Wall clock time and date at job start Tue Mar 31 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38253 * 120.00436 * 2 1 4 4 C 1.38215 * 120.00456 * 179.97438 * 3 2 1 5 5 C 1.38256 * 119.99699 * 359.82260 * 4 3 2 6 6 C 1.38210 * 119.99896 * 0.40849 * 5 4 3 7 7 C 1.50708 * 119.99908 * 179.81591 * 6 5 4 8 8 C 1.50692 * 115.55100 * 126.26674 * 7 6 5 9 9 O 1.21290 * 120.00205 * 108.28669 * 8 7 6 10 10 N 1.34777 * 120.00434 * 288.28646 * 8 7 6 11 11 C 1.46497 * 120.00261 * 174.70608 * 10 8 7 12 12 H 1.08995 * 110.64431 * 31.85792 * 11 10 8 13 13 C 1.54339 * 111.00113 * 268.77938 * 11 10 8 14 14 N 1.47021 * 107.26376 * 219.60324 * 13 11 10 15 15 C 1.36945 * 125.64416 * 178.84730 * 14 13 11 16 16 H 1.07992 * 119.99932 * 341.74807 * 15 14 13 17 17 C 1.38815 * 119.99693 * 161.74101 * 15 14 13 18 18 N 1.31614 * 119.99749 * 158.80573 * 17 15 14 19 19 Si 1.86806 * 119.99998 * 338.80954 * 17 15 14 20 20 H 1.48501 * 109.46982 * 89.99923 * 19 17 15 21 21 H 1.48497 * 109.47035 * 329.99505 * 19 17 15 22 22 H 1.48495 * 109.46674 * 209.99916 * 19 17 15 23 23 C 1.47422 * 108.70704 * 358.58709 * 14 13 11 24 24 C 1.54916 * 104.83028 * 24.35457 * 23 14 13 25 25 H 1.09001 * 111.00031 * 81.06877 * 24 23 14 26 26 O 1.42899 * 110.99903 * 204.87981 * 24 23 14 27 27 C 1.52997 * 117.49561 * 271.93713 * 7 6 5 28 28 C 1.53004 * 117.49698 * 340.59657 * 7 6 5 29 29 C 1.38220 * 119.99868 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.46844 * 270.01988 * 1 2 3 31 31 H 1.08998 * 109.47139 * 30.01638 * 1 2 3 32 32 H 1.09002 * 109.47520 * 150.02211 * 1 2 3 33 33 H 1.08005 * 119.99966 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.00031 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.99822 * 180.23536 * 5 4 3 36 36 H 0.97007 * 119.99303 * 354.70525 * 10 8 7 37 37 H 1.08997 * 109.98804 * 100.12575 * 13 11 10 38 38 H 1.08997 * 109.77884 * 338.95827 * 13 11 10 39 39 H 0.97004 * 120.00180 * 4.96379 * 18 17 15 40 40 H 1.08998 * 110.36916 * 143.19513 * 23 14 13 41 41 H 1.09001 * 110.36348 * 265.41163 * 23 14 13 42 42 H 0.96700 * 114.00224 * 298.54238 * 26 24 23 43 43 H 1.09002 * 117.50031 * 215.00120 * 27 7 6 44 44 H 1.09000 * 117.50425 * 0.02562 * 27 7 6 45 45 H 1.08995 * 117.49993 * 359.97406 * 28 7 6 46 46 H 1.08997 * 117.49668 * 144.97322 * 28 7 6 47 47 H 1.07997 * 119.99813 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0048 6 6 3.5806 -1.1970 0.0000 7 6 4.3341 -2.5022 0.0004 8 6 3.9584 -3.4692 1.0933 9 8 3.3349 -4.4746 0.8257 10 7 4.3151 -3.2170 2.3683 11 6 3.8518 -4.0947 3.4459 12 1 3.7453 -5.1188 3.0884 13 6 2.5202 -3.5874 4.0386 14 7 2.5880 -3.7826 5.4942 15 6 1.6123 -3.4392 6.3918 16 1 0.8443 -2.7339 6.1110 17 6 1.6105 -3.9980 7.6625 18 7 0.9710 -3.3984 8.6441 19 14 2.5159 -5.6010 7.9792 20 1 3.9154 -5.3082 8.3803 21 1 2.5170 -6.4218 6.7416 22 1 1.8349 -6.3474 9.0675 23 6 3.8774 -4.4150 5.8269 24 6 4.8193 -4.0340 4.6574 25 1 5.2183 -3.0283 4.7889 26 8 5.8751 -4.9870 4.5190 27 6 4.7321 -3.0885 -1.3556 28 6 5.7976 -2.4731 -0.4449 29 6 2.1980 -1.1970 0.0005 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6583 2.1326 0.0004 34 1 4.1205 2.1326 0.0010 35 1 5.3517 -0.0001 0.0090 36 1 4.8787 -2.4542 2.5724 37 1 1.6877 -4.1575 3.6264 38 1 2.3952 -2.5285 3.8121 39 1 0.4415 -2.6055 8.4652 40 1 4.2619 -4.0206 6.7675 41 1 3.7645 -5.4974 5.8881 42 1 6.4488 -5.0538 5.2946 43 1 4.7222 -4.1737 -1.4572 44 1 4.4494 -2.5301 -2.2480 45 1 6.2153 -1.5102 -0.7386 46 1 6.4887 -3.1532 0.0530 47 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078232317.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:21 Heat of formation + Delta-G solvation = -6.784906 kcal Electronic energy + Delta-G solvation = -28724.200067 eV Core-core repulsion = 24873.334080 eV Total energy + Delta-G solvation = -3850.865987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.65458 -39.28645 -38.24984 -36.55528 -35.36738 -34.15288 -32.70330 -32.00536 -30.97117 -28.83034 -27.73587 -27.07117 -25.06996 -23.68186 -22.99418 -22.35842 -21.28744 -21.15910 -20.04546 -19.47697 -17.71708 -17.45106 -17.16695 -16.59979 -16.18085 -15.51946 -15.30355 -14.92311 -14.64665 -14.44764 -14.08798 -13.85707 -13.80288 -13.68284 -13.36294 -13.27724 -12.86134 -12.74146 -12.43229 -12.37794 -12.26815 -11.95431 -11.86605 -11.59461 -11.47646 -11.30165 -11.15238 -10.80077 -10.75400 -10.67755 -10.22453 -10.03043 -9.79183 -9.44121 -9.27029 -8.94264 -8.90031 -8.71535 -8.57603 -7.14958 -6.35918 -3.32208 1.13495 1.24517 2.59797 3.08154 3.34924 3.36554 3.50357 3.63556 3.71465 4.21125 4.26150 4.53342 4.53950 4.61821 4.68145 4.77268 4.84421 4.91793 4.97287 5.16027 5.20730 5.22764 5.31514 5.33034 5.35116 5.44536 5.47848 5.51075 5.56339 5.63051 5.69259 5.82465 5.84884 5.85114 5.91369 6.00235 6.29671 6.30922 6.33629 6.39695 6.45711 6.47681 6.57969 6.76361 6.84357 7.57993 7.64300 7.78827 8.27288 8.29876 8.96667 9.49189 10.16536 11.10089 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012765 B = 0.003752 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.886749 B = 7461.555704 C = 8810.172396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.080 4.080 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.040 4.040 7 C -0.121 4.121 8 C 0.557 3.443 9 O -0.533 6.533 10 N -0.706 5.706 11 C 0.140 3.860 12 H 0.106 0.894 13 C 0.128 3.872 14 N -0.602 5.602 15 C -0.327 4.327 16 H 0.076 0.924 17 C -0.017 4.017 18 N -0.920 5.920 19 Si 1.065 2.935 20 H -0.294 1.294 21 H -0.284 1.284 22 H -0.297 1.297 23 C 0.079 3.921 24 C 0.083 3.917 25 H 0.071 0.929 26 O -0.561 6.561 27 C -0.133 4.133 28 C -0.159 4.159 29 C -0.103 4.103 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.400 0.600 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.263 0.737 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.379 0.621 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.103 0.897 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.102 7.727 -19.616 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.040 4.040 7 C -0.124 4.124 8 C 0.342 3.658 9 O -0.409 6.409 10 N -0.356 5.356 11 C 0.035 3.965 12 H 0.124 0.876 13 C 0.001 3.999 14 N -0.331 5.331 15 C -0.454 4.454 16 H 0.094 0.906 17 C -0.218 4.218 18 N -0.561 5.561 19 Si 0.897 3.103 20 H -0.222 1.222 21 H -0.211 1.211 22 H -0.224 1.224 23 C -0.048 4.048 24 C 0.023 3.977 25 H 0.089 0.911 26 O -0.366 6.366 27 C -0.171 4.171 28 C -0.196 4.196 29 C -0.121 4.121 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.234 0.766 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.226 0.774 43 H 0.125 0.875 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.673 5.873 -19.145 22.240 hybrid contribution -0.014 1.618 -0.417 1.671 sum 9.659 7.491 -19.563 23.067 Atomic orbital electron populations 1.20823 0.91011 1.02708 1.02818 1.19919 0.96282 0.92883 0.98929 1.21062 0.94335 0.97502 1.01003 1.21074 0.94263 0.97774 1.00197 1.20978 0.99885 0.91614 1.01262 1.18667 0.92978 0.91471 1.00880 1.20087 0.99192 0.95569 0.97527 1.19263 0.78826 0.85168 0.82564 1.90711 1.40107 1.27452 1.82636 1.45814 1.52660 1.31089 1.06035 1.22014 0.93510 0.95599 0.85337 0.87632 1.21715 0.93862 0.98540 0.85765 1.44582 1.14597 1.73061 1.00818 1.20067 1.08000 1.22951 0.94389 0.90649 1.25990 1.01332 1.03108 0.91353 1.70904 1.32871 1.21584 1.30718 0.83842 0.74970 0.76676 0.74858 1.22168 1.21078 1.22429 1.22717 0.87317 0.97968 0.96755 1.23269 0.87107 0.91718 0.95606 0.91111 1.86468 1.43775 1.62652 1.43722 1.23037 1.00419 1.01662 0.91944 1.23180 0.89891 1.03536 1.02985 1.20936 0.93404 0.98060 0.99710 0.90755 0.91550 0.91399 0.86087 0.85931 0.85818 0.76562 0.94352 0.94628 0.92641 0.91693 0.93750 0.77413 0.87515 0.87787 0.87515 0.87814 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.01 36.00 0.36 -0.78 16 2 C -0.08 -0.92 5.88 -104.63 -0.62 -1.53 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.12 -1.18 9.31 -39.58 -0.37 -1.55 16 6 C -0.04 -0.46 5.25 -104.62 -0.55 -1.01 16 7 C -0.12 -1.41 2.18 -156.81 -0.34 -1.75 16 8 C 0.56 8.58 6.74 -10.99 -0.07 8.50 16 9 O -0.53 -10.20 16.48 5.55 0.09 -10.11 16 10 N -0.71 -10.57 5.11 -52.03 -0.27 -10.84 16 11 C 0.14 2.54 3.08 -66.09 -0.20 2.34 16 12 H 0.11 2.12 7.48 -51.93 -0.39 1.73 16 13 C 0.13 2.73 7.01 -3.06 -0.02 2.71 16 14 N -0.60 -14.81 3.22 -170.06 -0.55 -15.35 16 15 C -0.33 -9.35 10.45 -15.05 -0.16 -9.51 16 16 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 17 C -0.02 -0.50 5.44 -17.43 -0.09 -0.59 16 18 N -0.92 -28.58 13.70 55.49 0.76 -27.82 16 19 Si 1.06 26.48 24.70 -169.99 -4.20 22.28 16 20 H -0.29 -6.75 6.74 56.52 0.38 -6.37 16 21 H -0.28 -6.84 6.16 56.52 0.35 -6.49 16 22 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 23 C 0.08 1.67 4.44 -2.53 -0.01 1.66 16 24 C 0.08 1.42 4.06 -24.58 -0.10 1.32 16 25 H 0.07 1.09 8.01 -51.93 -0.42 0.67 16 26 O -0.56 -8.49 13.47 -35.23 -0.47 -8.96 16 27 C -0.13 -1.34 9.78 -26.69 -0.26 -1.60 16 28 C -0.16 -1.39 9.49 -26.69 -0.25 -1.64 16 29 C -0.10 -1.32 9.09 -39.58 -0.36 -1.68 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 32 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.12 0.95 6.40 -52.49 -0.34 0.61 16 36 H 0.40 5.05 8.57 -40.82 -0.35 4.70 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.76 8.03 -51.93 -0.42 0.34 16 39 H 0.26 8.09 8.73 -40.82 -0.36 7.74 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 41 H 0.05 0.99 5.31 -51.93 -0.28 0.72 16 42 H 0.38 4.05 9.11 45.56 0.42 4.47 16 43 H 0.11 1.15 8.11 -51.93 -0.42 0.73 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.11 0.72 6.54 -51.93 -0.34 0.38 16 46 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.12 1.71 8.05 -52.49 -0.42 1.29 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -34.78 382.54 -9.02 -43.81 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.32 Total: 9.44 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.83 Total: -8.21 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.05 Total: -54.01 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.38 Total: -19.07 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -4.20 Total: 22.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.78 -9.02 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078232317.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.021 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds