Wall clock time and date at job start Tue Mar 31 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99854 * 2 1 4 4 H 1.48510 * 109.46829 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47325 * 300.00093 * 3 2 1 6 6 H 1.48508 * 109.47062 * 60.00225 * 3 2 1 7 7 C 1.38813 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99805 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00068 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64510 * 0.03966 * 9 7 2 11 11 C 1.55121 * 104.93857 * 203.96564 * 10 9 7 12 12 H 1.09004 * 110.93609 * 81.21934 * 11 10 9 13 13 O 1.42901 * 111.16369 * 205.12951 * 11 10 9 14 14 C 1.55152 * 101.48846 * 323.22472 * 11 10 9 15 15 H 1.09002 * 110.72354 * 276.82745 * 14 11 10 16 16 N 1.46504 * 110.72258 * 153.73231 * 14 11 10 17 17 C 1.34772 * 120.00603 * 157.43965 * 16 14 11 18 18 O 1.21557 * 119.99156 * 0.02562 * 17 16 14 19 19 C 1.47836 * 120.00624 * 180.02562 * 17 16 14 20 20 C 1.39614 * 120.26930 * 359.97438 * 19 17 16 21 21 C 1.37628 * 119.61792 * 180.12355 * 20 19 17 22 22 C 1.39078 * 120.75829 * 359.96391 * 21 20 19 23 23 C 1.37783 * 119.91515 * 359.89663 * 22 21 20 24 24 C 1.38701 * 119.81988 * 0.18127 * 23 22 21 25 25 C 1.50659 * 122.59604 * 180.34336 * 23 22 21 26 26 C 1.52724 * 110.56888 * 342.39644 * 25 23 22 27 27 C 1.53328 * 108.35804 * 51.11396 * 26 25 23 28 28 C 1.50683 * 117.60118 * 179.80247 * 22 21 20 29 29 C 1.47016 * 125.64784 * 179.97438 * 9 7 2 30 30 H 0.96998 * 119.99761 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36998 * 322.93042 * 10 9 7 32 32 H 1.09004 * 110.36865 * 85.14890 * 10 9 7 33 33 H 0.96700 * 114.00249 * 292.17937 * 13 11 10 34 34 H 0.97001 * 119.99335 * 337.44198 * 16 14 11 35 35 H 1.07999 * 120.18934 * 0.15140 * 20 19 17 36 36 H 1.07996 * 119.61579 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.79032 * 179.85311 * 24 23 22 38 38 H 1.09002 * 109.25140 * 222.12523 * 25 23 22 39 39 H 1.09004 * 109.25225 * 102.66531 * 25 23 22 40 40 H 1.09002 * 109.68876 * 170.83292 * 26 25 23 41 41 H 1.09002 * 109.68730 * 291.39811 * 26 25 23 42 42 H 1.09001 * 109.68634 * 49.72905 * 27 26 25 43 43 H 1.09002 * 109.68236 * 170.28548 * 27 26 25 44 44 H 1.08995 * 109.25225 * 42.19545 * 28 22 21 45 45 H 1.09008 * 109.21883 * 282.75846 * 28 22 21 46 46 H 1.09004 * 109.88235 * 59.55572 * 29 9 7 47 47 H 1.08997 * 109.88522 * 298.39734 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1416 -2.5331 -0.0031 11 6 -0.4054 -3.9356 0.6050 12 1 -0.3597 -3.9030 1.6936 13 8 -1.6579 -4.4624 0.1626 14 6 0.7783 -4.7524 0.0229 15 1 0.5489 -5.0996 -0.9845 16 7 1.1076 -5.8819 0.8959 17 6 1.7580 -6.9519 0.3973 18 8 2.0717 -6.9794 -0.7768 19 6 2.0898 -8.0919 1.2781 20 6 1.7326 -8.0659 2.6275 21 6 2.0505 -9.1334 3.4359 22 6 2.7227 -10.2380 2.9239 23 6 3.0755 -10.2713 1.5924 24 6 2.7617 -9.2003 0.7688 25 6 3.7975 -11.4396 0.9730 26 6 4.4375 -12.3088 2.0535 27 6 3.3691 -12.6407 3.1020 28 6 3.0389 -11.3646 3.8733 29 6 1.9317 -3.7275 -0.0028 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5999 -1.7592 0.6127 32 1 -0.5266 -2.4841 -1.0217 33 1 -2.4273 -3.9841 0.5008 34 1 0.8575 -5.8596 1.8328 35 1 1.2095 -7.2132 3.0345 36 1 1.7745 -9.1130 4.4799 37 1 3.0406 -9.2258 -0.2743 38 1 4.5737 -11.0685 0.3037 39 1 3.0879 -12.0393 0.4029 40 1 4.8140 -13.2299 1.6085 41 1 5.2573 -11.7658 2.5237 42 1 2.4722 -13.0131 2.6071 43 1 3.7508 -13.3963 3.7886 44 1 2.1772 -11.5458 4.5157 45 1 3.8939 -11.0855 4.4892 46 1 2.5578 -3.8518 0.8808 47 1 2.5287 -3.8634 -0.9046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078126733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:52 Heat of formation + Delta-G solvation = -68.272672 kcal Electronic energy + Delta-G solvation = -27772.847209 eV Core-core repulsion = 23919.314913 eV Total energy + Delta-G solvation = -3853.532297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59231 -40.52872 -39.32494 -36.83328 -36.72267 -35.68731 -33.71404 -33.52323 -31.59002 -30.13520 -29.81861 -28.73792 -26.56353 -25.00782 -24.12629 -23.21242 -22.57531 -22.06044 -21.66882 -20.22566 -19.18006 -18.59669 -18.39060 -17.41953 -16.86237 -16.72988 -16.23493 -16.14177 -15.94052 -15.56905 -15.38514 -15.10255 -14.85590 -14.70753 -14.64498 -14.38004 -14.07185 -13.85662 -13.73427 -13.46248 -13.24639 -13.16575 -13.08073 -12.85697 -12.76815 -12.44258 -12.33999 -12.04537 -11.96542 -11.72726 -11.51145 -11.48061 -11.31663 -11.17180 -10.87932 -10.79592 -10.31387 -9.78852 -9.56350 -9.00492 -7.84438 -5.31071 -0.17934 0.36316 1.46199 1.47515 1.57925 1.76050 1.95534 2.45036 2.80448 3.03645 3.27108 3.51769 3.58986 3.66505 3.77572 3.86290 3.96777 4.00877 4.07185 4.14000 4.17564 4.22858 4.26603 4.38145 4.52725 4.55485 4.64568 4.67483 4.78871 4.84167 4.90067 4.92659 5.00815 5.04484 5.11026 5.17886 5.28483 5.31460 5.34828 5.38973 5.41652 5.45690 5.49240 5.63613 5.65278 5.95631 6.18412 6.43148 6.84607 7.02327 7.09982 7.65686 8.28175 9.17651 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022988 B = 0.002315 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.750762 B =12091.813036 C =12407.466684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.062 4.062 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.284 1.284 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.618 5.618 10 C 0.134 3.866 11 C 0.093 3.907 12 H 0.090 0.910 13 O -0.568 6.568 14 C 0.155 3.845 15 H 0.076 0.924 16 N -0.696 5.696 17 C 0.555 3.445 18 O -0.584 6.584 19 C -0.153 4.153 20 C -0.088 4.088 21 C -0.125 4.125 22 C -0.052 4.052 23 C -0.092 4.092 24 C -0.077 4.077 25 C -0.084 4.084 26 C -0.118 4.118 27 C -0.120 4.120 28 C -0.083 4.083 29 C 0.132 3.868 30 H 0.251 0.749 31 H 0.094 0.906 32 H -0.009 1.009 33 H 0.398 0.602 34 H 0.414 0.586 35 H 0.145 0.855 36 H 0.159 0.841 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.041 0.959 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 -25.702 12.824 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.254 4.254 3 Si 0.812 3.188 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.346 5.346 10 C 0.008 3.992 11 C 0.032 3.968 12 H 0.108 0.892 13 O -0.375 6.375 14 C 0.049 3.951 15 H 0.094 0.906 16 N -0.348 5.348 17 C 0.344 3.656 18 O -0.465 6.465 19 C -0.156 4.156 20 C -0.106 4.106 21 C -0.143 4.143 22 C -0.052 4.052 23 C -0.092 4.092 24 C -0.096 4.096 25 C -0.120 4.120 26 C -0.155 4.155 27 C -0.157 4.157 28 C -0.120 4.120 29 C 0.005 3.995 30 H 0.061 0.939 31 H 0.111 0.889 32 H 0.009 0.991 33 H 0.249 0.751 34 H 0.253 0.747 35 H 0.163 0.837 36 H 0.176 0.824 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 3.835 -25.922 11.697 28.696 hybrid contribution -0.181 1.909 -0.253 1.934 sum 3.655 -24.012 11.444 26.850 Atomic orbital electron populations 1.69956 1.06101 1.25393 1.58092 1.25650 0.96775 1.00954 1.02051 0.84923 0.77941 0.78927 0.76960 1.19400 1.21945 1.21074 1.19473 0.91039 0.83328 1.43385 0.90188 1.44550 1.02439 1.00497 1.87120 1.22416 0.84553 0.94586 0.97653 1.23278 0.83223 0.92479 0.97839 0.89209 1.86393 1.15712 1.58797 1.76617 1.21576 0.93434 0.85334 0.94788 0.90632 1.45658 1.58407 1.16865 1.13837 1.18842 0.76723 0.82784 0.87229 1.90739 1.55156 1.81698 1.18941 1.19719 1.05748 0.95124 0.95027 1.21453 0.98007 0.99734 0.91432 1.21460 0.98993 0.92586 1.01240 1.20254 0.95136 0.96390 0.93463 1.19827 0.99958 0.95919 0.93508 1.21343 0.95833 0.92284 1.00116 1.20552 0.99128 0.93879 0.98490 1.21565 0.98120 0.99713 0.96144 1.21580 0.99073 0.96993 0.98103 1.20644 1.03232 0.91858 0.96274 1.21661 0.94615 0.84800 0.98421 0.93896 0.88850 0.99095 0.75142 0.74724 0.83716 0.82353 0.86456 0.90842 0.90094 0.90006 0.91656 0.91826 0.89525 0.88791 0.89120 0.94107 0.96844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.04 10.09 21.65 0.22 -54.82 16 2 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 3 Si 0.98 45.36 29.55 68.60 2.03 47.39 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.24 -13.85 10.27 84.03 0.86 -12.98 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 9 N -0.62 -32.73 3.40 -691.57 -2.35 -35.08 16 10 C 0.13 6.57 5.63 86.93 0.49 7.06 16 11 C 0.09 3.45 4.06 32.06 0.13 3.58 16 12 H 0.09 2.90 8.00 -2.38 -0.02 2.88 16 13 O -0.57 -19.03 13.48 -148.98 -2.01 -21.04 16 14 C 0.15 6.13 3.00 46.18 0.14 6.27 16 15 H 0.08 3.42 7.62 -2.39 -0.02 3.40 16 16 N -0.70 -22.17 5.07 -439.79 -2.23 -24.40 16 17 C 0.55 19.15 7.78 86.78 0.67 19.82 16 18 O -0.58 -25.23 16.03 -3.90 -0.06 -25.29 16 19 C -0.15 -4.14 5.87 -20.16 -0.12 -4.26 16 20 C -0.09 -1.73 9.54 22.46 0.21 -1.52 16 21 C -0.13 -1.93 9.59 22.33 0.21 -1.72 16 22 C -0.05 -0.83 5.75 -19.78 -0.11 -0.94 16 23 C -0.09 -1.80 5.73 -19.87 -0.11 -1.91 16 24 C -0.08 -1.98 9.16 22.63 0.21 -1.77 16 25 C -0.08 -1.24 5.66 29.74 0.17 -1.07 16 26 C -0.12 -1.20 5.98 30.61 0.18 -1.02 16 27 C -0.12 -1.01 5.98 30.61 0.18 -0.83 16 28 C -0.08 -0.78 5.66 29.75 0.17 -0.61 16 29 C 0.13 6.02 7.00 86.73 0.61 6.63 16 30 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.09 4.97 5.87 -2.39 -0.01 4.96 16 32 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 33 H 0.40 9.72 9.12 -74.06 -0.68 9.05 16 34 H 0.41 10.14 6.59 -92.71 -0.61 9.53 16 35 H 0.15 2.21 6.43 -2.91 -0.02 2.19 16 36 H 0.16 1.43 8.05 -2.91 -0.02 1.40 16 37 H 0.12 3.31 7.63 -2.91 -0.02 3.29 16 38 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 42 H 0.06 0.60 8.10 -2.39 -0.02 0.58 16 43 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.09 0.61 8.12 -2.39 -0.02 0.59 16 45 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.04 1.78 8.03 -2.38 -0.02 1.76 16 47 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -75.19 375.86 -0.33 -75.51 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.29 Total: 25.99 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 4.36 Total: 11.74 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -4.36 Total: -114.30 kcal Atomic # 8 Polarization: -44.26 SS G_CDS: -2.07 Total: -46.33 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -75.19 -0.33 -75.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078126733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.241 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds