 1.03445 1.02617 1.19782 0.96317 0.92317 0.98809 1.21037 0.94276 0.97413 1.01088 1.21132 0.94312 0.98057 1.00414 1.21090 0.99784 0.92437 1.01005 1.21061 0.93531 0.98357 1.00461 1.19006 0.92999 0.92755 1.00532 1.21093 1.00991 0.87810 1.00469 0.85273 1.23148 1.00238 0.98903 0.95861 1.22334 1.00254 1.03343 0.93690 0.85839 1.19534 0.88667 0.79219 0.79679 1.90718 1.27639 1.66730 1.56136 1.45791 1.13702 1.42121 1.34535 1.22197 0.89725 0.92884 0.91562 0.87764 1.21975 0.95925 0.87917 0.94522 1.44469 1.58333 1.30325 0.99336 1.19833 1.27567 0.95290 1.04303 0.91107 1.26068 1.00777 0.93493 0.99902 1.70842 1.01395 1.44402 1.36689 0.84298 0.77347 0.75665 0.76128 1.20764 1.22298 1.21959 1.22285 0.97914 0.93069 0.89601 1.23064 0.96964 0.89353 0.88213 0.91632 1.86519 1.86927 1.44678 1.18291 0.90975 0.91564 0.90515 0.86038 0.86191 0.86123 0.85818 0.87481 0.87447 0.76756 0.92720 0.95673 0.92068 0.94662 0.93269 0.77550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.33 36.01 0.34 -0.78 16 2 C -0.07 -0.70 5.88 -104.62 -0.62 -1.32 16 3 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 4 C -0.12 -0.95 10.05 -39.58 -0.40 -1.34 16 5 C -0.13 -0.98 10.05 -39.58 -0.40 -1.38 16 6 C -0.12 -0.99 9.30 -39.58 -0.37 -1.36 16 7 C -0.05 -0.52 5.61 -104.63 -0.59 -1.11 16 8 C -0.09 -0.90 4.65 -91.77 -0.43 -1.32 16 9 H 0.13 1.56 6.44 -51.92 -0.33 1.22 16 10 C -0.14 -1.33 9.56 -26.73 -0.26 -1.58 16 11 C -0.17 -1.86 5.82 -91.78 -0.53 -2.40 16 12 H 0.12 1.08 8.14 -51.92 -0.42 0.66 16 13 C 0.54 7.97 7.61 -10.99 -0.08 7.88 16 14 O -0.54 -10.02 16.00 5.56 0.09 -9.93 16 15 N -0.71 -10.05 5.23 -51.73 -0.27 -10.32 16 16 C 0.14 2.54 3.04 -65.78 -0.20 2.34 16 17 H 0.10 2.15 7.73 -51.93 -0.40 1.75 16 18 C 0.12 2.61 6.93 -2.53 -0.02 2.59 16 19 N -0.60 -14.77 3.06 -170.07 -0.52 -15.30 16 20 C -0.34 -9.86 10.24 -15.06 -0.15 -10.02 16 21 H 0.07 2.18 8.06 -52.48 -0.42 1.75 16 22 C 0.00 0.05 5.29 -17.43 -0.09 -0.04 16 23 N -0.90 -27.56 13.70 55.49 0.76 -26.80 16 24 Si 1.04 25.41 26.22 -169.99 -4.46 20.95 16 25 H -0.28 -6.40 6.16 56.52 0.35 -6.05 16 26 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.10 2.08 5.81 -3.06 -0.02 2.06 16 29 C 0.08 1.41 3.94 -24.89 -0.10 1.31 16 30 H 0.07 0.94 7.99 -51.92 -0.42 0.53 16 31 O -0.56 -8.48 13.39 -35.23 -0.47 -8.95 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.08 0.81 6.65 -51.93 -0.35 0.47 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.12 0.84 6.02 -52.49 -0.32 0.53 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.11 0.74 6.18 -51.93 -0.32 0.42 16 41 H 0.40 4.35 8.51 -40.82 -0.35 4.01 16 42 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.27 8.22 8.73 -40.82 -0.36 7.87 16 45 H 0.04 0.77 3.83 -51.93 -0.20 0.57 16 46 H 0.05 1.11 8.06 -51.92 -0.42 0.69 16 47 H 0.38 3.97 9.12 45.56 0.42 4.39 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -34.83 381.11 -9.54 -44.37 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.11 Total: 8.10 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -4.29 Total: -7.87 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.03 Total: -52.41 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.38 Total: -18.88 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.46 Total: 20.95 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.83 -9.54 -44.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077819972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.319 kcal (2) G-P(sol) polarization free energy of solvation -34.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds