Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 120.00046 * 2 1 4 4 C 1.38207 * 119.99528 * 180.22993 * 3 2 1 5 5 C 1.38261 * 120.00408 * 359.80598 * 4 3 2 6 6 C 1.38213 * 119.99714 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99741 * 179.78353 * 2 1 3 8 8 C 1.50698 * 120.00301 * 359.97438 * 7 2 1 9 9 H 1.09008 * 115.54988 * 334.05803 * 8 7 2 10 10 C 1.53000 * 117.50332 * 188.34778 * 8 7 2 11 11 C 1.52996 * 60.00020 * 252.50983 * 10 8 7 12 12 H 1.09009 * 117.51646 * 107.47926 * 11 10 8 13 13 C 1.50695 * 117.50157 * 252.50454 * 11 10 8 14 14 O 1.21281 * 119.99947 * 68.62468 * 13 11 10 15 15 N 1.34781 * 120.00334 * 248.62687 * 13 11 10 16 16 C 1.46496 * 119.99893 * 180.02562 * 15 13 11 17 17 H 1.09000 * 110.88894 * 37.42098 * 16 15 13 18 18 C 1.54916 * 111.00353 * 273.54268 * 16 15 13 19 19 N 1.47419 * 104.83244 * 204.92140 * 18 16 15 20 20 C 1.36937 * 125.64640 * 204.08890 * 19 18 16 21 21 H 1.08009 * 119.99926 * 26.01384 * 20 19 18 22 22 C 1.38810 * 120.00463 * 206.00924 * 20 19 18 23 23 N 1.31612 * 120.00341 * 214.75296 * 22 20 19 24 24 Si 1.86806 * 119.99437 * 34.47912 * 22 20 19 25 25 H 1.48498 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47211 * 120.00081 * 24 22 20 27 27 H 1.48504 * 109.47130 * 239.99986 * 24 22 20 28 28 C 1.47021 * 108.70513 * 24.35439 * 19 18 16 29 29 C 1.54326 * 107.26601 * 358.58463 * 28 19 18 30 30 H 1.09010 * 110.66768 * 96.52412 * 29 28 19 31 31 O 1.42893 * 110.85383 * 219.67181 * 29 28 19 32 32 H 1.08996 * 109.47157 * 270.21743 * 1 2 3 33 33 H 1.09001 * 109.46594 * 30.21515 * 1 2 3 34 34 H 1.08998 * 109.47217 * 150.20997 * 1 2 3 35 35 H 1.07995 * 119.99789 * 0.05566 * 3 2 1 36 36 H 1.08003 * 119.99865 * 179.82916 * 4 3 2 37 37 H 1.08001 * 120.00176 * 179.97438 * 5 4 3 38 38 H 1.08001 * 119.99941 * 180.02562 * 6 5 4 39 39 H 1.09000 * 117.49720 * 145.01682 * 10 8 7 40 40 H 1.08999 * 117.49768 * 0.02562 * 10 8 7 41 41 H 0.97001 * 119.99622 * 359.97438 * 15 13 11 42 42 H 1.08999 * 110.36759 * 86.07255 * 18 16 15 43 43 H 1.09002 * 110.36470 * 323.75793 * 18 16 15 44 44 H 0.96999 * 120.00358 * 4.81834 * 23 22 20 45 45 H 1.08999 * 109.87952 * 118.13563 * 28 19 18 46 46 H 1.09007 * 109.88147 * 239.29643 * 28 19 18 47 47 H 0.96696 * 114.00227 * 293.69350 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0001 -0.0056 6 6 3.5806 -1.1970 -0.0010 7 6 2.1980 -1.1970 0.0045 8 6 1.4446 -2.5020 0.0100 9 1 0.4437 -2.4653 0.4405 10 6 2.2542 -3.7845 0.2119 11 6 1.6736 -3.4550 -1.1648 12 1 2.3691 -3.1379 -1.9419 13 6 0.4986 -4.2714 -1.6380 14 8 -0.5778 -4.1586 -1.0908 15 7 0.6440 -5.1270 -2.6692 16 6 -0.4985 -5.9201 -3.1295 17 1 -1.4199 -5.3399 -3.0792 18 6 -0.6248 -7.2341 -2.3188 19 7 -1.3411 -8.1618 -3.2130 20 6 -2.0803 -9.2435 -2.8145 21 1 -2.5290 -9.2585 -1.8321 22 6 -2.2531 -10.3205 -3.6729 23 7 -3.3873 -10.9881 -3.6712 24 14 -0.8783 -10.8177 -4.8359 25 1 0.2816 -9.9098 -4.6479 26 1 -0.4661 -12.2147 -4.5466 27 1 -1.3579 -10.7234 -6.2382 28 6 -1.1250 -7.7372 -4.6039 29 6 -0.2583 -6.4609 -4.5638 30 1 0.7935 -6.7053 -4.7127 31 8 -0.6990 -5.5159 -5.5408 32 1 -0.3633 0.0039 1.0276 33 1 -0.3632 0.8881 -0.5172 34 1 -0.3633 -0.8918 -0.5106 35 1 1.6583 2.1326 0.0009 36 1 4.1205 2.1326 -0.0076 37 1 5.3517 -0.0002 -0.0097 38 1 4.1205 -2.1324 -0.0011 39 1 1.7862 -4.5916 0.7755 40 1 3.3318 -3.6842 0.3411 41 1 1.5049 -5.2169 -3.1070 42 1 -1.1999 -7.0645 -1.4085 43 1 0.3627 -7.6270 -2.0768 44 1 -4.1272 -10.6858 -3.1216 45 1 -0.6072 -8.5223 -5.1549 46 1 -2.0821 -7.5184 -5.0776 47 1 -0.5710 -5.8059 -6.4543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077819972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = -32.580102 kcal Electronic energy + Delta-G solvation = -27706.827821 eV Core-core repulsion = 23854.843271 eV Total energy + Delta-G solvation = -3851.984551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52210 -40.54986 -39.59206 -37.31831 -36.81593 -35.63498 -34.08787 -33.71805 -31.56448 -30.47258 -29.27134 -27.81036 -26.38461 -25.00636 -24.68482 -22.60020 -22.31360 -21.99857 -21.47242 -20.86800 -19.73217 -18.77155 -18.27201 -17.76469 -17.32198 -16.60502 -16.44622 -16.10906 -15.98646 -15.73033 -15.50584 -15.16009 -14.92473 -14.69194 -14.63321 -14.45243 -14.33641 -13.94578 -13.62234 -13.37640 -13.30617 -13.18832 -13.06487 -12.95388 -12.82645 -12.71379 -12.08168 -12.02028 -11.87669 -11.71456 -11.61180 -11.42588 -11.26064 -11.18875 -10.90268 -10.63150 -10.23009 -9.65174 -9.38103 -9.16166 -8.72554 -5.56035 0.37789 0.50588 1.42536 1.42868 1.53332 1.71621 1.94498 2.53287 2.66313 2.83789 3.00314 3.07259 3.38241 3.46680 3.62512 3.70529 3.81019 3.87897 3.93313 3.98721 4.02151 4.12900 4.20974 4.27478 4.27590 4.41014 4.45117 4.65881 4.70246 4.73814 4.74423 4.78538 4.79653 4.91867 4.95135 4.95922 4.98083 5.12524 5.19427 5.30285 5.36613 5.62284 5.64910 5.65428 5.77564 6.07058 6.14624 6.48796 6.72542 6.81437 7.19267 7.38616 8.08984 8.67730 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.002324 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.535955 B =12045.218277 C =12098.334119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.067 4.067 8 C -0.091 4.091 9 H 0.102 0.898 10 C -0.127 4.127 11 C -0.171 4.171 12 H 0.153 0.847 13 C 0.538 3.462 14 O -0.585 6.585 15 N -0.696 5.696 16 C 0.153 3.847 17 H 0.070 0.930 18 C 0.125 3.875 19 N -0.616 5.616 20 C -0.347 4.347 21 H 0.026 0.974 22 C -0.052 4.052 23 N -0.929 5.929 24 Si 1.089 2.911 25 H -0.246 1.246 26 H -0.294 1.294 27 H -0.279 1.279 28 C 0.088 3.912 29 C 0.107 3.893 30 H 0.111 0.889 31 O -0.565 6.565 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.094 0.906 40 H 0.141 0.859 41 H 0.420 0.580 42 H 0.021 0.979 43 H 0.045 0.955 44 H 0.253 0.747 45 H 0.046 0.954 46 H 0.028 0.972 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.783 24.141 2.458 32.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.146 4.146 6 C -0.137 4.137 7 C -0.067 4.067 8 C -0.110 4.110 9 H 0.120 0.880 10 C -0.164 4.164 11 C -0.192 4.192 12 H 0.171 0.829 13 C 0.326 3.674 14 O -0.465 6.465 15 N -0.347 5.347 16 C 0.046 3.954 17 H 0.088 0.912 18 C -0.001 4.001 19 N -0.345 5.345 20 C -0.475 4.475 21 H 0.044 0.956 22 C -0.249 4.249 23 N -0.568 5.568 24 Si 0.912 3.088 25 H -0.171 1.171 26 H -0.221 1.221 27 H -0.205 1.205 28 C -0.037 4.037 29 C 0.047 3.953 30 H 0.128 0.872 31 O -0.373 6.373 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.113 0.887 40 H 0.159 0.841 41 H 0.258 0.742 42 H 0.040 0.960 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 21.231 23.391 2.273 31.671 hybrid contribution -1.282 0.218 0.893 1.577 sum 19.950 23.609 3.166 31.071 Atomic orbital electron populations 1.20834 0.91417 1.02753 1.02533 1.19944 0.96324 0.93163 0.99966 1.21260 0.95017 0.97455 1.00982 1.21474 0.94076 0.99288 0.99406 1.21442 1.01115 0.92056 0.99947 1.21297 0.92816 0.99670 0.99912 1.19030 0.93792 0.92074 1.01818 1.20974 1.00393 0.89095 1.00506 0.87970 1.23267 1.01757 0.97427 0.93958 1.22303 0.99029 1.02982 0.94884 0.82925 1.20317 0.89194 0.78962 0.78926 1.90708 1.30030 1.68165 1.57634 1.45570 1.13520 1.41191 1.34456 1.21687 0.90111 0.91086 0.92501 0.91230 1.21985 0.95641 0.89058 0.93417 1.44468 1.58689 1.29644 1.01728 1.19625 1.27802 0.97276 1.02827 0.95641 1.27460 1.01932 0.93401 1.02140 1.70977 1.02071 1.45687 1.38020 0.83622 0.74948 0.75863 0.74370 1.17064 1.22146 1.20546 1.22516 0.98186 0.95767 0.87265 1.22827 0.98058 0.86853 0.87529 0.87181 1.86490 1.87083 1.43959 1.19786 0.90876 0.90554 0.92772 0.84773 0.83990 0.83687 0.83845 0.88709 0.84143 0.74194 0.96007 0.93703 0.93848 0.93614 0.95358 0.74760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 9.33 71.24 0.66 -1.59 16 2 C -0.09 -1.77 5.88 -19.86 -0.12 -1.89 16 3 C -0.13 -1.99 9.70 22.27 0.22 -1.78 16 4 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 5 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 6 C -0.12 -1.66 9.30 22.27 0.21 -1.45 16 7 C -0.07 -1.23 5.61 -19.87 -0.11 -1.34 16 8 C -0.09 -1.87 4.65 -11.54 -0.05 -1.92 16 9 H 0.10 2.65 6.44 -2.38 -0.02 2.63 16 10 C -0.13 -2.07 9.56 30.59 0.29 -1.78 16 11 C -0.17 -3.31 5.82 -11.54 -0.07 -3.38 16 12 H 0.15 2.08 8.14 -2.38 -0.02 2.06 16 13 C 0.54 15.51 7.61 87.65 0.67 16.17 16 14 O -0.59 -22.96 16.00 -3.03 -0.05 -23.01 16 15 N -0.70 -18.23 5.23 -435.96 -2.28 -20.51 16 16 C 0.15 5.37 3.04 46.39 0.14 5.51 16 17 H 0.07 2.96 7.73 -2.39 -0.02 2.94 16 18 C 0.13 5.36 6.93 86.86 0.60 5.96 16 19 N -0.62 -30.89 3.06 -691.97 -2.12 -33.01 16 20 C -0.35 -20.80 10.24 84.03 0.86 -19.94 16 21 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 22 C -0.05 -3.06 5.29 84.86 0.45 -2.61 16 23 N -0.93 -59.26 13.70 21.65 0.30 -58.96 16 24 Si 1.09 50.41 26.22 68.60 1.80 52.21 16 25 H -0.25 -9.91 6.16 99.48 0.61 -9.30 16 26 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 28 C 0.09 3.62 5.81 86.73 0.50 4.12 16 29 C 0.11 3.25 3.94 31.78 0.13 3.37 16 30 H 0.11 2.48 7.99 -2.38 -0.02 2.46 16 31 O -0.56 -15.24 13.39 -148.98 -2.00 -17.23 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 34 H 0.05 1.25 6.65 -2.39 -0.02 1.24 16 35 H 0.13 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.14 1.32 6.02 -2.91 -0.02 1.30 16 39 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.14 1.35 6.18 -2.39 -0.01 1.34 16 41 H 0.42 7.42 8.51 -92.71 -0.79 6.63 16 42 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.25 16.40 8.73 -92.71 -0.81 15.59 16 45 H 0.05 1.81 3.83 -2.39 -0.01 1.81 16 46 H 0.03 1.27 8.06 -2.38 -0.02 1.25 16 47 H 0.40 6.72 9.12 -74.06 -0.68 6.05 16 Total: -1.00 -81.70 381.11 -0.11 -81.81 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.59 Total: 23.95 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 4.83 Total: -5.24 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -4.10 Total: -112.48 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -2.04 Total: -40.24 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 1.80 Total: 52.21 kcal Total: -81.70 -0.11 -81.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077819972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.230 kcal (2) G-P(sol) polarization free energy of solvation -81.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds