Wall clock time and date at job start Tue Mar 31 2020 05:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00183 * 2 1 4 4 H 1.48505 * 109.47121 * 269.99967 * 3 2 1 5 5 H 1.48496 * 109.47194 * 30.00258 * 3 2 1 6 6 H 1.48502 * 109.46906 * 150.00498 * 3 2 1 7 7 C 1.38821 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99624 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00135 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64768 * 359.97438 * 9 7 2 11 11 C 1.54323 * 107.27413 * 178.98734 * 10 9 7 12 12 H 1.08998 * 110.71787 * 96.16605 * 11 10 9 13 13 O 1.42894 * 110.87238 * 219.37386 * 11 10 9 14 14 C 1.55157 * 102.93832 * 337.80743 * 11 10 9 15 15 H 1.09001 * 111.00338 * 277.38796 * 14 11 10 16 16 N 1.46496 * 111.00699 * 153.57737 * 14 11 10 17 17 C 1.34771 * 120.00467 * 154.99650 * 16 14 11 18 18 O 1.21285 * 120.00014 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00316 * 180.02562 * 17 16 14 20 20 C 1.50696 * 109.47509 * 180.02562 * 19 17 16 21 21 C 1.38256 * 120.03393 * 269.97567 * 20 19 17 22 22 C 1.38104 * 119.93972 * 180.02562 * 21 20 19 23 23 C 1.38495 * 120.21460 * 359.93800 * 22 21 20 24 24 C 1.38216 * 119.84738 * 0.06836 * 23 22 21 25 25 C 1.38104 * 120.03865 * 89.99234 * 20 19 17 26 26 C 1.51680 * 109.83982 * 180.12950 * 24 23 22 27 27 C 1.54346 * 105.01917 * 16.92278 * 26 24 23 28 28 C 1.51367 * 130.39473 * 180.02562 * 23 22 21 29 29 C 1.47422 * 125.65009 * 180.02562 * 9 7 2 30 30 H 0.96999 * 119.99568 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.88494 * 59.56669 * 10 9 7 32 32 H 1.09000 * 109.88205 * 298.40632 * 10 9 7 33 33 H 0.96703 * 114.00253 * 293.60253 * 13 11 10 34 34 H 0.97003 * 119.99571 * 334.99666 * 16 14 11 35 35 H 1.08998 * 109.47370 * 59.99431 * 19 17 16 36 36 H 1.09002 * 109.47050 * 299.99802 * 19 17 16 37 37 H 1.08001 * 120.02982 * 0.04298 * 21 20 19 38 38 H 1.07995 * 119.89182 * 180.02562 * 22 21 20 39 39 H 1.08004 * 119.89079 * 359.97438 * 25 20 19 40 40 H 1.08998 * 110.25544 * 258.10835 * 26 24 23 41 41 H 1.09000 * 110.49386 * 135.85647 * 26 24 23 42 42 H 1.09002 * 110.82237 * 215.56929 * 27 26 24 43 43 H 1.09005 * 110.81964 * 92.21763 * 27 26 24 44 44 H 1.08994 * 110.30444 * 43.92091 * 28 23 22 45 45 H 1.09000 * 110.30530 * 281.77217 * 28 23 22 46 46 H 1.08997 * 110.36726 * 85.24001 * 29 9 7 47 47 H 1.08997 * 110.36724 * 322.91957 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2023 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0005 11 6 -0.4486 -4.0441 -0.0259 12 1 -0.6310 -4.4180 0.9815 13 8 -1.5643 -4.3195 -0.8752 14 6 0.8514 -4.6562 -0.6115 15 1 0.8552 -4.5970 -1.6999 16 7 1.0289 -6.0395 -0.1631 17 6 1.7585 -6.8989 -0.9016 18 8 2.2678 -6.5273 -1.9377 19 6 1.9406 -8.3221 -0.4405 20 6 2.7909 -9.0679 -1.4364 21 6 2.1967 -9.7313 -2.4939 22 6 2.9778 -10.4146 -3.4052 23 6 4.3554 -10.4368 -3.2641 24 6 4.9493 -9.7737 -2.2068 25 6 4.1643 -9.0898 -1.2935 26 6 6.4552 -9.9431 -2.2736 27 6 6.7412 -10.4136 -3.7155 28 6 5.4178 -11.1014 -4.1131 29 6 1.9334 -3.7312 -0.0005 30 1 -0.4849 0.8401 0.0004 31 1 -0.5582 -2.0522 -0.8827 32 1 -0.5537 -2.0844 0.9027 33 1 -2.4018 -3.9583 -0.5539 34 1 0.6212 -6.3368 0.6654 35 1 0.9669 -8.8052 -0.3596 36 1 2.4314 -8.3287 0.5327 37 1 1.1228 -9.7149 -2.6075 38 1 2.5129 -10.9322 -4.2312 39 1 4.6278 -8.5712 -0.4672 40 1 6.7821 -10.6972 -1.5577 41 1 6.9549 -8.9941 -2.0792 42 1 7.5679 -11.1238 -3.7345 43 1 6.9474 -9.5640 -4.3665 44 1 5.2114 -10.9411 -5.1712 45 1 5.4649 -12.1680 -3.8935 46 1 2.1670 -4.0419 1.0178 47 1 2.8325 -3.7407 -0.6166 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078166279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:17 Heat of formation + Delta-G solvation = -64.335748 kcal Electronic energy + Delta-G solvation = -27621.331481 eV Core-core repulsion = 23767.969902 eV Total energy + Delta-G solvation = -3853.361579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.35863 -40.66105 -39.38215 -36.85388 -36.68179 -35.51994 -33.71299 -32.94031 -31.53638 -30.20413 -29.04011 -28.51333 -27.22401 -26.12412 -23.53742 -22.58173 -22.14195 -21.70027 -21.66319 -20.78503 -19.10973 -18.44419 -17.84976 -17.42041 -17.04424 -16.82873 -16.48558 -16.16548 -15.89096 -15.71820 -15.59797 -15.17667 -14.69111 -14.48267 -14.28158 -14.11739 -13.89674 -13.77479 -13.69098 -13.42235 -13.25182 -13.17844 -12.81829 -12.75671 -12.72866 -12.47116 -12.14225 -12.09015 -12.03922 -11.90451 -11.74533 -11.58264 -11.54466 -11.13921 -10.81888 -10.78034 -10.13658 -9.64875 -9.27354 -8.98891 -7.90775 -5.28098 0.39479 0.51255 1.44015 1.46592 1.54951 1.67127 2.11019 2.46420 2.85858 3.12431 3.30122 3.47625 3.55106 3.67654 3.76516 3.84597 4.03184 4.06053 4.13157 4.16486 4.17746 4.23370 4.34893 4.44468 4.53802 4.57060 4.60388 4.64374 4.75691 4.80142 4.82056 4.93004 4.94515 5.02361 5.07430 5.24974 5.30922 5.34652 5.34886 5.42420 5.48197 5.52404 5.64494 5.67221 5.74108 6.11731 6.13896 6.59945 6.86480 7.02852 7.31620 7.67314 8.29709 9.18947 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.002449 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.073027 B =11430.092237 C =12596.408435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.062 4.062 3 Si 0.981 3.019 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.080 0.920 9 N -0.623 5.623 10 C 0.161 3.839 11 C 0.091 3.909 12 H 0.098 0.902 13 O -0.570 6.570 14 C 0.153 3.847 15 H 0.066 0.934 16 N -0.701 5.701 17 C 0.511 3.489 18 O -0.583 6.583 19 C -0.089 4.089 20 C -0.079 4.079 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.111 4.111 26 C -0.083 4.083 27 C -0.119 4.119 28 C -0.080 4.080 29 C 0.131 3.869 30 H 0.250 0.750 31 H 0.018 0.982 32 H 0.027 0.973 33 H 0.396 0.604 34 H 0.419 0.581 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.046 0.954 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -26.111 0.163 26.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.255 4.255 3 Si 0.809 3.191 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.193 1.193 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.035 3.965 11 C 0.031 3.969 12 H 0.115 0.885 13 O -0.377 6.377 14 C 0.046 3.954 15 H 0.084 0.916 16 N -0.354 5.354 17 C 0.299 3.701 18 O -0.462 6.462 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.129 4.129 26 C -0.120 4.120 27 C -0.156 4.156 28 C -0.117 4.117 29 C 0.005 3.995 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.246 0.754 34 H 0.257 0.743 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.112 0.888 46 H 0.063 0.937 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.027 -25.950 -0.908 26.656 hybrid contribution -0.495 1.790 0.466 1.915 sum 5.532 -24.160 -0.442 24.789 Atomic orbital electron populations 1.70132 1.06163 1.25569 1.57815 1.25671 0.96766 1.01016 1.02096 0.85046 0.77772 0.78875 0.77430 1.21558 1.21468 1.19270 1.19441 0.90989 0.83518 1.43763 0.90172 1.44527 1.02323 1.00845 1.87373 1.21629 0.84269 0.91549 0.99065 1.23164 0.85749 0.94361 0.93627 0.88467 1.86437 1.19445 1.79648 1.52188 1.21677 0.93773 0.81260 0.98696 0.91560 1.45687 1.53404 1.09370 1.26932 1.21312 0.76994 0.88503 0.83269 1.90734 1.49549 1.79706 1.26206 1.20701 1.03333 0.88895 0.99841 1.19383 0.93612 0.97996 0.96944 1.21135 1.00480 0.97760 0.94384 1.20841 0.92776 1.00408 0.99805 1.20975 0.94348 0.98906 0.97307 1.20983 0.97167 0.97989 0.95557 1.20685 0.93064 0.99304 0.99877 1.21176 0.89933 1.02210 0.98657 1.22328 0.97478 1.00739 0.95065 1.21105 0.91700 1.00012 0.98867 1.21933 0.94870 0.84686 0.98035 0.94106 0.96367 0.95450 0.75384 0.74332 0.84783 0.85016 0.84937 0.84755 0.85925 0.88882 0.91018 0.88314 0.91578 0.90350 0.88816 0.93661 0.95248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.72 10.31 21.65 0.22 -56.50 16 2 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 3 Si 0.98 46.28 29.55 68.60 2.03 48.30 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.25 -14.30 10.28 84.04 0.86 -13.44 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -32.85 3.39 -692.00 -2.35 -35.20 16 10 C 0.16 7.82 5.15 86.73 0.45 8.27 16 11 C 0.09 3.25 3.97 31.78 0.13 3.38 16 12 H 0.10 2.75 8.00 -2.39 -0.02 2.73 16 13 O -0.57 -18.98 13.40 -148.98 -2.00 -20.97 16 14 C 0.15 5.76 3.15 46.38 0.15 5.90 16 15 H 0.07 3.04 7.54 -2.39 -0.02 3.03 16 16 N -0.70 -19.01 5.20 -435.98 -2.27 -21.28 16 17 C 0.51 14.79 7.82 87.66 0.69 15.47 16 18 O -0.58 -23.56 15.67 -3.04 -0.05 -23.60 16 19 C -0.09 -1.63 5.83 29.10 0.17 -1.46 16 20 C -0.08 -1.85 4.37 -19.89 -0.09 -1.94 16 21 C -0.12 -2.75 9.70 22.24 0.22 -2.53 16 22 C -0.12 -2.64 10.04 22.30 0.22 -2.41 16 23 C -0.12 -2.49 6.14 -19.60 -0.12 -2.61 16 24 C -0.12 -2.66 6.15 -19.50 -0.12 -2.78 16 25 C -0.11 -2.68 9.70 22.30 0.22 -2.46 16 26 C -0.08 -1.40 6.80 30.62 0.21 -1.19 16 27 C -0.12 -1.65 7.07 31.51 0.22 -1.43 16 28 C -0.08 -1.22 6.77 30.52 0.21 -1.01 16 29 C 0.13 5.69 6.93 86.86 0.60 6.29 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.02 1.02 7.30 -2.39 -0.02 1.01 16 32 H 0.03 1.43 7.51 -2.39 -0.02 1.41 16 33 H 0.40 9.68 9.12 -74.05 -0.68 9.01 16 34 H 0.42 7.71 8.57 -92.71 -0.79 6.91 16 35 H 0.13 1.63 8.09 -2.39 -0.02 1.62 16 36 H 0.13 1.66 8.09 -2.39 -0.02 1.64 16 37 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 39 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -80.18 383.85 -0.42 -80.60 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.48 Total: 25.72 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.47 Total: 2.93 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -4.39 Total: -112.97 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -2.04 Total: -44.58 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -80.18 -0.42 -80.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078166279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.260 kcal (2) G-P(sol) polarization free energy of solvation -80.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds